View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4941_high_1 (Length: 721)

Name: NF4941_high_1
Description: NF4941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4941_high_1
NF4941_high_1
[»] chr3 (24 HSPs)
chr3 (13-703)||(12088711-12089397)
chr3 (298-665)||(33140278-33140645)
chr3 (314-640)||(46163837-46164162)
chr3 (413-666)||(32808267-32808524)
chr3 (314-640)||(3157679-3158004)
chr3 (298-635)||(45708469-45708807)
chr3 (403-665)||(26244858-26245119)
chr3 (308-548)||(55213977-55214217)
chr3 (414-665)||(2051586-2051835)
chr3 (403-640)||(26121976-26122213)
chr3 (298-366)||(12089289-12089357)
chr3 (298-495)||(36012582-36012780)
chr3 (416-549)||(43031238-43031374)
chr3 (298-435)||(33140505-33140643)
chr3 (570-665)||(36012686-36012782)
chr3 (298-364)||(26244860-26244926)
chr3 (571-640)||(46163844-46163914)
chr3 (298-435)||(26244163-26244301)
chr3 (597-665)||(12088989-12089057)
chr3 (327-435)||(26121982-26122091)
chr3 (594-665)||(33140276-33140347)
chr3 (298-372)||(2051759-2051833)
chr3 (298-375)||(43031128-43031205)
chr3 (570-647)||(7565750-7565828)
[»] chr7 (21 HSPs)
chr7 (323-653)||(35315869-35316199)
chr7 (298-548)||(47174-47424)
chr7 (397-665)||(33189882-33190148)
chr7 (397-553)||(7511169-7511323)
chr7 (416-664)||(25658388-25658634)
chr7 (475-665)||(32047233-32047422)
chr7 (298-640)||(26073168-26073510)
chr7 (594-665)||(36642607-36642678)
chr7 (298-375)||(25658389-25658466)
chr7 (298-640)||(26096955-26097297)
chr7 (418-505)||(527541-527628)
chr7 (308-435)||(35316071-35316199)
chr7 (565-667)||(47325-47428)
chr7 (298-375)||(7511081-7511158)
chr7 (594-665)||(7511079-7511150)
chr7 (298-388)||(32047235-32047325)
chr7 (298-366)||(36642609-36642677)
chr7 (571-665)||(26073417-26073512)
chr7 (571-665)||(26097204-26097299)
chr7 (325-388)||(32056869-32056932)
chr7 (298-372)||(21297715-21297789)
[»] chr8 (23 HSPs)
chr8 (413-665)||(41480624-41480875)
chr8 (298-534)||(5074381-5074618)
chr8 (397-528)||(18385825-18385956)
chr8 (397-665)||(42950443-42950710)
chr8 (323-640)||(38225459-38225776)
chr8 (411-528)||(11732709-11732826)
chr8 (411-661)||(42027059-42027308)
chr8 (322-526)||(23488724-23488928)
chr8 (411-534)||(42373332-42373455)
chr8 (411-482)||(16997211-16997282)
chr8 (532-665)||(5074487-5074620)
chr8 (300-388)||(42027220-42027308)
chr8 (455-638)||(34153370-34153551)
chr8 (327-388)||(38225709-38225770)
chr8 (298-388)||(23488972-23489062)
chr8 (319-388)||(34153487-34153555)
chr8 (594-665)||(16997093-16997164)
chr8 (594-640)||(23488993-23489039)
chr8 (298-388)||(41480783-41480873)
chr8 (594-640)||(7905658-7905704)
chr8 (558-638)||(23488845-23488927)
chr8 (594-640)||(38225457-38225503)
chr8 (298-375)||(11732595-11732672)
[»] chr2 (13 HSPs)
chr2 (314-665)||(26407419-26407770)
chr2 (298-642)||(36937527-36937869)
chr2 (323-549)||(29469542-29469770)
chr2 (397-528)||(29166806-29166937)
chr2 (571-639)||(29469541-29469610)
chr2 (558-640)||(26407426-26407510)
chr2 (411-490)||(25961197-25961276)
chr2 (298-388)||(26407678-26407768)
chr2 (595-640)||(36937801-36937846)
chr2 (328-388)||(18143985-18144045)
chr2 (304-375)||(25961089-25961160)
chr2 (397-435)||(29469746-29469784)
chr2 (308-366)||(36937516-36937574)
[»] chr1 (17 HSPs)
