View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4940-Insertion-5 (Length: 535)
Name: NF4940-Insertion-5
Description: NF4940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4940-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 326
Target Start/End: Complemental strand, 35922879 - 35922561
Alignment:
| Q |
8 |
agtgaagcatgcatgcaagtgaaaaacccttggaggaatttgttgcaaaggaaatataggcctcaactttctatggccatattgattccattcttccagc |
107 |
Q |
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| T |
35922879 |
agtgaagcatgcatgcaagtgaaaaacccttggaggaatttgttgcaaaggaaatataggcctcaactttctatggccatattgattccattcttccagc |
35922780 |
T |
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| Q |
108 |
aatttacaggaatcaatgttataatgttttatgcacctgtgctatttagttctgttgggtttaaggatgatgctgcccttatgtcatctgtgataactgg |
207 |
Q |
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| T |
35922779 |
aatttacaggaatcaatgttataatgttttatgcacctgtgctatttagttctgttgggtttgaggatgatgctgcccttatgtcatctgtgataactgg |
35922680 |
T |
|
| Q |
208 |
cgttgttaatgcttttggtaccattatctcaatttttggagttgatagattgggtaggagagccctttttcttgaaggtggtcttcaaatgctcatttgt |
307 |
Q |
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| T |
35922679 |
cgttgttaatgcttttggtaccattatctcaatttttggagttgatagattgggtaggagagccctttttcttgaaggtggccttcaaatgctcatttgt |
35922580 |
T |
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| Q |
308 |
caggtaactatgttgtgta |
326 |
Q |
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| T |
35922579 |
caggtaactatgttgtgta |
35922561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 396 - 535
Target Start/End: Complemental strand, 35922485 - 35922346
Alignment:
| Q |
396 |
ccaactatatttgttgatgtgcaaagattggagttgctgcatctattggagccaaatttggaattgatggaaaccctggtgagttaccaaagtggtatgc |
495 |
Q |
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| T |
35922485 |
ccaactatatttgttgatgtgcaaagattggagttgctgcatctattggagccaaatttggaattgatggaaaccctggtgagttaccaaagtggtatgc |
35922386 |
T |
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| Q |
496 |
aattgttgtggtgctattcatttgcgcttatgtagcagca |
535 |
Q |
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| T |
35922385 |
aattgttgtggtgctattcatttgcgcttatgtagcagca |
35922346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 20 - 315
Target Start/End: Original strand, 36202191 - 36202486
Alignment:
| Q |
20 |
atgcaagtgaaaaacccttggaggaatttgttgcaaaggaaatataggcctcaactttctatggccatattgattccattcttccagcaatttacaggaa |
119 |
Q |
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|||||||| ||||||||||||| ||||||||||| ||||||||||| ||||| ||| ||||||| ||||||| ||||||||||| ||||||||||| | |
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| T |
36202191 |
atgcaagttgaaaacccttggagaaatttgttgcagaggaaatatagacctcagcttactatggctgtattgataccattcttccaacaatttacaggca |
36202290 |
T |
|
| Q |
120 |
tcaatgttataatgttttatgcacctgtgctatttagttctgttgggtttaaggatgatgctgcccttatgtcatctgtgataactggcgttgttaatgc |
219 |
Q |
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| T |
36202291 |
tcaatgttatcatgttttatgcacctgtgctatttaattccattgggtttaaggacgatgcttcacttatgtcggctgtcatcaccggtgttgttaatgt |
36202390 |
T |
|
| Q |
220 |
ttttggtaccattatctcaatttttggagttgatagattgggtaggagagccctttttcttgaaggtggtcttcaaatgctcatttgtcaggtaac |
315 |
Q |
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| T |
36202391 |
tgttgctacttgtgtctcaatttatggagttgataagtggggtaggagagcccttttccttgaaggtggtgctcaaatgctcatatgccaggtaac |
36202486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 35490263 - 35490208
Alignment:
| Q |
92 |
attccattcttccagcaatttacaggaatcaatgttataatgttttatgcacctgt |
147 |
Q |
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|||||||||||||| ||| | || |||||||||||||| ||||||||||||||||| |
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| T |
35490263 |
attccattcttccaacaactcaccggaatcaatgttatcatgttttatgcacctgt |
35490208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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