View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4940_high_5 (Length: 247)
Name: NF4940_high_5
Description: NF4940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4940_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 28675848 - 28675630
Alignment:
| Q |
14 |
caaaggcagaggaagaacaagatcaaagtctaactctatgttcttaatcctaaggaaaaagaacactacttccattgaaaccaaagaaccttcttcccct |
113 |
Q |
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| T |
28675848 |
caaaagcagaggaagaacaagatcaaagtctaactctatgttcttaatcctaaggaaaaagaacactacttccattgaaaccaaagaaccttcttcccct |
28675749 |
T |
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| Q |
114 |
aaagtcacttgcatgggtcaagttcgagttaaacgctcctccaaacaacccaccactaaaaagggtcgtccctcctccggtgacggagctccgagtaaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28675748 |
aaagtcacttgcatgggtcaagttcgagttaaacgctcctccaaacaacccaccactaaaaagggtcgtccctcctccggtgacggagctccgagtaaat |
28675649 |
T |
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| Q |
214 |
gccgctgccgtttttggtg |
232 |
Q |
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||||||||| ||||||||| |
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| T |
28675648 |
gccgctgccctttttggtg |
28675630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 40638109 - 40638148
Alignment:
| Q |
97 |
aagaaccttcttcccctaaagtcacttgcatgggtcaagt |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
40638109 |
aagaaccttcttcccctaaagtcacttgcatgggtcaagt |
40638148 |
T |
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