View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4940-Insertion-8 (Length: 219)
Name: NF4940-Insertion-8
Description: NF4940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4940-Insertion-8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 46784946 - 46785158
Alignment:
| Q |
7 |
acgttgtactaataatctattaattctatacaatgtatttttatgttattgtcacgaaatgacggaacttacaacaaaattataatgactccgagtttgg |
106 |
Q |
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| T |
46784946 |
acgttgtactaataatctattaattctatacaatgtatttttaagttattgtcacgaaatgacggaacttacaacaaaattataatgactccgagtttgg |
46785045 |
T |
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| Q |
107 |
gaactaagagtaatgaaagaataaatcaacaaagtttggaacaattttttgtaaaacaacattttcatgaaagaaactatgttgagctcgttgtataatg |
206 |
Q |
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| T |
46785046 |
gaactaagagtaatgaaagaataaatcaacaaagtttggaacaattctttgtaaaacgacattttcatgaaagaaactatgttgagctcgttgtataatg |
46785145 |
T |
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| Q |
207 |
ctattgtgaataa |
219 |
Q |
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| T |
46785146 |
ctattgtgaataa |
46785158 |
T |
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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 46793396 - 46793483
Alignment:
| Q |
98 |
cgagtttgggaactaagagtaatgaaagaataaatcaacaaagtttgga---acaattttttgtaaaacaacattttcatgaaagaaa |
182 |
Q |
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| T |
46793396 |
cgagtttgggaactaagagcaatcaaagagaaaatcaacagaatttggaggaacaattctttgtaaaacgacattttcatgaaagaaa |
46793483 |
T |
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