View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4940-Insertion-6 (Length: 432)

Name: NF4940-Insertion-6
Description: NF4940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4940-Insertion-6
NF4940-Insertion-6
[»] chr8 (11 HSPs)
chr8 (7-393)||(7756352-7756737)
chr8 (322-393)||(2052958-2053029)
chr8 (300-390)||(15824634-15824725)
chr8 (297-393)||(29920262-29920359)
chr8 (355-391)||(7757797-7757833)
chr8 (341-393)||(7022397-7022449)
chr8 (341-393)||(7858642-7858694)
chr8 (341-393)||(26483646-26483698)
chr8 (233-309)||(29147316-29147392)
chr8 (341-393)||(34890168-34890220)
chr8 (146-178)||(40773597-40773629)
[»] chr3 (2 HSPs)
chr3 (341-393)||(54464848-54464900)
chr3 (271-387)||(26724949-26725066)
[»] chr7 (4 HSPs)
chr7 (272-393)||(19912761-19912883)
chr7 (336-393)||(2633329-2633386)
chr7 (341-393)||(18102646-18102698)
chr7 (341-393)||(37767011-37767063)
[»] chr4 (4 HSPs)
chr4 (272-389)||(35310732-35310850)
chr4 (272-393)||(5483264-5483386)
chr4 (341-393)||(4058829-4058881)
chr4 (341-393)||(29203620-29203672)
[»] chr1 (5 HSPs)
chr1 (297-382)||(3861699-3861785)
chr1 (272-393)||(52841438-52841560)
chr1 (341-393)||(15959633-15959685)
chr1 (297-393)||(25990815-25990912)
chr1 (341-393)||(35691509-35691560)
[»] scaffold0062 (1 HSPs)
scaffold0062 (341-393)||(44764-44816)
[»] chr6 (1 HSPs)
chr6 (341-393)||(9428861-9428913)
[»] chr2 (6 HSPs)
chr2 (297-393)||(7645219-7645316)
chr2 (341-393)||(6110191-6110243)
chr2 (297-364)||(29514040-29514108)
chr2 (297-364)||(29514496-29514564)
chr2 (341-393)||(35023014-35023066)
chr2 (297-393)||(40808712-40808808)
[»] chr5 (3 HSPs)
chr5 (341-393)||(6686501-6686553)
chr5 (341-393)||(20039218-20039270)
chr5 (341-393)||(20644130-20644182)


Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 393
Target Start/End: Original strand, 7756352 - 7756737
Alignment:
Q  7 aaatttcaactttggggtgaatgcatgagactagagtagcgggtgagcgcatgcatgagaaacagtcaataaagcacgttcaatgcacatacttcttcgg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7756352 aaatttcaactttggggtgaatgcatgagactagagtagcgggtgagcgcatgcatgagaaacagtcaataaagcacgttcaatgcacatacttcttcgg 7756451  T
Q  107 tctcaaattataaagnnnnnnncttatttttcctgttaaaagtaaaaaagactaacttttaccctatttaattatcttgtttnnnnnnnnncataatttc 206  Q
    |||||||||||||||       ||||||||||||||||||||||||||| | ||||||||||| ||||||||||| ||||||         |||||||||    
T  7756452 tctcaaattataaagaaaaaaacttatttttcctgttaaaagtaaaaaa-attaacttttaccttatttaattattttgtttaaaaaaaaacataatttc 7756550  T
Q  207 cgagaattcttttaccttattttcataaattaaatgtaaattgcgtttaattttatctacatcatattttctctataaccaacaaacaaagaaaattgtt 306  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7756551 caagaattcttttaccttattttcataaattaaatgtaaattgcgtttaattttatctacatcatattttctctataaccaacaaacaaagaaaattgtt 7756650  T
Q  307 tttacctttttcatgaaacttattctagtgagagcacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7756651 tttacctttttcatgaaacttattctagtgagagcacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 7756737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 393
Target Start/End: Original strand, 2052958 - 2053029
Alignment:
Q  322 aaacttattctagtgagagcacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    ||||||||||||  || | |||||||| ||||||||| ||||||| |||||||| ||||||||||| |||||    
T  2052958 aaacttattctaaagaaaacacaaaaaattatacttctaattattatgttttagttttcttaataagtgtga 2053029  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 390
Target Start/End: Complemental strand, 15824725 - 15824634
Alignment:
Q  300 aattgtttttacctttttc-atgaaacttattctagtgagagcacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatg 390  Q
    |||||||||||| | |||| |||||||||||||||  || | ||||||||  ||||||||||||| || |||||||| ||||||| ||||||    
T  15824725 aattgtttttacatctttccatgaaacttattctaaagaaaacacaaaaaactatacttcaaattcttatgttttagttttcttactaaatg 15824634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 393
Target Start/End: Complemental strand, 29920359 - 29920262
Alignment:
Q  297 gaaaattgtttttacctttttc-atgaaacttattctagtgagagcacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    ||||||||||||||| | || | ||||||||||||| |  || | |||||||| || ||||||||||| || |||||||| ||||||||||| |||||    
