View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4941-Insertion-3 (Length: 533)

Name: NF4941-Insertion-3
Description: NF4941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4941-Insertion-3
NF4941-Insertion-3
[»] chr2 (1 HSPs)
chr2 (8-533)||(368366-368895)


Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 8 - 533
Target Start/End: Complemental strand, 368895 - 368366
Alignment:
Q  8 ttaaagaagttgacttcgtatctcggtaaggtagacgtctcgactac----nnnnnnnnnnnnnnnnncagaaaggaggtgtcggaatgcagtgcgacag 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                     ||||||||||||||||||||||||||||||||    
T  368895 ttaaagaagttgacttcgtatctcggtaaggtagacgtctcgactacaaaaaaaaaaaaaaaaaaaaacagaaaggaggtgtcggaatgcagtgcgacag 368796  T
Q  104 tagtattatatgaagatcatgacactgatgcgaaatgcagcagtggttacctgtatatcacgaatgagcagaagagtggctagggatcttgagtcagaat 203  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  368795 tagtattatatgaagatcatgacactgatgcgaaaagcagcagtggttacctgtatatcacgaatgagcagaagagtggctagggatcttgagtcagaat 368696  T
Q  204 gagcaacagagtcctccactgactcatctgcaagaataaggatctgtcctcttagagttagtatacagttgaagaatattttcctttacttggcttaact 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  368695 gagcaacagagtcctccactgactcatctgcaagaataaggatctgtcctcttagagttagtatacagttgaagaatattttcctttacttggcttaact 368596  T
Q  304 gtcctgaatctgaagaaattctatgacttttgaattcctacttcaacatgcactttgctcatatttatatgtcgacattattattattttgtcccatcca 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  368595 gtcctgaatctgaagaaattctatgacttttgaattcctacttcaacatgcactttgctcatatttatatgtcgacattattattattttgtcccatcca 368496  T
Q  404 acagttacgtggaggctgtcattctaatcaaacaccnnnnnnnaatgaaagtatgatatagctgataattccaaatgagatagaatagaagcataatcaa 503  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  368495 acagttacgtggaggctgtcattctaatcaaacacctttttttaatgaaagtatgatatagctgataattccaaatgagatagaatagaagcataatcaa 368396  T
Q  504 ttagaacaaaatatgttcaaactcttaaca 533  Q
    ||||||||||||||||||||||||||||||    
T  368395 ttagaacaaaatatgttcaaactcttaaca 368366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University