chr1 (327-534)||(27133982-27134190)
chr1 (418-638)||(34535316-34535535)
chr1 (308-549)||(49784533-49784773)
chr1 (319-629)||(33321071-33321381)
chr1 (416-551)||(23329417-23329552)
chr1 (323-534)||(4067009-4067220)
chr1 (307-388)||(27133830-27133911)
chr1 (308-375)||(34535301-34535368)
chr1 (298-372)||(2464202-2464276)
chr1 (594-638)||(2464207-2464251)
chr1 (570-642)||(23329319-23329392)
chr1 (300-477)||(38208261-38208438)
chr1 (601-653)||(38208522-38208574)
chr1 (590-653)||(49784817-49784880)
chr1 (298-388)||(2464056-2464146)
chr1 (594-640)||(4067176-4067222)
chr1 (406-435)||(33321146-33321175)
[»] chr6 (12 HSPs)
chr6 (396-665)||(67339-67607)
chr6 (298-535)||(16434806-16435043)
chr6 (416-665)||(10388218-10388466)
chr6 (413-665)||(30847624-30847875)
chr6 (298-375)||(67341-67418)
chr6 (298-435)||(30847626-30847764)
chr6 (299-371)||(3687627-3687699)
chr6 (595-665)||(16434804-16434873)
chr6 (487-549)||(30122746-30122807)
chr6 (594-662)||(3687627-3687695)
chr6 (449-495)||(30122481-30122527)
chr6 (571-640)||(30122817-30122887)
[»] chr5 (7 HSPs)
chr5 (325-638)||(36150761-36151073)
chr5 (298-534)||(13932689-13932926)
chr5 (415-548)||(20730450-20730585)
chr5 (532-664)||(13932795-13932927)
chr5 (406-547)||(8999644-8999787)
chr5 (300-375)||(20730617-20730692)
chr5 (351-388)||(22843906-22843943)
[»] chr4 (30 HSPs)
chr4 (411-640)||(4872571-4872797)
chr4 (414-665)||(51103364-51103614)
chr4 (411-548)||(34932173-34932309)
chr4 (298-642)||(22886419-22886766)
chr4 (298-642)||(22938083-22938430)
chr4 (412-581)||(45302440-45302607)
chr4 (308-656)||(35251394-35251742)
chr4 (411-607)||(43049156-43049351)
chr4 (397-653)||(4892397-4892650)
chr4 (306-551)||(54511429-54511671)
chr4 (425-553)||(40681566-40681693)
chr4 (408-550)||(42077134-42077276)
chr4 (570-665)||(39864090-39864186)
chr4 (298-388)||(39864092-39864182)
chr4 (305-375)||(33611234-33611304)
chr4 (298-375)||(51103366-51103443)
chr4 (323-435)||(4892412-4892525)
chr4 (566-665)||(51103633-51103733)
chr4 (308-375)||(40681721-40681788)
chr4 (594-640)||(35004497-35004543)
chr4 (597-665)||(22886417-22886485)
chr4 (597-665)||(22938081-22938149)
chr4 (594-634)||(42077056-42077096)
chr4 (602-665)||(4892689-4892752)
chr4 (615-665)||(5808246-5808296)
chr4 (298-372)||(35004474-35004548)
chr4 (323-388)||(35251412-35251477)
chr4 (595-640)||(35251684-35251729)
chr4 (595-640)||(40681730-40681775)
chr4 (396-437)||(42077249-42077290)
[»] scaffold0024 (2 HSPs)
scaffold0024 (307-461)||(70765-70920)
scaffold0024 (558-640)||(70822-70906)
[»] scaffold0081 (1 HSPs)
scaffold0081 (448-549)||(8565-8665)


Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 13 - 703
Target Start/End: Original strand, 12088711 - 12089397
Alignment:
Q  13 aatatcatcataattaacaatagtctcacctcatatattaacaccaccaccaccatttacgtccatataactacaccaattatgccactacaaactttta 112  Q
    |||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12088711 aatatcatcaaaattaacaatagtctcacctcatat--taacaccaccaccaccatttacgtccatataactacaccagttatgccactacaaactttta 12088808  T
Q  113 ctatatactttaagaagaaacttaacattttgccccgtcattttaattacttctaaccttaccttgtgccttaactcaccatttcctactttaaattata 212  Q
