View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4939_low_7 (Length: 239)
Name: NF4939_low_7
Description: NF4939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4939_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 40526061 - 40526246
Alignment:
| Q |
18 |
gcattaacctcttgtctctttaggcattggttgattgtcttttttgtatatatttaggatatgttgctgtattttgctttgttcttctttgcacaccttg |
117 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40526061 |
gcatcaacctcttgtctttttaggcattggttgattgtcttttttgtatatatttaggatatgttgctgtattttgctttgctcttctttgcacaccttg |
40526160 |
T |
|
| Q |
118 |
tgctagagagtagagctctccctttttggtaatatatcttatttttgtttgtnnnnnnntaataataattcaacttctaatctacc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40526161 |
tgctagagagtagagctctccctttttgataatatatcttagttttgtttgtaaaaaaataataataattcaacttctaatctacc |
40526246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 14551055 - 14550909
Alignment:
| Q |
23 |
aacctcttgtctctttaggcattggttgattgtcttttttgtatatatttaggatatgttgctgtattttgctttgttcttctttgcacaccttgtgcta |
122 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||| |||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
14551055 |
aacctcttgtctgtttaggcattggttgactgtcttttttgtatatattcaggatactttgttgtattttgctttgctcttctttgcacatcttgtgcta |
14550956 |
T |
|
| Q |
123 |
gagagtagagctctccctttttggtaatatatcttatttttgtttgt |
169 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| |||||||||||| |
|
|
| T |
14550955 |
aagagtagagccctccctttatggtaatatatctcatttttgtttgt |
14550909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 20248821 - 20248961
Alignment:
| Q |
23 |
aacctcttgtctctttaggcattggttgattgtcttttttgtatatatttaggatatgttgctgtattttgctttgttcttctttgcacaccttgtgcta |
122 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||| | |||| || ||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
20248821 |
aacctcttgtctatttaggcattgattgattgtcttttttgtatatattcaagatactttactgtattttgctttgctcttctttgcacgccttgtgcta |
20248920 |
T |
|
| Q |
123 |
gagagtagagctctccctttttggtaatatatcttattttt |
163 |
Q |
| |
|
||||||||||||||| |||| |||| |||||||| |||||| |
|
|
| T |
20248921 |
gagagtagagctctcactttgtggtgatatatctcattttt |
20248961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 42674944 - 42674798
Alignment:
| Q |
23 |
aacctcttgtctctttaggcattggttgattgtcttttttgtatatatttaggatatgttgctgtattttgctttgttcttctttgcacaccttgtgcta |
122 |
Q |
| |
|
|||||||| ||| ||||| ||||| |||| ||||||||||||||||||| | |||| |||||||||||||||||| |||||| ||| | |||||||| | |
|
|
| T |
42674944 |
aacctcttatctatttagacattgattgactgtcttttttgtatatattcaagatactttgctgtattttgctttgctcttctatgcgcgccttgtgcca |
42674845 |
T |
|
| Q |
123 |
gagagtagagctctccctttttggtaatatatcttatttttgtttgt |
169 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
42674844 |
aagagtagagctctccctttgtggtaatgtatctcatttttgtttgt |
42674798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 1039024 - 1038976
Alignment:
| Q |
118 |
tgctagagagtagagctctccctttttggtaatatatcttatttttgtt |
166 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
1039024 |
tgctagagagtagagctctccctttgtggtaatatatctcatttttgtt |
1038976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 2959469 - 2959360
Alignment:
| Q |
29 |
ttgtctctttaggcattggttgattgtcttttttgtatatatttaggatatgttgctgtattttgctttgttcttctttgcacaccttgtgctagagagt |
128 |
Q |
| |
|
|||||| |||||| ||||||||| ||||||||||||||||||| || ||| ||||| |||||||||||| |||||||||||| | |||| ||||||||| |
|
|
| T |
2959469 |
ttgtctgtttaggaattggttgagtgtcttttttgtatatattcagaatactttgctatattttgctttgctcttctttgcacgctttgtactagagagt |
2959370 |
T |
|
| Q |
129 |
agagctctcc |
138 |
Q |
| |
|
|||||||||| |
|
|
| T |
2959369 |
agagctctcc |
2959360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 22816492 - 22816387
Alignment:
| Q |
64 |
tatatatttaggatatgttgctgtattttgctttgttcttctttgcacaccttgtgctagagagtagagctctccctttttggtaatatatcttattttt |
163 |
Q |
| |
|
|||||||| | |||| ||| |||||||||||||| |||||||| ||| | |||||||||||||||||||||| |||| ||||| ||||||| |||||| |
|
|
| T |
22816492 |
tatatattcaagatactttgttgtattttgctttgatcttctttacacgctttgtgctagagagtagagctcttccttaatggtattatatctcattttt |
22816393 |
T |
|
| Q |
164 |
gtttgt |
169 |
Q |
| |
|
|||||| |
|
|
| T |
22816392 |
gtttgt |
22816387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 22816570 - 22816518
Alignment:
| Q |
18 |
gcattaacctcttgtctctttaggcattggttgattgtcttttttgtatatat |
70 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
22816570 |
gcatcaacctcttgtctgtttaggcattggttgactgtcttttttatatatat |
22816518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 30819176 - 30819088
Alignment:
| Q |
81 |
ttgctgtattttgctttgttcttctttgcacaccttgtgctagagagtagagctctccctttttggtaatatatcttatttttgtttgt |
169 |
Q |
| |
|
||||||||||||| | || | |||| |||||| |||||| ||||||||||| || | |||| || |||||||||| |||||||||||| |
|
|
| T |
30819176 |
ttgctgtattttggtctgctattctatgcacatcttgtgatagagagtagatctttttctttgtgataatatatctcatttttgtttgt |
30819088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University