View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4940-Insertion-1 (Length: 864)

Name: NF4940-Insertion-1
Description: NF4940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4940-Insertion-1
NF4940-Insertion-1
[»] chr1 (14 HSPs)
chr1 (8-420)||(28675212-28675636)
chr1 (701-864)||(28674763-28674925)
chr1 (485-586)||(28675046-28675147)
chr1 (760-822)||(2784561-2784623)
chr1 (731-801)||(5898229-5898299)
chr1 (731-819)||(18190071-18190159)
chr1 (759-815)||(23636040-23636096)
chr1 (772-819)||(609462-609509)
chr1 (769-835)||(6427342-6427408)
chr1 (763-852)||(2896116-2896205)
chr1 (770-819)||(12993202-12993251)
chr1 (758-815)||(29163371-29163428)
chr1 (731-820)||(40258896-40258985)
chr1 (731-788)||(43492457-43492514)
[»] chr6 (11 HSPs)
chr6 (724-799)||(26314590-26314665)
chr6 (732-819)||(9658887-9658974)
chr6 (769-820)||(14721248-14721299)
chr6 (731-816)||(13360336-13360420)
chr6 (770-819)||(15443703-15443752)
chr6 (728-819)||(7977790-7977881)
chr6 (769-819)||(9617442-9617492)
chr6 (769-819)||(24115848-24115898)
chr6 (731-801)||(28152124-28152194)
chr6 (769-818)||(9629392-9629441)
chr6 (731-799)||(33419201-33419270)
[»] scaffold0022 (1 HSPs)
scaffold0022 (731-820)||(90850-90939)
[»] chr3 (6 HSPs)
chr3 (769-821)||(7614416-7614468)
chr3 (740-819)||(45451561-45451640)
chr3 (732-822)||(21419420-21419509)
chr3 (769-837)||(47362552-47362620)
chr3 (774-816)||(27097065-27097107)
chr3 (762-819)||(20691327-20691384)
[»] chr7 (9 HSPs)
chr7 (740-819)||(22484033-22484112)
chr7 (740-817)||(3554478-3554555)
chr7 (731-819)||(598216-598304)
chr7 (731-826)||(21880153-21880248)
chr7 (764-819)||(24146824-24146879)
chr7 (731-778)||(33994261-33994308)
chr7 (772-822)||(27732243-27732293)
chr7 (770-819)||(23849460-23849509)
chr7 (769-819)||(19206058-19206108)
[»] chr5 (5 HSPs)
chr5 (769-819)||(22423813-22423863)
chr5 (767-819)||(23287348-23287400)
chr5 (769-819)||(17925173-17925223)
chr5 (769-819)||(18592081-18592131)
chr5 (772-822)||(30098331-30098381)
[»] chr4 (3 HSPs)
chr4 (731-819)||(8423681-8423769)
chr4 (747-818)||(9996849-9996920)
chr4 (762-826)||(11135288-11135352)
[»] chr8 (9 HSPs)
chr8 (752-819)||(14134707-14134774)
chr8 (762-819)||(12985400-12985457)
chr8 (735-819)||(20679362-20679446)
chr8 (769-820)||(4786339-4786390)
chr8 (764-819)||(12606825-12606880)
chr8 (775-821)||(8798838-8798884)
chr8 (770-819)||(7658471-7658520)
chr8 (746-819)||(26434188-26434261)
chr8 (781-826)||(38278188-38278233)
[»] chr2 (7 HSPs)
chr2 (769-819)||(31026703-31026753)
chr2 (731-779)||(27084317-27084365)
chr2 (768-819)||(34331395-34331446)
chr2 (774-813)||(35973949-35973988)
chr2 (769-822)||(17077013-17077065)
chr2 (781-834)||(35447900-35447953)
chr2 (777-822)||(41942110-41942155)
[»] scaffold0110 (1 HSPs)
scaffold0110 (770-822)||(28855-28907)
[»] scaffold0050 (1 HSPs)
scaffold0050 (731-821)||(70284-70374)


Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 420
Target Start/End: Complemental strand, 28675636 - 28675212
Alignment:
8 tttggtgggtcccacatactctcttttgttgccattttgttaggaaggattcagtttgctgctttggatttcgaagaaaaggtaaagcttcaaaagtttc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
28675636 tttggtgggtcccacatactctcttttgttgccattttgttaggaaggattcagtttgctgctttggatttcgaagaaaaagtaaagcttcaaaagtttc 28675537  T
108 agaagcttcaatgaaaaatggttcaaaagaatcacatatagaagaagaagaagaggaa------------aataacagagtatttaaagctaaagtttta 195  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||            ||||||||||||||||||||||||||||||    
28675536 agaagcttcaatgaaaaatggttcaaaagaatcatatatagaagaagaagaagaagaagaagaagaagaaaataacagagtatttaaagctaaagtttta 28675437  T
196 gtttctgattctaatgattcttccactttttgttctactccaccaaaaaatgctttgttactaactagatgcaaatcagcaccatatagttcatcttcac 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28675436 gtttctgattctaatgattcttccactttttgttctactccaccaaaaaatgctttgttactaactagatgcaaatcagcaccatatagttcatcttcac 28675337  T
