View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4940_low_4 (Length: 377)
Name: NF4940_low_4
Description: NF4940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4940_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 361
Target Start/End: Complemental strand, 25215499 - 25215141
Alignment:
| Q |
13 |
aatatacaaaagaatataagttaaaacaaaagaataagatagaagattatgatttattgttcgactcaaagaggaaaaaactgaaatggatcaacctaag |
112 |
Q |
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| T |
25215499 |
aatatacaaaagaaaataagttaaaacaaaagaataagatagaagattatgatttattgttcgactcaaagaggaaaaaactgaaatggatcaacctaag |
25215400 |
T |
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| Q |
113 |
aaacaaagaaaaattaaaacctgcattagtaaactttaaggaattatggacttcacatatgaaccaa---------tctctgctctttgtgaaaggttaa |
203 |
Q |
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| T |
25215399 |
aaacaaagaaaaattaaaacctgcattagtaaactttaaggaattatggacttcacatattcaccaattcaactattctctgctctttgtgaaaggttaa |
25215300 |
T |
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| Q |
204 |
ctggttattttaaacatgaaagtgatcacaatcatcaannnnnnnnnaaaaatgttggcaattttgaccgtgacat---ataaaaatgtatgtttcttcg |
300 |
Q |
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| T |
25215299 |
ctggttattttaaatatgaaagtgatcacaatcatcaa-ttttttttaaaaatgttggcaattttg-ccgtgacataaaaaaaaaatgtatgtttcttcg |
25215202 |
T |
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| Q |
301 |
actacaagtaacatcgtattagccacttttgttcttgatccctaaattccaacacattttc |
361 |
Q |
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| T |
25215201 |
actacaagtaacatcatattagccacttttgtccttgatccctaaattccaacacattttc |
25215141 |
T |
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