View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4939_low_3 (Length: 399)

Name: NF4939_low_3
Description: NF4939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4939_low_3
NF4939_low_3
[»] chr5 (5 HSPs)
chr5 (137-306)||(40039400-40039570)
chr5 (1-47)||(40039653-40039699)
chr5 (254-291)||(7483583-7483620)
chr5 (254-299)||(1008003-1008047)
chr5 (254-299)||(34598349-34598393)
[»] chr1 (4 HSPs)
chr1 (254-301)||(1607490-1607537)
chr1 (254-299)||(51681278-51681322)
chr1 (254-299)||(14422648-14422692)
chr1 (254-299)||(34069652-34069696)
[»] chr8 (5 HSPs)
chr8 (254-293)||(37939323-37939362)
chr8 (254-306)||(9639708-9639759)
chr8 (254-286)||(22437977-22438009)
chr8 (254-306)||(26063742-26063793)
chr8 (254-306)||(40374566-40374617)
[»] chr7 (8 HSPs)
chr7 (254-299)||(18803800-18803844)
chr7 (254-301)||(1731101-1731147)
chr7 (254-293)||(1870948-1870987)
chr7 (254-293)||(21849276-21849315)
chr7 (254-293)||(25823812-25823851)
chr7 (254-299)||(36780849-36780893)
chr7 (254-306)||(23974157-23974208)
chr7 (254-286)||(28036568-28036600)
[»] chr6 (3 HSPs)
chr6 (254-299)||(8440123-8440167)
chr6 (254-299)||(28667452-28667496)
chr6 (254-306)||(33023518-33023569)
[»] chr3 (7 HSPs)
chr3 (254-299)||(31880193-31880237)
chr3 (254-299)||(4470692-4470736)
chr3 (254-299)||(19113641-19113685)
chr3 (254-299)||(26859746-26859790)
chr3 (254-299)||(27659187-27659231)
chr3 (254-299)||(30821245-30821289)
chr3 (254-299)||(41748904-41748948)
[»] chr2 (8 HSPs)
chr2 (254-299)||(41766811-41766855)
chr2 (254-299)||(1721762-1721806)
chr2 (254-299)||(1722152-1722196)
chr2 (254-299)||(9437080-9437124)
chr2 (254-299)||(29386928-29386972)
chr2 (254-287)||(42185173-42185206)
chr2 (254-291)||(45133783-45133820)
chr2 (254-295)||(18724015-18724058)
[»] chr4 (5 HSPs)
chr4 (254-299)||(36703838-36703882)
chr4 (254-299)||(42058970-42059014)
chr4 (254-299)||(47812122-47812166)
chr4 (254-306)||(49332460-49332511)
chr4 (254-306)||(55173081-55173132)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 137 - 306
Target Start/End: Complemental strand, 40039570 - 40039400
Alignment:
Q  137 caggcgctgttttattttaccaatagcatgacaaccgttcaagtgagttttactgaacaacaggaactttgcaagtgagttattgttgatgttattatta 236  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40039570 caggcgctgttttattttaccaatagcatgacaaccgtgcaagtgagttttactgaacaacaggaactttgcaagtgagttattgttgatgttattatta 40039471  T
Q  237 gggnnnnnnngtctc--tcaatatatcaacttttcgttttagtctttttaaaaattttccttcaattattag 306  Q
    |||        ||||  | ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40039470 gggtttttttctctctataaatatatcaacttttcgttttagtctttttaaaaatttt-cttcaattattag 40039400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 40039699 - 40039653
Alignment:
Q  1 aacatgctatcttatgagagaatagtctcccaacaccattggtatat 47  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  40039699 aacatgctatcttatgagagtatagtctcccaacaccattggtatat 40039653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 7483620 - 7483583
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattt 291  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  7483620 aatatatcaacttttcgttttagtccttttaaaaattt 7483583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 1008047 - 1008003
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    |||||||||||||||||||||||||| | | |||||||||||||||    
T  1008047 aatatatcaacttttcgttttagtctctct-aaaattttccttcaa 1008003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 34598393 - 34598349
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||||    
T  34598393 aatatgtcaactttttgttttagtcttttt-aaaattttccttcaa 34598349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 1607490 - 1607537
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaatt 301  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||    
T  1607490 aatatatcaacttttcgttttagtccctttaaaaattttccttcaatt 1607537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 51681322 - 51681278
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||    
T  51681322 aatatatcaacttttcgttttagtcctttt-aaaattttccttcaa 51681278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 14422648 - 14422692
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    ||||||||||||||||||||||||| || | |||||||||||||||    
T  14422648 aatatatcaacttttcgttttagtccttct-aaaattttccttcaa 14422692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 34069652 - 34069696
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||    