296 tagcaagtaggttttggggttctcctttaaggaatgaagaaacagagcaaccctctgaggagaaacagagtgagtctgtttcagtttcaaagttgagatt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28675336 tagcaagtaggttttggggttctcctttaaggaatgaagaaacagagcaaccctctgaggagaaacagagtgagtctgtttcagtttcaaagttgagatt 28675237  T
396 tttcaaagaacctgaagattcagcg 420  Q
    ||||||||||| |||||||||||||    
28675236 tttcaaagaacttgaagattcagcg 28675212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 701 - 864
Target Start/End: Complemental strand, 28674925 - 28674763
Alignment:
701 gagttgaatatagggcacatacgctttttagattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatg 800  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||| ||||||||||||||| |||||||||||| ||||||||||||||| |||||||||    
28674925 gagttgaatatagggcacatacactttt-agattaggcgtgtctcagtgttggacaagtgtcgtgtctgacaccaacatatataattatactgaattatg 28674827  T
801 tagttttcttaaattattaacgatgttagcgtgtcggcgtctatgttgtgtctaatgtctgtgt 864  Q
    || |||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
28674826 taattttctcaaattattaacggtgttagcgtgtcggcgtctatgttgtgtctagtgtctgtgt 28674763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 485 - 586
Target Start/End: Complemental strand, 28675147 - 28675046
Alignment:
485 gagaatctatagcatttcctctagtgctaacaagatgcaaatctgaacgagcaggaaaatcttgatccaaaggtttttgcagataccttcttctttacat 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
28675147 gagaatctatagcatttcctctagtgctaacaagatgcaaatctgaacgagcaagaaaatcttgatccaaaggtttttgcagataccttcttctttacat 28675048  T
585 gg 586  Q
    ||    
28675047 gg 28675046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 760 - 822
Target Start/End: Complemental strand, 2784623 - 2784561
Alignment:
760 gttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaacg 822  Q
    ||||||||||||||||||| ||||||||||| | ||||||||  |||||||||||| ||||||    
2784623 gttgtgtctgacaccgacacatataattatactcaattatgtgattttcttaaatttttaacg 2784561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 731 - 801
Target Start/End: Original strand, 5898229 - 5898299
Alignment:
731 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgt 801  Q
    |||||| | |||| |||||||||||| |||| |||||||||||||||  ||||||||| | ||||||||||    
5898229 gattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccgacgcatataattacactgaattatgt 5898299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 731 - 819
Target Start/End: Original strand, 18190071 - 18190159
Alignment:
731 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    |||||||  |||| |||||| ||||| ||||||||||||||| |||||  | |||||| | ||||||||||| |||| | |||||||||    
18190071 gattaggtgtgtcccggtgtcggacacgtgttgtgtctgacatcgacacttgtaattacactgaattatgtaattttttcaaattatta 18190159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 815
Target Start/End: Original strand, 23636040 - 23636096
Alignment:
759 tgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaatt 815  Q
    |||||||||||||||||||| ||| ||||| | ||||||||||| |||||| |||||    
23636040 tgttgtgtctgacaccgacacatacaattacactgaattatgtaattttctcaaatt 23636096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 819
Target Start/End: Original strand, 609462 - 609509
Alignment:
772 accgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    |||||||||||| ||||| |||||||||||| |||||| |||||||||    
609462 accgacatatatgattatgttgaattatgtaattttctcaaattatta 609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 835
Target Start/End: Complemental strand, 6427408 - 6427342
Alignment:
769 gacaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgttagcgtgtc 835  Q
    |||||| ||| ||||||||| ||||||||||||  |||||| ||||||||| || |||| |||||||    
6427408 gacaccaacacatataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtc 6427342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 763 - 852
Target Start/End: Original strand, 2896116 - 2896205
Alignment:
763 gtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgttagcgtgtcggcgtctatgttgtgtc 852  Q
    ||||||||||||||||||||||  || | ||||||||||  |||||| ||||||||| || |||  ||||||| | |||  |||||||||    
2896116 gtgtctgacaccgacatatatagctacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtc 2896205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 770 - 819
Target Start/End: Complemental strand, 12993251 - 12993202
Alignment:
770 acaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    ||||||||||||||||||| ||||||||| ||| ||| | ||||||||||    
12993251 acaccgacatatataattacattgaattacgtaatttacgtaaattatta 12993202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 815
Target Start/End: Original strand, 29163371 - 29163428
Alignment:
758 gtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaatt 815  Q
    |||| ||||| |||||||||| ||||||||| ||||||||||||  ||||| ||||||    
29163371 gtgtcgtgtccgacaccgacacatataattaaattgaattatgtgattttcctaaatt 29163428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 731 - 820
Target Start/End: Original strand, 40258896 - 40258985
Alignment:
731 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaa 820  Q
    |||||||| ||||  ||||| ||||| |||| ||||||||||||||||  | |||||| | ||||||||||  |||| | ||||||||||    
40258896 gattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaattatgtgattttttcaaattattaa 40258985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 731 - 788
Target Start/End: Original strand, 43492457 - 43492514
Alignment:
731 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataatta 788  Q
    |||||||| |||  |||||| ||||| ||||||||||||||||||||| | |||||||    
43492457 gattaggcgtgtgccggtgtcggacatgtgttgtgtctgacaccgacacacataatta 43492514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 724 - 799
Target Start/End: Original strand, 26314590 - 26314665
Alignment:
724 ctttttagattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattat 799  Q
    |||||| ||||| || ||| |||||||||||||||||| || |||||| |||||||||||||||| ||||||||||    
26314590 ctttttcgattaagcttgtttcggtgttggacaagtgtcgtatctgaccccgacatatataattacattgaattat 26314665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 732 - 819
Target Start/End: Complemental strand, 9658974 - 9658887
Alignment:
732 attaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    ||||||| |||  ||||||  |||| |||| |||||| ||||||||| ||||||||| | ||||||||||  ||||||||||||||||    
9658974 attaggcgtgttccggtgtcagacacgtgtcgtgtctaacaccgacaaatataattacactgaattatgtgattttcttaaattatta 9658887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 769 - 820
Target Start/End: Complemental strand, 14721299 - 14721248
Alignment:
769 gacaccgacatatataattatattgaattatgtagttttcttaaattattaa 820  Q
    |||||| ||| ||||||||||| ||||||||||| |||||||||||||||||    
14721299 gacaccaacacatataattatagtgaattatgtaattttcttaaattattaa 14721248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 731 - 816
Target Start/End: Original strand, 13360336 - 13360420
Alignment:
731 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaatta 816  Q
    |||||||| |||||| |||| |||||  |||||||||||||||||| | ||||||||| | ||||||||||  |||||| ||||||    
13360336 gattaggcgtgtctcagtgtcggacat-tgttgtgtctgacaccgaaacatataattacactgaattatgtgattttctcaaatta 13360420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 770 - 819
Target Start/End: Complemental strand, 15443752 - 15443703
Alignment:
770 acaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    ||||| ||||||||||||||||||||||||||  |||||| |||||||||    
15443752 acaccaacatatataattatattgaattatgttattttctcaaattatta 15443703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 728 - 819
Target Start/End: Original strand, 7977790 - 7977881
Alignment:
728 ttagattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    ||||||||||| ||| ||| ||| |||||  ||||||||| ||||||||||  | |||||| | ||||||||||| |||| | |||||||||    
7977790 ttagattaggcgtgtttcgttgtcggacatatgttgtgtccgacaccgacacttgtaattacactgaattatgtaattttttcaaattatta 7977881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 819
Target Start/End: Complemental strand, 9617492 - 9617442
Alignment:
769 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    |||||||||| ||||||||| ||||||||||||  |||||| |||||||||    
