View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4941-Insertion-4 (Length: 517)
Name: NF4941-Insertion-4
Description: NF4941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4941-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 198 - 494
Target Start/End: Original strand, 26842872 - 26843168
Alignment:
| Q |
198 |
ttacatgtacatgtttatgtattgaatgtatcatatatacgcccttgaactactattctgaaagcacttattttatttgtagaacaatttactgtcacta |
297 |
Q |
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| T |
26842872 |
ttacatgtatatgtttatgtattgaaagtatcatatatacgcccttgaactactattctgaaagcacttattttatttgtagaacaatttactgtcacta |
26842971 |
T |
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| Q |
298 |
attgggtgcatgttcttgccaaatactcttgtatgtttctatacggcagatttggagaagcatatatatgtatgtctgaatacaagtagatcaaaatacc |
397 |
Q |
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| T |
26842972 |
attgggtgcatgttcttgccaaatactcttatttgtttctatacggcagatttgaagaagcatatatatgtatgtctgaataaaagtagatcaaaatacc |
26843071 |
T |
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| Q |
398 |
tgatctagatgttaaaaaatttgctcaagttatgttagatgagattctctacgatacatatatactttcaacttattgattttgacatgttttttgt |
494 |
Q |
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| T |
26843072 |
tgttctagatgttaaaaaatttgctcaagttatgttagatgagattctctacgatacatatatactttcaacttattgattttgacatgttttttgt |
26843168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 26842501 - 26842697
Alignment:
| Q |
10 |
aagttatcttgatatagatcctgaaagcactatccttcaaatatataccatgatctattgttttattctaaatttctaacgtgcatgcaaagaaaccgtg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
26842501 |
aagttatcttgatatagatcctgaaagcactatccttcaaatatataccatgatctattgttttattctaaatttctaacgtacatgcaaagaaacagtg |
26842600 |
T |
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| Q |
110 |
tgtacatttggcaatattttcatatagtccctaaagtgactatatagtgcaaattgaactaaatctcttatatgcatgagtggattatttacatgta |
206 |
Q |
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| T |
26842601 |
tgtacatttggcaatattttcacatagtccctaaagtgactatatagtgcaaattgaactaaatctcttatatgcatgagtggattacttacatgta |
26842697 |
T |
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