T  34069652 aatatatcaacttttcgttttagtcccttt-aaaattttccttcaa 34069696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 37939362 - 37939323
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttc 293  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  37939362 aatataccaacttttcgttttagtctttttaaaaattttc 37939323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 9639759 - 9639708
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaattattag 306  Q
    |||||||||||||||||||||||||  | | ||||||||||||||| ||||||    
T  9639759 aatatatcaacttttcgttttagtccctct-aaaattttccttcaactattag 9639708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 22437977 - 22438009
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaa 286  Q
    |||||||||||||||||||||||||||| ||||    
T  22437977 aatatatcaacttttcgttttagtctttctaaa 22438009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 26063793 - 26063742
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaattattag 306  Q
    |||||||||||||||||||||||||  | | ||||||||||||||||| ||||    
T  26063793 aatatatcaacttttcgttttagtccctat-aaaattttccttcaatttttag 26063742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 40374617 - 40374566
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaattattag 306  Q
    |||||||||||||||||||||||||  ||| ||||||||||||| ||| ||||    
T  40374617 aatatatcaacttttcgttttagtcccttt-aaaattttccttcgatttttag 40374566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 18803844 - 18803800
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||    
T  18803844 aatatatcaacttttcgttttagt-ttttttaaaattttccttcaa 18803800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 301
Target Start/End: Complemental strand, 1731147 - 1731101
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaatt 301  Q
    |||||||||||||||||||||||||| | | |||||||||||||||||    
T  1731147 aatatatcaacttttcgttttagtctctct-aaaattttccttcaatt 1731101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 1870987 - 1870948
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttc 293  Q
    ||||||||||||||||||||||||| ||||||||| ||||    
T  1870987 aatatatcaacttttcgttttagtccttttaaaaaatttc 1870948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 21849276 - 21849315
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttc 293  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  21849276 aatatatcaacttttcgttttagtctctttaaaatttttc 21849315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 25823851 - 25823812
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttc 293  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  25823851 aatatatcaacttttcgttttagtctctttaaaaaatttc 25823812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 36780893 - 36780849
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    ||||||||||||||| ||||||||| |||| |||||||||||||||    
T  36780893 aatatatcaactttttgttttagtcatttt-aaaattttccttcaa 36780849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 23974208 - 23974157
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaattattag 306  Q
    |||||||||||||||||||||||| ||||  ||||||||||||| ||| ||||    
T  23974208 aatatatcaacttttcgttttagt-ttttctaaaattttccttcgatttttag 23974157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 28036600 - 28036568
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaa 286  Q
    ||||||| |||||||||||||||||||||||||    
T  28036600 aatatataaacttttcgttttagtctttttaaa 28036568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 8440123 - 8440167
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||    
T  8440123 aatatatcaacttttcgttttagtctcttt-aaaattttccttcaa 8440167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 28667496 - 28667452
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||    
T  28667496 aatatatcaacttttctttttagtcctttt-aaaattttccttcaa 28667452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 33023518 - 33023569
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaattattag 306  Q
    |||||||||||||||||||||| ||| | |||||| |||||||||||| ||||    
T  33023518 aatatatcaacttttcgttttaatctctctaaaaa-tttccttcaatttttag 33023569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 31880237 - 31880193
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||    
T  31880237 aatatatcaacttttcgttttagtctcttt-aaaattttccttcaa 31880193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 4470692 - 4470736
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    |||||||||||||||||||||||||| | | |||||||||||||||    