9617492 gacaccgacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 819
Target Start/End: Original strand, 24115848 - 24115898
Alignment:
769 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    |||||| ||||||||||||||||||||||||||  |||| | |||||||||    
24115848 gacaccaacatatataattatattgaattatgtgattttttgaaattatta 24115898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 731 - 801
Target Start/End: Complemental strand, 28152194 - 28152124
Alignment:
731 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgt 801  Q
    ||||||||||||| |||||| ||||| |||| ||||| ||||||||||  | |||||| | ||||||||||    
28152194 gattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgt 28152124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 769 - 818
Target Start/End: Complemental strand, 9629441 - 9629392
Alignment:
769 gacaccgacatatataattatattgaattatgtagttttcttaaattatt 818  Q
    |||||||||| ||||||||| ||||||||||||  |||||| ||||||||    
9629441 gacaccgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 731 - 799
Target Start/End: Complemental strand, 33419270 - 33419201
Alignment:
731 gattaggcctgtctcggtgttggacaagtgttg-tgtctgacaccgacatatataattatattgaattat 799  Q
    |||||||| ||||  ||||||||||| | |||| ||||||||||| ||| ||||||||| ||||||||||    
33419270 gattaggcatgtcctggtgttggacacgcgttggtgtctgacaccaacacatataattacattgaattat 33419201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 731 - 820
Target Start/End: Complemental strand, 90939 - 90850
Alignment:
731 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaa 820  Q
    |||||||| ||| | ||||| ||||| ||||||||||||||| ||||||||||||||| | |||||||| |  |||||| ||||||||||    
90939 gattaggcgtgttttggtgtcggacacgtgttgtgtctgacatcgacatatataattacactgaattatatgattttctcaaattattaa 90850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 769 - 821
Target Start/End: Original strand, 7614416 - 7614468
Alignment:
769 gacaccgacatatataattatattgaattatgtagttttcttaaattattaac 821  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||||    
7614416 gacaccgacatatataattatactgaattatgtgattttcttaaattattaac 7614468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 819
Target Start/End: Complemental strand, 45451640 - 45451561
Alignment:
740 tgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    ||||||||||| ||||| |||| ||||| |||||||||| |||| |||||| |||| |||||  |||||| |||||||||    
45451640 tgtctcggtgtcggacatgtgtcgtgtccgacaccgacacatattattatactgaagtatgtgattttctcaaattatta 45451561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 732 - 822
Target Start/End: Original strand, 21419420 - 21419509
Alignment:
732 attaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaacg 822  Q
    ||||||| ||| ||||||| ||||| || | ||||  |||||| ||||||||||||| |||||||||| |  |||||||||||||||||||    
21419420 attaggcgtgtttcggtgt-ggacatgtatggtgttcgacaccaacatatataattacattgaattatattattttcttaaattattaacg 21419509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 769 - 837
Target Start/End: Complemental strand, 47362620 - 47362552
Alignment:
769 gacaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgttagcgtgtcgg 837  Q
    ||||| ||||| |||||||| ||| ||||||||| ||||||||||||||||  ||||||  ||||||||    
47362620 gacactgacatgtataattacattcaattatgtaattttcttaaattattactgatgttgacgtgtcgg 47362552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 774 - 816
Target Start/End: Original strand, 27097065 - 27097107
Alignment:
774 cgacatatataattatattgaattatgtagttttcttaaatta 816  Q
    ||||||||||||||| ||||||||||||| |||||| ||||||    
27097065 cgacatatataattaaattgaattatgtaattttctcaaatta 27097107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 762 - 819
Target Start/End: Complemental strand, 20691384 - 20691327
Alignment:
762 tgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    ||||||||||||||||| |||| |||| | ||||||||||  |||||| |||||||||    
20691384 tgtgtctgacaccgacacatatgattacactgaattatgtcattttctcaaattatta 20691327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 819
