View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4941-Insertion-6 (Length: 232)
Name: NF4941-Insertion-6
Description: NF4941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4941-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 161689 - 161574
Alignment:
| Q |
8 |
taatgtttatctcacatcatatgtaatgatttattactccttctttcttcttctgaagtacatgagaaactagcattgatttactctactgatggtatgg |
107 |
Q |
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| T |
161689 |
taatggttatctctcaacatatgtaatgatttattactccttctttcttct---gaagtacatgagaaactagcattgatttactctattgatggtatgg |
161593 |
T |
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| Q |
108 |
gttttatagacaaactatc |
126 |
Q |
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||||||||||||||||||| |
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| T |
161592 |
gttttatagacaaactatc |
161574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 161549 - 161447
Alignment:
| Q |
122 |
ctatctaatgtgttgtgtggaggttggaactttgcttcatgctattcgagattgtattcatgctaatttgttgtttttatattcatgttgtctttttggg |
221 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
161549 |
ctatctaatgtgttgtgtggaggttagaactttgcttcatgccattcgagactgtattcatgctaatttgttgtttttatattgatgttgtctttttggg |
161450 |
T |
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| Q |
222 |
ttt |
224 |
Q |
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||| |
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| T |
161449 |
ttt |
161447 |
T |
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