View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4941-Insertion-1 (Length: 930)
Name: NF4941-Insertion-1
Description: NF4941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4941-Insertion-1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 816; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 816; E-Value: 0
Query Start/End: Original strand, 12 - 921
Target Start/End: Complemental strand, 45209881 - 45208971
Alignment:
| Q |
12 |
taacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatc |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209881 |
taacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatc |
45209782 |
T |
|
| Q |
112 |
tttctatagcgagaatattgtaccctgcccgaactgttcatgcgcctgccaagacaactcatttcaatcaggaagttgtatagagtaagatttcattact |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45209781 |
tttctatagcgagaatattgtaccctgcccgaactgttcatgcgcctgccaagacaactcatttcaatcaggaagttgtatagagtaagatttcattact |
45209682 |
T |
|
| Q |
212 |
tttttgacactgtgatttccttctaaattgtaattaattgtgatttccttctaaattgtaattaatagagtaaataaatgtgttagtctttgacaccgcg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45209681 |
tttttgacactgtgatttccttctaaattgtaattaattgtgatttccttctaaattgtaattaatagagtaaataaatgtgttagtctttgacaccgcg |
45209582 |
T |
|
| Q |
312 |
atttctcactttagtccttgaaattgtaaaaagactgaaattaatattatacactcacatgtttccttttcatgtgtggttacagttcaagtaattcatc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209581 |
atttctcactttagtccttgaaattgtaaagggactgaaattaatattatacactcacatgtttccttttcatgtgtggttacagttcaagtaattcatc |
45209482 |
T |
|
| Q |
412 |
gaatttggcctcgattgttaacagccctggagagaaaggtgttgagcctttagttgaatgtactaggcatatgtgtccgattaaagttcactggcacatt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45209481 |
gaatttggcctcgattgttaacagccctggagagaaaggtgttgagcctttagttgaatgtactaggcatatgtgtccgattaaagttcactggcacatt |
45209382 |
T |
|
| Q |
512 |
aagcataactactatgagtattggcgcgtgaagattaccgtttttaatttcaattacagaaagaattactcagactggatcgtggttgttcaacatccaa |
611 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
45209381 |
aagtataactactatgagtattggcgcgtgaagattaccgtttttaatttcaattacagaaagaattactcagactggaacgtggttgttcaacatccaa |
45209282 |
T |
|
| Q |
612 |
attttgataaattgacacaaattttcagttacaactacaaatcattagctccatatggatcaaacaaggtaagtttgtgtttgttcattatattc-aagg |
710 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
45209281 |
attttgataaattgacacaaattttcagttacaactacaaatcattagctccatatggatc-aacaa-gtaagtttgtgtttgttcattatattcaaagg |
45209184 |
T |
|
| Q |
711 |
ttttgctatcttatcaatat--aaatcaatgatgtactaatgaaaaactggtcttaacagatgatactgcaatgctttggggagttaaatttttcaatga |
808 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
45209183 |
ttttgctatcttatcaatataaaaatcaatgatgtactaatgaaaaactggtcttaacagatgatactgtaatgctttggggagttaaatttttcaatga |
45209084 |
T |
|
| Q |
809 |
tgtactcatgc-agctggtcctaatggtaacgtacagtcggagctacttttttcgaaagagt-aatccagttttagtttccgtagccggctggggtttcc |
906 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | |||| ||||||||||||||||| |||||||||||| | |
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|
| T |
45209083 |
tgtactcatgcaagctggtcctaatggtaacgtacagtcggagctac-tttttcgaaagaataaatcaagttttagtttccgtag-cggctggggttttc |
45208986 |
T |
|
| Q |
907 |
cggagaagatttatt |
921 |
Q |
| |
|
||||||||||||||| |
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|
| T |
45208985 |
cggagaagatttatt |
45208971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 8e-42; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 5550497 - 5550696
Alignment:
| Q |
12 |
taacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatc |
111 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| ||| || |||||| ||| || ||| |||||||||| |
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|
| T |
5550497 |
taacataactctgattgtttgcagtgacatggaatgtgacatgcacatattcacaatttttagctcaacaaactccaacttgttgtgttgccctctcatc |
5550596 |
T |
|
| Q |
112 |
tttctatagcgagaatattgtaccctgcccgaactgttcatgcgcctgccaagacaactcatttcaatcaggaagttgtatagagtaagatttcattact |
211 |
Q |
| |
|
||||| | || | ||||||||||||||||| |||||||||| |||||||| ||||||| |||||||||||| ||||||||||||||| ||| |||| |
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|
| T |
5550597 |
attctacaatgatactattgtaccctgcccgacatgttcatgcggctgccaaggcaactcacctcaatcaggaagctgtatagagtaagatatcactact |
5550696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 5540322 - 5540121
Alignment:
| Q |
12 |
taacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatc |
111 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| |||| ||||||||||||||||||||||| || |||| |||||| ||| || || | |||||||| |