Target Start/End: Complemental strand, 22484112 - 22484033
Alignment:
740 tgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    ||||||| ||| ||||| ||||  ||||||||||||||| ||||||||||| ||||||||| | |||||| |||||||||    
22484112 tgtctcgatgtcggacatgtgtcatgtctgacaccgacacatataattatactgaattatgcaattttctaaaattatta 22484033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 740 - 817
Target Start/End: Original strand, 3554478 - 3554555
Alignment:
740 tgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattat 817  Q
    |||||| ||||| || | |||| ||||| ||||||||||| |||||||| ||| ||||||||| ||||||||||||||    
3554478 tgtctcagtgttagatatgtgtcgtgtccgacaccgacatctataattacattaaattatgtaattttcttaaattat 3554555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 731 - 819
Target Start/End: Complemental strand, 598304 - 598216
Alignment:
731 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    |||||||| |||| |||||| ||||| |||| ||||||||||||||||  || ||||| ||| ||||| ||  ||||||||||||||||    
598304 gattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaattacatttaattacgtgattttcttaaattatta 598216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 731 - 826
Target Start/End: Complemental strand, 21880248 - 21880153
Alignment:
731 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgt 826  Q
    |||||||| ||||  ||||| ||||| |||| ||||| ||||||||||  | |||||| | ||||||||||| |||||| ||||||||| ||||||    
21880248 gattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtaattttctcaaattattagcgatgt 21880153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 764 - 819
Target Start/End: Complemental strand, 24146879 - 24146824
Alignment:
764 tgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    |||| |||||||||| ||||||||||||||||||||||  |||||| |||||||||    
24146879 tgtcagacaccgacacatataattatattgaattatgtgattttctaaaattatta 24146824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 731 - 778
Target Start/End: Complemental strand, 33994308 - 33994261
Alignment:
731 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgaca 778  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||||||    
33994308 gattaggcgtgtctcggtgttggacatgtgtcgtgtctgacaccgaca 33994261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 772 - 822
Target Start/End: Original strand, 27732243 - 27732293
Alignment:
772 accgacatatataattatattgaattatgtagttttcttaaattattaacg 822  Q
    ||||||| ||||||||| | ||||||||||| |||||||||||||||||||    
27732243 accgacacatataattacactgaattatgtaattttcttaaattattaacg 27732293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 770 - 819
Target Start/End: Original strand, 23849460 - 23849509
Alignment:
770 acaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    ||||||||| ||||||||||| ||||||||||  ||||||||||||||||    
23849460 acaccgacacatataattatactgaattatgtgtttttcttaaattatta 23849509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 819
Target Start/End: Complemental strand, 19206108 - 19206058
Alignment:
769 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    |||||||||| ||||||||||| ||||||||||  |||||| |||||||||    
19206108 gacaccgacacatataattataatgaattatgtgattttctcaaattatta 19206058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 769 - 819
Target Start/End: Original strand, 22423813 - 22423863
Alignment:
769 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    |||||||||||||||||||||||||||||||||  |||||| |||||||||    
22423813 gacaccgacatatataattatattgaattatgtgattttctcaaattatta 22423863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 767 - 819
Target Start/End: Original strand, 23287348 - 23287400
Alignment:
767 ctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    ||||||| |||| ||||||||||||||||||||||  ||||| ||||||||||    
23287348 ctgacactgacacatataattatattgaattatgtcattttcctaaattatta 23287400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 819
Target Start/End: Original strand, 17925173 - 17925223
Alignment:
769 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    |||||||||| |||| |||| ||||||||||||  ||||||||||||||||    