T  29920359 gaaaattgtttttacatcttcccatgaaacttattccaaagataacacaaaaaattgtacttcaaattcttatgttttagttttcttaataagtgtga 29920262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 7757797 - 7757833
Alignment:
Q  355 cttcaaattattgtgttttaggtttcttaataaatgt 391  Q
    |||||||||||||| ||||||||||||||||||||||    
T  7757797 cttcaaattattgtattttaggtttcttaataaatgt 7757833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 393
Target Start/End: Complemental strand, 7022449 - 7022397
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    ||||||||  |||||| |||||| || |||||||| |||||||||||||||||    
T  7022449 cacaaaaaactatactccaaatttttatgttttagttttcttaataaatgtga 7022397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 7858642 - 7858694
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    ||||||||  |||||| |||||| || |||||||| |||||||||||||||||    
T  7858642 cacaaaaaactatactccaaattcttatgttttagttttcttaataaatgtga 7858694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 26483646 - 26483698
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    ||||||||  ||||||||||||| || |||||||| ||||||||||| |||||    
T  26483646 cacaaaaaactatacttcaaattcttatgttttagttttcttaataagtgtga 26483698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 29147392 - 29147316
Alignment:
Q  233 aaattaaatgtaaattgcgtttaattttatctacatcatattttctctataaccaacaaacaaagaaaattgttttt 309  Q
    |||||||||| ||| ||| |||||||| |||| |||   ||||||||||||| ||||||  || |||||||||||||    
T  29147392 aaattaaatgcaaactgcatttaatttgatctccatttcattttctctataatcaacaactaatgaaaattgttttt 29147316  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 393
Target Start/End: Complemental strand, 34890220 - 34890168
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    |||||||| ||||||| |||||| || |||||||| ||||||||||| |||||    
T  34890220 cacaaaaaattatactccaaattcttatgttttagttttcttaataagtgtga 34890168  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 40773629 - 40773597
Alignment:
Q  146 aagtaaaaaagactaacttttaccctatttaat 178  Q
    |||||||||||| ||||||||||||||||||||    
T  40773629 aagtaaaaaagattaacttttaccctatttaat 40773597  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 393
Target Start/End: Complemental strand, 54464900 - 54464848
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    |||||||| |||||||||||||| || |||||||| |||||||||||||||||    
T  54464900 cacaaaaaattatacttcaaattcttatgttttagttttcttaataaatgtga 54464848  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 387
Target Start/End: Complemental strand, 26725066 - 26724949
Alignment:
Q  271 tattttctctataaccaacaaacaaagaaaattgtttttacctttt-tcatgaaacttattctagtgagagcacaaaaagttatacttcaaattattgtg 369  Q
    ||||||||| |||| ||| || ||| ||||||||||||||| | || |||  |||||||||| |  || | |||||||| |||||||||||||| || |     
T  26725066 tattttctccataatcaataaccaatgaaaattgtttttacatcttctcagaaaacttattccaaagaaaacacaaaaaattatacttcaaattcttata 26724967  T
Q  370 ttttaggtttcttaataa 387  Q
    |||||| |||||||||||    
T  26724966 ttttagttttcttaataa 26724949  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 393
Target Start/End: Complemental strand, 19912883 - 19912761
Alignment:
Q  272 attttctctataaccaacaaacaaagaaaattgtttttacctttttc-atgaaacttattctagtgagagcacaaaaagttatacttcaaattattgtgt 370  Q
    ||||| || |||||||| || ||| ||||||||||||||| |||| | || |||||| ||| |  || | ||||||||  |||||| |||||| || |||    
T  19912883 attttttccataaccaataaccaatgaaaattgtttttacattttactataaaactttttccaaagaaaacacaaaaaactatactccaaattcttatgt 19912784  T
Q  371 tttaggtttcttaataaatgtga 393  Q
    ||||| |||||||||||||||||    
T  19912783 tttagttttcttaataaatgtga 19912761  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 393
Target Start/End: Complemental strand, 2633386 - 2633329
Alignment:
Q  336 gagagcacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    |||| ||| ||||||| ||| | |||||||| |||||||| |||||||||||||||||    
T  2633386 gagaacaccaaaagttttacctaaaattattatgttttagttttcttaataaatgtga 2633329  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 18102646 - 18102698
