View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4940_high_1 (Length: 470)
Name: NF4940_high_1
Description: NF4940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4940_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 39 - 453
Target Start/End: Complemental strand, 1793215 - 1792801
Alignment:
| Q |
39 |
catatctttcctacatttgaggtaatcttatttgagacatgtcgtacgataaatatgaaattctctatcgttgagtttctgtcatatattgatttgatat |
138 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||||| |||||||||||| ||||| |
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| T |
1793215 |
catatctttcctacaattaaggtaatcttatttgagacatgtcgtacgctaaatatgaacttctctatcgcttagtttctgacatatattgattcgatat |
1793116 |
T |
|
| Q |
139 |
gttatgaaagactccttatgctaaattcaaccacgttggttgactgagtgcatttagtaatatgtaattataaatagagtaatgatgcattgaccaccct |
238 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1793115 |
gttataaaagactccttatgctaaattcaaccacgttggttgactgagtgcatttagtaatatgtaattataaatagagcaatgatgcattgaccaccct |
1793016 |
T |
|
| Q |
239 |
atatggcaaccctccatgattcgaattccttgcaggttaggttttccacattattcatacagtcagatgcattgtttgtggatggatcgaaatcggagga |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
1793015 |
atatggcaaccctccatgattcgaattccttgcaggttaggttttccacattattcatacagtcagatgcattgtttgtcgatggatcaaaatcggagga |
1792916 |
T |
|
| Q |
339 |
tgtaggtttcatgcagnnnnnnnnaatctagaaaaaccaaatataaaatttgcgtgaatgcaggaaatctgcatgaattggaatccctattaaagggcag |
438 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1792915 |
tgtaggtttcatgcagttttttttaatctagaaaaaccaaatataaaatttgcgtgaatgcaggaaatctgcatgaattggaatccctattaaagcgcag |
1792816 |
T |
|
| Q |
439 |
tatatggtaggtaac |
453 |
Q |
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||||||||||||||| |
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| T |
1792815 |
tatatggtaggtaac |
1792801 |
T |
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