17925173 gacaccgacacatattattacattgaattatgtgattttcttaaattatta 17925223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 819
Target Start/End: Complemental strand, 18592131 - 18592081
Alignment:
769 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    ||||||| || ||||||||| ||||||||||||| |||||||||| |||||    
18592131 gacaccggcacatataattacattgaattatgtaattttcttaaaatatta 18592081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 772 - 822
Target Start/End: Complemental strand, 30098381 - 30098331
Alignment:
772 accgacatatataattatattgaattatgtagttttcttaaattattaacg 822  Q
    |||||||| |||||||| ||||||||||||  |||||| ||||||||||||    
30098381 accgacatctataattacattgaattatgtgattttctcaaattattaacg 30098331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 731 - 819
Target Start/End: Original strand, 8423681 - 8423769
Alignment:
731 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    |||||||| |||| |||||| |||||  ||| ||||| ||||||||||| |||||||| | ||||||||||  |||||| |||||||||    
8423681 gattaggcgtgtcccggtgtcggacagctgtcgtgtccgacaccgacatttataattacactgaattatgtgattttctcaaattatta 8423769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 747 - 818
Target Start/End: Complemental strand, 9996920 - 9996849
Alignment:
747 gtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatt 818  Q
    |||| ||||| ||||| ||||||||||||| | ||||||||||| ||||||||||  |||||| ||||||||    
9996920 gtgtcggacacgtgttatgtctgacaccgagacatataattatactgaattatgtgattttctcaaattatt 9996849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 762 - 826
Target Start/End: Original strand, 11135288 - 11135352
Alignment:
762 tgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgt 826  Q
    |||||||||||  |||| || |||||||||||||||||||| |||||| ||| ||||| ||||||    
11135288 tgtgtctgacagtgacacatgtaattatattgaattatgtaattttctcaaactattagcgatgt 11135352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 752 - 819
Target Start/End: Complemental strand, 14134774 - 14134707
Alignment:
752 ggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    ||||| |||| |||| ||||||||||||||||||||| | ||||||||||  |||||| |||||||||    
14134774 ggacacgtgtcgtgtttgacaccgacatatataattacactgaattatgtgattttctcaaattatta 14134707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 762 - 819
Target Start/End: Complemental strand, 12985457 - 12985400
Alignment:
762 tgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    |||||| ||||||||||||||| |||| ||||||||||||  |||||| |||||||||    
12985457 tgtgtccgacaccgacatatatgattacattgaattatgtgattttctcaaattatta 12985400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 735 - 819
Target Start/End: Original strand, 20679362 - 20679446
Alignment:
735 aggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    |||| |||| |||||| ||||| |||||| ||||||||||||||  |||||||| | |||| |||||  |||||| |||||||||    
20679362 aggcgtgtcccggtgtcggacacgtgttgcgtctgacaccgacacttataattacactgaactatgtgattttctcaaattatta 20679446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 820
Target Start/End: Original strand, 4786339 - 4786390
Alignment:
769 gacaccgacatatataattatattgaattatgtagttttcttaaattattaa 820  Q
    |||||||||| ||||||||| | ||||||||||  |||||||||||||||||    
4786339 gacaccgacacatataattacactgaattatgtgattttcttaaattattaa 4786390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 764 - 819
Target Start/End: Original strand, 12606825 - 12606880
Alignment:
764 tgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    ||||||||||||||| ||||||||| |||||||||| |  |||||| |||||||||    
12606825 tgtctgacaccgacacatataattacattgaattatatgattttctcaaattatta 12606880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 775 - 821
Target Start/End: Original strand, 8798838 - 8798884
Alignment:
775 gacatatataattatattgaattatgtagttttcttaaattattaac 821  Q
    |||| ||||||||||||||||||||||  |||||| |||||||||||    
8798838 gacacatataattatattgaattatgttattttctcaaattattaac 8798884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 770 - 819