    |||||||| ||||||   |||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  12088809 ctatatacattaaga---aacttaacatttcgccccatcattttaattacttctaaccttacctagtgccttaactcaccatttcctaatttaaattata 12088905  T
Q  213 ttcatcttagctcttctcttagcaccgttaattcttcttaatgggttacattctactccttgttcatttgaatcttttactaagggtaaatcattaaatt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12088906 ttcatcttagctcttctcttagcaccgttaattcttcttaatgggttacattctactccttgttcatttgaatcttttactaagagtaaatcattaaatt 12089005  T
Q  313 agtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtc-nnnnnnnttcagagtggtccccg 411  Q
     ||| |||||||||||||||||| |||||||||||| ||||| | ||||||| | |||||||||||||| ||| ||        || ||| | |||||||    
T  12089006 ggtctatgtttttgtaccaaatttttaaattggtccctgactttattaataattcaaaatggttcatgtatttatcaaaatttttttagattagtccccg 12089105  T
Q  412 actctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgata 511  Q
    |||||||||||||||||||||||||||||||||||| | ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12089106 actctattagttgttttgtattttgagtgttaatggttaaatgtcttttggatattatttagtggttaatgtcataatgcctttagaatcttatttgata 12089205  T
Q  512 cgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctg-aaaatgtttgacaaagagagggacctttagagttattaatagagtc 610  Q
    ||||||||| |||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12089206 cgttaatgacttaaaatacaaaaacaactaatagagtcggggg-atcaatctgaaaaatgtttgacaaagagagggacctttagagttattaatagagtc 12089304  T
Q  611 aagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactccttcactaaggtatccaacaattatttttagactcctt 703  Q
    |||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12089305 aagaaccaatttaagaatttggtacaaaaacatggacaaatttaatgatttactccttcactaaggtatccaacaattatttttagactcctt 12089397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 298 - 665
Target Start/End: Original strand, 33140278 - 33140645
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnntt 397  Q
    |||||||||||| || |||||||| |||||| |||||||||||||| ||   ||||||| ||||||||| |||||| ||  ||||||||||       ||    
T  33140278 gtaaatcattaatttggtccatgtctttgtatcaaattcttaaattagtttctgactctattaataactcaaaatgatttttgtctttgtcaaacatttt 33140377  T
Q  398 -cagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgccttta 496  Q
     || | |||||  | ||| |||||||| |||||||||||||||||||||| || ||| ||||||| |||||||| |   ||||||| ||||||||||||     
T  33140378 tcaaattggtcatcaactttattagttattttgtattttgagtgttaatgtcttaatgtcttttggatattatttaaccgttaatgacataatgcctttt 33140477  T
Q  497 gaatcttatttgatacgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttag 594  Q
      |||||||||| || |||||||| ||||||||| ||||||||||| ||||||||||  | |||||||| |||||||||||||||| || |||| ||| |    
T  33140478 tgatcttatttggtatgttaatgacttaaaatac-aaaataactaaaagagtcgggg--accaatctgagaaatgtttgacaaagacagtgaccattttg 33140574  T
Q  595 agttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    |||||||||||||||||   | ||||||||| |||||||||||||| |  ||| |||||| ||||||||||    
T  33140575 agttattaatagagtcagagatcaatttgagcatttggtacaaagacaaggaccaatttagtgatttactc 33140645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 314 - 640
Target Start/End: Original strand, 46163837 - 46164162
Alignment:
Q  314 gtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt-tcagagtggtccccga 412  Q