|
|
| T |
5540322 |
taacattactctgatttttt-cagtgacatggaatgtgagatgcacatattcacaatttctagctccgaaaactccaacttgttgtgtcgctctctcatc |
5540224 |
T |
|
| Q |
112 |
tttctatagcgagaatattgtaccctgcccgaactgttcatgcgcctgccaagacaactcatttcaatcaggaagttgtatagagtaagatttcattact |
211 |
Q |
| |
|
||||||| || | ||||||||||||||| | |||||||||| |||||| | ||||||| ||||||||||| ||||||||||||||||||| |||| |
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|
| T |
5540223 |
attctataatgatactattgtaccctgcccaacatgttcatgcggctgccagggcaactcagctcaatcaggaacctgtatagagtaagatttcactact |
5540124 |
T |
|
| Q |
212 |
ttt |
214 |
Q |
| |
|
||| |
|
|
| T |
5540123 |
ttt |
5540121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 457 - 647
Target Start/End: Original strand, 5550967 - 5551157
Alignment:
| Q |
457 |
gcctttagttgaatgtactaggcatatgtgtccgattaaagttcactggcacattaagcataactactatgagtattggcgcgtgaagattaccgttttt |
556 |
Q |
| |
|
|||||| ||| |||||||||| ||||||||||| || |||||||||||||||||||| ||||||| | |||||||||||||| ||| |||| ||| | |
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|
| T |
5550967 |
gcctttggttcaatgtactagtcatatgtgtcctatccgagttcactggcacattaagcttaactacaaggagtattggcgcgtaaaggttactgttact |
5551066 |
T |
|
| Q |
557 |
aatttcaattacagaaagaattactcagactggatcgtggttgttcaacatccaaattttgataaattgacacaaattttcagttacaact |
647 |
Q |
| |
|
|| ||||||||||| | |||||||||||| |||| | ||||||||||||||||||| ||||| || |||| ||| ||||||||| ||||| |
|
|
| T |
5551067 |
aacttcaattacaggatgaattactcagattggaacttggttgttcaacatccaaactttgacaatctgactcaacttttcagtttcaact |
5551157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 457 - 655
Target Start/End: Complemental strand, 5539848 - 5539650
Alignment:
| Q |
457 |
gcctttagttgaatgtactaggcatatgtgtccgattaaagttcactggcacattaagcataactactatgagtattggcgcgtgaagattaccgttttt |
556 |
Q |
| |
|
|||||| ||| |||||||||| ||||||||||| || ||||||||||||||||||| | ||| || | |||||||||||||| ||| | || || | |
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|
| T |
5539848 |
gcctttggttcaatgtactagtcatatgtgtcctatccaagttcactggcacattaatcttaatgacaaggagtattggcgcgtaaaggtcactattact |
5539749 |
T |
|
| Q |
557 |
aatttcaattacagaaagaattactcagactggatcgtggttgttcaacatccaaattttgataaattgacacaaattttcagttacaactacaaatca |
655 |
Q |
| |
|
||||| |||||||| | |||||||||||| |||| | |||||||||| |||||||| ||| | || |||| ||| ||| ||||| ||||||||||||| |
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|
| T |
5539748 |
aatttaaattacaggatgaattactcagattggaacttggttgttcagcatccaaacttttacaatctgactcaactttccagtttcaactacaaatca |
5539650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 762 - 858
Target Start/End: Original strand, 5551688 - 5551785
Alignment:
| Q |
762 |
ttaacagatgatactgcaatgctttggggagttaaatttttcaatgatgtactcatgc-agctggtcctaatggtaacgtacagtcggagctactttt |
858 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| | ||||||| ||||||||| ||||||||||| |||||| ||||| || ||||||||||| |
|
|
| T |
5551688 |
ttaacagatgatacagcaatgctttggggagttaaattctacaatgatttactcatgcaagctggtcctattggtaatgtacaatcagagctactttt |
5551785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 762 - 843
Target Start/End: Complemental strand, 5539161 - 5539079
Alignment:
| Q |
762 |
ttaacagatgatactgcaatgctttggggagttaaatttttcaatgatgtactcatgc-agctggtcctaatggtaacgtaca |
843 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||||| ||| ||||||| ||||||||| ||| ||||||| |||||| ||||| |
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|
| T |
5539161 |
ttaacagatgatgcaacaatgatttggggagttaaactttacaatgatttactcatgcaagccggtcctactggtaatgtaca |
5539079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 403
Target Start/End: Complemental strand, 5539954 - 5539899
Alignment:
| Q |
348 |
gaaattaatattatacactcacatgtttccttttcatgtgtggttacagttcaagt |
403 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||||||||||||| ||||| |
|
|
| T |
5539954 |
gaaattaacattatacactcacacatttcctttttctgtgtggttacagtccaagt |
5539899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 5007817 - 5007928
Alignment:
| Q |
30 |
ttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatctttctatagcgagaatat |
129 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||| | ||||||| |||| | |||||| || ||||||||||||||||||| ||| | || |
|
|
| T |
5007817 |
ttgcagtgacatggaatgttacatgcacatattcacaatttctggctcagaaaactccgacttgctgtgtctccctctcatctttctataacgataccat |
5007916 |
T |
|
| Q |
130 |
tgtaccctgccc |
141 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5007917 |
tgtaccctgccc |
5007928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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