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    |||||||| ||||||| |||||| || |||||||| ||||||||||| |||||    
T  18102646 cacaaaaaattatactccaaattcttatgttttagttttcttaataagtgtga 18102698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 393
Target Start/End: Complemental strand, 37767063 - 37767011
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    ||||||||  |||||| ||||||||  |||||||| |||||||||||||||||    
T  37767063 cacaaaaaactatactccaaattatcatgttttagttttcttaataaatgtga 37767011  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 389
Target Start/End: Complemental strand, 35310850 - 35310732
Alignment:
Q  272 attttctctataaccaacaaacaaagaaaattgtttttacctttttc-atgaaacttattctagtgagagcacaaaaagttatacttcaaattattgtgt 370  Q
    ||||| || |||||||| |  ||| ||||||||||||||| | |||| |||||||||||||||  || | ||||||||  ||| || |||||| || |||    
T  35310850 attttttccataaccaatagccaatgaaaattgtttttacatctttccatgaaacttattctaaagaaaacacaaaaaactatgctacaaattcttatgt 35310751  T
Q  371 tttaggtttcttaataaat 389  Q
    ||||| |||||||||||||    
T  35310750 tttagttttcttaataaat 35310732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 393
Target Start/End: Complemental strand, 5483386 - 5483264
Alignment:
Q  272 attttctctataaccaacaaacaaagaaaattgtttttacctttttc-atgaaacttattctagtgagagcacaaaaagttatacttcaaattattgtgt 370  Q
    |||||||| |||||||  |  ||| ||||||||||||||| | || | || ||||||||| ||  || | |||||||| |||||||||||||| || |||    
T  5483386 attttctccataaccagtagccaatgaaaattgtttttacatcttcctattaaacttattttaaagaaaacacaaaaaattatacttcaaatttttatgt 5483287  T
Q  371 tttaggtttcttaataaatgtga 393  Q
    ||||| |||||||| || |||||    
T  5483286 tttagttttcttaacaagtgtga 5483264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 4058829 - 4058881
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    ||||||||  |||||| |||||| || |||||||| |||||||||||||||||    
T  4058829 cacaaaaaactatactccaaattcttatgttttagttttcttaataaatgtga 4058881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 29203620 - 29203672
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    |||||||| ||||||| |||||| || |||||||| ||||||||||| |||||    
T  29203620 cacaaaaaattatactccaaattcttatgttttagttttcttaataagtgtga 29203672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 382
Target Start/End: Complemental strand, 3861785 - 3861699
Alignment:
Q  297 gaaaattgtttttacctttttca-tgaaacttattctagtgagagcacaaaaagttatacttcaaattattgtgttttaggtttctt 382  Q
    ||||||||||||||| | ||||| | ||||||||||||  || | || ||||| ||||||||||||||||| |||||||| ||||||    
T  3861785 gaaaattgtttttacatctttcaataaaacttattctaaagaaaacataaaaaattatacttcaaattattatgttttagttttctt 3861699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 393
Target Start/End: Complemental strand, 52841560 - 52841438
Alignment:
Q  272 attttctctataaccaacaaacaaagaaaattgtttttacctttttc-atgaaacttattctagtgagagcacaaaaagttatacttcaaattattgtgt 370  Q
    |||||| ||||||| || || ||| |||||||||||| || | |||| |||||||||||| ||  || |  |||| ||  |||||| |||| ||||||||    
T  52841560 attttccctataactaataaccaatgaaaattgttttaacatctttctatgaaacttattttaaggataagacaagaaactatactacaaactattgtgt 52841461  T
Q  371 tttaggtttcttaataaatgtga 393  Q
    ||||| |||||||||||||||||    
T  52841460 tttagttttcttaataaatgtga 52841438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 393
Target Start/End: Complemental strand, 15959685 - 15959633
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    |||||||| ||||||| |||||| || |||||||| |||||||||||||||||    
T  15959685 cacaaaaaattatactccaaattcttatgttttagttttcttaataaatgtga 15959633  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 393
Target Start/End: Original strand, 25990815 - 25990912
Alignment:
Q  297 gaaaattgtttttacctttttc-atgaaacttattctagtgagagcacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    ||||||| ||||||| | |||| ||||||||||||| |  |||| |||||||| |||||| |||||| | |  || |||| |||||||||||||||||    
T  25990815 gaaaattatttttacatatttccatgaaacttattccaaggagaacacaaaaaattatacctcaaatcactaagtgttagttttcttaataaatgtga 25990912  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 35691509 - 35691560
