View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4940_low_2 (Length: 411)
Name: NF4940_low_2
Description: NF4940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4940_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 49271548 - 49271929
Alignment:
| Q |
1 |
tcaatgatgatggttggtcatttgggtaaagttgctctttctaccacagctattgctatctctctctatggtgtctctggcttcagtcttcttgtaagtc |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271548 |
tcaatgatgatggttggtcatttgggtaaacttgctctttctaccacagctattgctatctctctctatggtgtctctggcttcagtcttcttgtaagtc |
49271647 |
T |
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| Q |
101 |
ttcttttcccttattatgtctagttaaaaaatatatatttcagaaatgaaagtaaaatttatgtcctgttggtcaattctatttgtcgagagtcttatca |
200 |
Q |
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| T |
49271648 |
ttcttttcccttattatgtctagttaaaaaatatatatttcagaaat-----------ttatgtcctgttggtcaactctatttgtcgagagtcttatca |
49271736 |
T |
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| Q |
201 |
actactgaacgactctcggctcaccnnnnnnngaagaataatggctctcgataaataaagtgtgacctatatgacataagttttagattttatggaaata |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271737 |
actactgaacgactctcggctcaccaaaaaaagaagaataatggctctcgataaataaagtgtgacctatatgacataagttttagattttatggaaata |
49271836 |
T |
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| Q |
301 |
aatttaacttttttaaacctctggcacaaccgtcttctcattctaaactttcttgttgaacttccctttaccaagattgaaacttatgtctct |
393 |
Q |
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| T |
49271837 |
aatttaacttttttaaacctctggcacaaccgtcttctcattctaaactttcttgttgaacttcccttaaccaagattgaaacttatgtctct |
49271929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 49254880 - 49254984
Alignment:
| Q |
1 |
tcaatgatgatggttggtcatttgggtaaagttgctctttctaccacagctattgctatctctctctatggtgtctctggcttcagtcttcttgtaagtc |
100 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
49254880 |
tcaatgatgatggttggtcatttgggtaaactttctctttctagcacagctattgctatctctctctgtgttgtctctggcttcagtcttcttgtaagtc |
49254979 |
T |
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| Q |
101 |
ttctt |
105 |
Q |
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||||| |
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| T |
49254980 |
ttctt |
49254984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 49267142 - 49267240
Alignment:
| Q |
1 |
tcaatgatgatggttggtcatttgggtaaagttgctctttctaccacagctattgctatctctctctatggtgtctctggcttcagtcttcttgtaagt |
99 |
Q |
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|||||||| |||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49267142 |
tcaatgataatggttggtcgtttgggtaaacttgctctttctagcacagctattgctatctctctctgtggtgtctctggcttcagtcttcttgtaagt |
49267240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 49274696 - 49274607
Alignment:
| Q |
1 |
tcaatgatgatggttggtcatttgggtaaagttgctctttctaccacagctat----tgctatctctctctatggtgtctctggcttcag |
86 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||| ||||||||| |||||||||||| | || ||||||||||||||| |
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| T |
49274696 |
tcaatgatgatggttggtcatttgggtaaactttctctttctagcacagctattgcttgctatctctctttgtgctgtctctggcttcag |
49274607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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