T  4470692 aatatatcaacttttcgttttagtctctct-aaaattttccttcaa 4470736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 19113641 - 19113685
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    ||||| ||||||||||||||||||| |||| |||||||||||||||    
T  19113641 aatatgtcaacttttcgttttagtcctttt-aaaattttccttcaa 19113685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 26859790 - 26859746
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    |||||||||||||||||||||| ||| ||| |||||||||||||||    
T  26859790 aatatatcaacttttcgttttaatctcttt-aaaattttccttcaa 26859746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 27659231 - 27659187
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||    
T  27659231 aatatatcaacttttcgttttagtcccttt-aaaattttccttcaa 27659187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 30821245 - 30821289
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    |||||||||||||||||||||||||| | | |||||||||||||||    
T  30821245 aatatatcaacttttcgttttagtctctct-aaaattttccttcaa 30821289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 41748904 - 41748948
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||    
T  41748904 aatatatcaacttttcgttttagtcccttt-aaaattttccttcaa 41748948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 41766811 - 41766855
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||    
T  41766811 aatatatcaacttttcgttttagtcctttt-aaaattttccttcaa 41766855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 1721762 - 1721806
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    |||||| ||||||||||||||||||||| | |||||||||||||||    
T  1721762 aatataccaacttttcgttttagtctttct-aaaattttccttcaa 1721806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 1722196 - 1722152
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||||    
T  1722196 aatatatcaactttttgttttagtctcttt-aaaattttccttcaa 1722152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 9437080 - 9437124
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||    
T  9437080 aatataccaacttttcgttttagtcctttt-aaaattttccttcaa 9437124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 29386928 - 29386972
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||    
T  29386928 aatataccaacttttcgttttagtcctttt-aaaattttccttcaa 29386972  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 42185173 - 42185206
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaa 287  Q
    ||||| ||||||||||||||||||||||||||||    
T  42185173 aatatgtcaacttttcgttttagtctttttaaaa 42185206  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Original strand, 45133783 - 45133820
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattt 291  Q
    |||||||||||||||||||||||||  |||||||||||    
T  45133783 aatatatcaacttttcgttttagtccctttaaaaattt 45133820  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 18724015 - 18724058
Alignment:
Q  254 aatatatcaactttt--cgttttagtctttttaaaaattttcct 295  Q
    |||||||||||||||  ||||||||||| |||||||||||||||    
T  18724015 aatatatcaacttttttcgttttagtctctttaaaaattttcct 18724058  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 36703882 - 36703838
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    ||||||||||||||||||||||||| || | |||||||||||||||    
T  36703882 aatatatcaacttttcgttttagtccttct-aaaattttccttcaa 36703838  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 42058970 - 42059014
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||    
T  42058970 aatatatcaacttttcattttagtcctttt-aaaattttccttcaa 42059014  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 47812122 - 47812166
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaa 299  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||||    
T  47812122 aatatatcaactttttgttttagtctcttt-aaaattttccttcaa 47812166  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 49332460 - 49332511
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaattattag 306  Q
    |||||||||||||||||||||||||  | | ||||||||||||||||| ||||    
T  49332460 aatatatcaacttttcgttttagtccctat-aaaattttccttcaatttttag 49332511  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 55173132 - 55173081
Alignment:
Q  254 aatatatcaacttttcgttttagtctttttaaaaattttccttcaattattag 306  Q
    |||||||||||||||||||||||||| | | ||||||||||||| ||| ||||    
T  55173132 aatatatcaacttttcgttttagtctctct-aaaattttccttcgatttttag 55173081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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