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    |||||||| ||||||| |||||| || |||||||| |||||||||||||||||    
T  35691509 cacaaaaaattatactccaaattcttatgttttag-tttcttaataaatgtga 35691560  T

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Target: scaffold0062 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 393
Target Start/End: Complemental strand, 44816 - 44764
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    ||||||||  |||||| ||||||||| |||||||| |||||||||||||||||    
T  44816 cacaaaaaaatatactccaaattattatgttttagttttcttaataaatgtga 44764  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 9428861 - 9428913
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    |||||||| |||||||||||||| || |||||||| ||| |||||||||||||    
T  9428861 cacaaaaaattatacttcaaattcttatgttttagttttattaataaatgtga 9428913  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 393
Target Start/End: Complemental strand, 7645316 - 7645219
Alignment:
Q  297 gaaaattgtttttacctttttc-atgaaacttattctagtgagagcacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    ||||||||||||||| | || | |||||| ||||||||  || | |||||||  ||||||| |||||| || |||||||| ||||||||||| |||||    
T  7645316 gaaaattgtttttacatgttcccatgaaatttattctaaggaaaacacaaaatattatactccaaattcttatgttttagttttcttaataagtgtga 7645219  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 393
Target Start/End: Complemental strand, 6110243 - 6110191
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    ||||||||| |||||| |||||| || |||||||| ||||||||||| |||||    
T  6110243 cacaaaaagctatactccaaattcttatgttttagttttcttaataagtgtga 6110191  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 364
Target Start/End: Complemental strand, 29514108 - 29514040
Alignment:
Q  297 gaaaattgtttttacct-ttttcatgaaacttattctagtgagagcacaaaaagttatacttcaaatta 364  Q
    ||||||| ||||||| | ||||||||||| ||||||||  |||| |||||||| |||||| ||||||||    
T  29514108 gaaaattatttttacatcttttcatgaaatttattctaaggagaacacaaaaaattatacctcaaatta 29514040  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 364
Target Start/End: Complemental strand, 29514564 - 29514496
Alignment:
Q  297 gaaaattgtttttacct-ttttcatgaaacttattctagtgagagcacaaaaagttatacttcaaatta 364  Q
    ||||||| ||||||| | ||||||||||||||||||||  || | |||||||| |||||| ||||||||    
T  29514564 gaaaattatttttacatcttttcatgaaacttattctaaggataacacaaaaaattatacctcaaatta 29514496  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 35023014 - 35023066
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    |||||||| ||||||| |||||| || |||||||| ||||||||||| |||||    
T  35023014 cacaaaaaattatactccaaattcttatgttttagttttcttaataagtgtga 35023066  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 393
Target Start/End: Complemental strand, 40808808 - 40808712
Alignment:
Q  297 gaaaattgtttttacctttttcatgaaacttattctagtgagagcacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    ||||||||||||||| | || |||||||||||||| |  || | ||||||||  ||| || |||||| || || ||||| ||||||||||| |||||    
T  40808808 gaaaattgtttttacatcttccatgaaacttattccaaagaaaacacaaaaaactatgctacaaattcttatgctttagttttcttaataagtgtga 40808712  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 6686501 - 6686553
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    ||||||||  |||||| |||||| || |||||||| |||||||||||||||||    
T  6686501 cacaaaaaactatactccaaattcttatgttttagttttcttaataaatgtga 6686553  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 20039218 - 20039270
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    |||||||| ||||||| |||||| || |||||||| ||||||||||| |||||    
T  20039218 cacaaaaaattatactccaaattcttatgttttagttttcttaataagtgtga 20039270  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 20644130 - 20644182
Alignment:
Q  341 cacaaaaagttatacttcaaattattgtgttttaggtttcttaataaatgtga 393  Q
    |||||||| ||||||| |||||| || |||||||| ||||||||||| |||||    
T  20644130 cacaaaaaattatactccaaattcttatgttttagttttcttaataagtgtga 20644182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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