View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4939_low_2 (Length: 405)
Name: NF4939_low_2
Description: NF4939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4939_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 13636938 - 13637321
Alignment:
| Q |
1 |
gaaaacactttataaaagaggaaaattgtgtgattctctttccaaagacatgtaaaaacaccaaaaataaaattatctagattgtgattcacttgtgcaa |
100 |
Q |
| |
|
||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
13636938 |
gaaaacaattcataaaagagtaaaattgtgtgattctctttccaaagacatgtaaaaacaccaaaaataacattatctagattgtgactcacttgtgcaa |
13637037 |
T |
|
| Q |
101 |
cacacaa-ggtagttttannnnnnn--accgagtgtgatgctaaaaaatttctagtttgaacatatgggggtccttcttaaaccagttataatgagctta |
197 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| ||| || |||| |||||||||||||| |
|
|
| T |
13637038 |
cacacaaaggtagttttattatattttaccgagtgtgatgctaaaaaacttctagtttggacatatgggggtctttcgtataccatttataatgagctta |
13637137 |
T |
|
| Q |
198 |
atgattgcataaatacaccaataagctatttgagtttgacaacttttggagcatattgaactgcaatcttatatactcagcattcattaaagataaggta |
297 |
Q |
| |
|
||| | |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13637138 |
atggtagcataaatacaccaataagctattcgagtttgacaacttttggatcatattgaactgcaatcttatatactcagcattcattaaagataaggta |
13637237 |
T |
|
| Q |
298 |
attttatgcatgatatactaggctttacaaatttcatatcagaataaggtttattagtttattactatattgtctgttagattttgttggaaatt |
392 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13637238 |
attttatgcatgatatactagggtttac---tttcatatcagaataag--------gtttattactatattgtctgatagattttgttggaaatt |
13637321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 13655507 - 13655612
Alignment:
| Q |
11 |
tataaaagaggaaaattgtgtgattctctttccaaagacatgtaaaaacaccaaaaataaaattatctagattgtgattcacttgtgcaacacacaaggt |
110 |
Q |
| |
|
||||||||||||| ||| ||||||| | ||||||||||||| ||||| |||||||| ||||||| ||| |||||||||||||||||||||||||| || |
|
|
| T |
13655507 |
tataaaagaggaagattttgtgattttttttccaaagacatataaaagcaccaaaa-taaaattcactattttgtgattcacttgtgcaacacacaaagt |
13655605 |
T |
|
| Q |
111 |
agtttta |
117 |
Q |
| |
|
||||||| |
|
|
| T |
13655606 |
agtttta |
13655612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 14999459 - 14999500
Alignment:
| Q |
14 |
aaaagaggaaaattgtgtgattctctttccaaagacatgtaa |
55 |
Q |
| |
|
|||||||||||||| |||||||||| | |||||||||||||| |
|
|
| T |
14999459 |
aaaagaggaaaattatgtgattctcatgccaaagacatgtaa |
14999500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 29468312 - 29468353
Alignment:
| Q |
14 |
aaaagaggaaaattgtgtgattctctttccaaagacatgtaa |
55 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
29468312 |
aaaagaggagaattgtgtgattctcttgccgaagacatgtaa |
29468353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University