View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4940_high_2 (Length: 390)
Name: NF4940_high_2
Description: NF4940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4940_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 29340109 - 29339757
Alignment:
| Q |
18 |
gttttcatatctatttatgcattatattagagaggctttcatcaagcttgttgaaatttaactttaaggggaacatcacttaaagccaaacgcttatttc |
117 |
Q |
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| T |
29340109 |
gttttcatatctatttatgcattatattagagaggctttcatcaagcttgttgaaatttaactttaaggggaacatcgcttaaagccaaacgcttatttc |
29340010 |
T |
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| Q |
118 |
cattttcatcaacaaatactccaacatccttacacatatgcttgaaagactgcaccacactagggcaaaacaccaacttataagcatcaccatatttctc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29340009 |
cattttcatcaacaaatactccaacatccttacacatatgcttgaaagactgcaccacactagggcaaaacaccaacttataagcatcaccatacttctc |
29339910 |
T |
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| Q |
218 |
aatcttaaaccaattattaatggtttcccatcccggatttccagcaacaccaccaatagtaataaaccattgtctcttagaaacataaaaacgatcaagc |
317 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
29339909 |
aatcttgaaccaattattaatggtttcccatcccggatttccagcaacaccaccaatagtaataaaccattgtctcttagatacattaaaacgatcaagc |
29339810 |
T |
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| Q |
318 |
ttccataccatagaatggtgtagacaagtagcacgagatgagaatttgatgtt |
370 |
Q |
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| T |
29339809 |
ttccacaccatggaatggtgtagacaagtagcacgagatgagaatttgatgtt |
29339757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 29342810 - 29343162
Alignment:
| Q |
18 |
gttttcatatctatttatgcattatattagagaggctttcatcaagcttgttgaaatttaactttaaggggaacatcacttaaagccaaacgcttatttc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29342810 |
gttttcatatctatttatgcattatattagagaggctttcatcaagcttgttgaaatttaactttaaggggaacatcgcttaaagccaaacgcttatttc |
29342909 |
T |
|
| Q |
118 |
cattttcatcaacaaatactccaacatccttacacatatgcttgaaagactgcaccacactagggcaaaacaccaacttataagcatcaccatatttctc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29342910 |
cattttcatcaacaaatactccaacatccttacacatatgcttgaaagactgcaccacactagggcaaaacaccaacttataagcatcaccatacttctc |
29343009 |
T |
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| Q |
218 |
aatcttaaaccaattattaatggtttcccatcccggatttccagcaacaccaccaatagtaataaaccattgtctcttagaaacataaaaacgatcaagc |
317 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
29343010 |
aatcttgaaccaattattaatggtttcccatcccggatttccagcaacaccaccaatagtaataaaccattgtctcttagatacattaaaacgatcaagc |
29343109 |
T |
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| Q |
318 |
ttccataccatagaatggtgtagacaagtagcacgagatgagaatttgatgtt |
370 |
Q |
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| T |
29343110 |
ttccacaccatggaatggtgtagacaagtagcacgagatgagaatttgatgtt |
29343162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 29378863 - 29378806
Alignment:
| Q |
173 |
cacactagggcaaaacaccaacttataagcatcaccatatttctcaatcttaaaccaa |
230 |
Q |
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|||| |||||||| | ||||||||||||||||| |||| ||||||||||| |||||| |
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| T |
29378863 |
cacattagggcaatagaccaacttataagcatcttcatacttctcaatcttgaaccaa |
29378806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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