Target Start/End: Complemental strand, 7658520 - 7658471
Alignment:
770 acaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    ||||||||| ||||||||| | ||||||||||| |||||| |||||||||    
7658520 acaccgacaaatataattacactgaattatgtaattttctcaaattatta 7658471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 819
Target Start/End: Complemental strand, 26434261 - 26434188
Alignment:
746 ggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    ||||||||||| || |||||||  |||||||||  | |||||||||||||||||||  |||||| ||| |||||    
26434261 ggtgttggacacgtattgtgtccaacaccgacacttttaattatattgaattatgtgattttctcaaactatta 26434188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 781 - 826
Target Start/End: Original strand, 38278188 - 38278233
Alignment:
781 tataattatattgaattatgtagttttcttaaattattaacgatgt 826  Q
    |||||||||||| ||||||||  |||||||||||||||| ||||||    
38278188 tataattatattaaattatgtgattttcttaaattattagcgatgt 38278233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 769 - 819
Target Start/End: Complemental strand, 31026753 - 31026703
Alignment:
769 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    ||||||||||||||| |||| ||||||||||||  ||||||||||||||||    
31026753 gacaccgacatatatgattacattgaattatgtcattttcttaaattatta 31026703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 731 - 779
Target Start/End: Complemental strand, 27084365 - 27084317
Alignment:
731 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacat 779  Q
    |||||||| ||||||||||||||||| |||| ||||| |||||||||||    
27084365 gattaggcgtgtctcggtgttggacacgtgtcgtgtccgacaccgacat 27084317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 768 - 819
Target Start/End: Complemental strand, 34331446 - 34331395
Alignment:
768 tgacaccgacatatataattatattgaattatgtagttttcttaaattatta 819  Q
    ||||| ||| ||||||||||||||| |||||| || ||||||||||||||||    
34331446 tgacatcgaaatatataattatatttaattatataattttcttaaattatta 34331395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 774 - 813
Target Start/End: Original strand, 35973949 - 35973988
Alignment:
774 cgacatatataattatattgaattatgtagttttcttaaa 813  Q
    ||||||||||||||||||||||||||||  ||||||||||    
35973949 cgacatatataattatattgaattatgttattttcttaaa 35973988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 769 - 822
Target Start/End: Original strand, 17077013 - 17077065
Alignment:
769 gacaccgacatatataattatattgaattatgtagttttcttaaattattaacg 822  Q
    |||||| |||||||||||||||| ||||||| || |||| ||||||||||||||    
17077013 gacaccaacatatataattatatcgaattatataatttt-ttaaattattaacg 17077065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 781 - 834
Target Start/End: Original strand, 35447900 - 35447953
Alignment:
781 tataattatattgaattatgtagttttcttaaattattaacgatgttagcgtgt 834  Q
    |||| ||||| ||||||||||| ||||||| |||||||| |||||| |||||||    
35447900 tatagttatactgaattatgtaattttctttaattattagcgatgtcagcgtgt 35447953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 777 - 822
Target Start/End: Complemental strand, 41942155 - 41942110
Alignment:
777 catatataattatattgaattatgtagttttcttaaattattaacg 822  Q
    |||||||||||||| ||||||||||| |||||| ||||| ||||||    
41942155 catatataattatactgaattatgtaattttctcaaatttttaacg 41942110  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 770 - 822
Target Start/End: Complemental strand, 28907 - 28855
Alignment:
770 acaccgacatatataattatattgaattatgtagttttcttaaattattaacg 822  Q
    ||||||||| ||||||||| |||||||||||   |||||||||||||||||||    
28907 acaccgacacatataattacattgaattatgcgattttcttaaattattaacg 28855  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 731 - 821
Target Start/End: Complemental strand, 70374 - 70284
Alignment:
731 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaac 821  Q
    |||||||| ||||  ||||| ||||| |||| ||||| ||||||||||  |||||||| | ||||||||||  |||| | |||||||||||    
70374 gattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaattatgttattttttcaaattattaac 70284  T

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