View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4940-Insertion-7 (Length: 410)
Name: NF4940-Insertion-7
Description: NF4940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4940-Insertion-7 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 410
Target Start/End: Original strand, 21622760 - 21623163
Alignment:
| Q |
8 |
catgggattaactgtccgaacaattgtgttttattcaatggaggaacgggagacaatacgatggactggatagtctcatagaccaaaataatcatgacta |
107 |
Q |
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| T |
21622760 |
catgggattaactgtccgaacaattgtgttttattcaatggaggaacgggaaacaatacgatggactggatagtctcatagaccaaaataatcatggcta |
21622859 |
T |
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| Q |
108 |
taatgttgaagtggtggaacagatgtttgatccagaggtaagagaacctcatacttattaccctttaattgaatcggtgtataaggataaattaatttgg |
207 |
Q |
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| T |
21622860 |
taatgttgaagtggtggaacagatgtttgatccagaggtaagagaacctcatacttattaccctttaattcaatcggtgtataaggataaattaatttgg |
21622959 |
T |
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| Q |
208 |
aaggcggaaaaagatgggcaatatttagtgcggagttcatatagactttgtgttaatactattgtagataactcccatattcataag-cgagtggatgga |
306 |
Q |
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| T |
21622960 |
aaggcggaaaaagatgggcaatatttagtgcggagttcatatagactttgtgttaatactattgtagataactcccatcttcataagccgagtggatgga |
21623059 |
T |
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| Q |
307 |
acgaaatttggaagcttgaagtcccttcaaaagtgaataacttcatttggagagtatgtcgtaattgcttgccaacatgggcaaggctcacatatagagg |
406 |
Q |
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| T |
21623060 |
acgaaatttggaagcttgaagtcccttcaaaagtgaataacttcgtttggagagtatgtcgtaattgtctgccaacatgggcaaggctcacatatagagg |
21623159 |
T |
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| Q |
407 |
tata |
410 |
Q |
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| T |
21623160 |
tata |
21623163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 130 - 410
Target Start/End: Complemental strand, 48816447 - 48816167
Alignment:
| Q |
130 |
atgtttgatccagaggtaagagaacctcatacttattacc-ctttaattgaatcggtgtataaggataaattaatttggaaggcggaaaaagatgggcaa |
228 |
Q |
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|||||||||| |||||||| | ||||||||||||| |||| |||||||| ||| || | |||||||||||||||||||||||||| | ||| ||||| || |
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| T |
48816447 |
atgtttgatctagaggtaaca-aacctcatacttaatacctctttaattcaattggcgcataaggataaattaatttggaaggcgtagaaatatgggaaa |
48816349 |
T |
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| Q |
229 |
tatttagtgcggagttcatatagactttgtgttaatactattgtagataactcccatattcataagcgagtggatggaacgaaatttggaagcttgaagt |
328 |
Q |
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| T |
48816348 |
tattcagtgcggaatgcatataaattttgtttggatactattgcatacaacatcaatcttcataagttggtgtatggaacaacgtttggaagcataaaat |
48816249 |
T |
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| Q |
329 |
cccttcaaaagtgaataacttcatttggagagtatgtcgtaattgcttgccaacatgggcaaggctcacatatagaggtata |
410 |
Q |
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| T |
48816248 |
ccctcctaaagtgaagaatttcatttggagagtttgtcgtgattgtttgctaacgaggtcgaggctcacgaatagaggtata |
48816167 |
T |
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