    |||| ||| ||||||||||||||| || |||||||  |||||| ||||||||| |||||||| | ||||||||||       | ||||| || |||  ||    
T  46163837 gtccctgtctttgtaccaaattctcaatttggtccgcgactctattaataactcaaaatggtccctgtctttgtcaaatgtttctcagattgatcct-ga 46163935  T
Q  413 ctctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatac 512  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||| ||||||| |||| | |||||||||| |||    
T  46163936 ctctattaattgttttgtattttgagtgttaatggctcaatgtcttttggatattatttagtagttaatggcataatgtcttttggatcttatttggtac 46164035  T
Q  513 gttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttagagttattaatagagtc 610  Q
    |||||||  ||||||| | || | ||||||||||||| |||  | |||| ||| ||| |||||||||||| || |||| ||| |||||||||||||||||    
T  46164036 gttaatggcttaaaatgc-aatacaactaatagagtcaggg--accaatatgagaaacgtttgacaaagacagagaccattttgagttattaatagagtc 46164132  T
Q  611 aagaaccaatttgagaatttggtacaaaga 640  Q
    | | || |||||||||||||| ||||||||    
T  46164133 agggactaatttgagaatttgatacaaaga 46164162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 413 - 666
Target Start/End: Original strand, 32808267 - 32808524
Alignment:
Q  413 ctctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatac 512  Q
    ||||||||||||||||||||||||||||||||| | ||||| ||||||| |||||||| ||||||||||  ||||||| |||| | ||||||||||||||    
T  32808267 ctctattagttgttttgtattttgagtgttaatagttcaatgtcttttggatattatttagtggttaatagcataatgtcttttggatcttatttgatac 32808366  T
Q  513 gttaatgatttaaaatacaaa--aataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttagagttat--taatag 606  Q
    ||||| |  ||||||| ||||  || ||||||||||||| |||  | |||||||| ||| |||||||||||| || |||| ||| |||||||  ||||||    
T  32808367 gttaagggcttaaaatgcaaaacaacaactaatagagtcaggg--accaatctgagaaacgtttgacaaagatagagaccattttgagttatcataatag 32808464  T
Q  607 agtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactcc 666  Q
    || |||| |||||||||| | ||||||||||||| | |||| |||||  |||||||||||    
T  32808465 agccaaggaccaatttgaaattttggtacaaagacagagaccaatttggtgatttactcc 32808524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 314 - 640
Target Start/End: Original strand, 3157679 - 3158004
Alignment:
Q  314 gtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt-tcagagtggtccccga 412  Q
    |||| ||| ||||||||||||||| |  || |||||| ||||| ||||||| |||||||||||| | ||||||||       | |||||  |||||  ||    
T  3157679 gtccttgtctttgtaccaaattctcagtttcgtccataactctattaataatttaaaatggttcttttctttgtcaaatgtttctcagatcggtcct-ga 3157777  T
Q  413 ctctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatac 512  Q
    |||||||| ||||||| |||||||||||||||||| ||||| | ||||| |||||||| |||| |||||| ||||||| |||| | |||||||||| ||     
T  3157778 ctctattaattgttttttattttgagtgttaatggttcaatgttttttggatattatttagtgattaatgacataatgtcttttggatcttatttggtat 3157877  T
Q  513 gttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctg-aaaatgtttgacaaagagagggacc--tttagagttattaatagagt 609  Q
    |||||||  ||| ||| | |||| ||||||||||||     ||||||||||| ||||||||||||||||| || ||||  |||| | ||||||||||| |    
T  3157878 gttaatggcttataatgc-aaaacaactaatagagt---tagaatcaatctgaaaaatgtttgacaaagacagagaccattttaaatttattaatagaat 3157973  T
Q  610 caagaaccaatttgagaatttggtacaaaga 640  Q
    || | |  |||||||||||||| ||||||||    
T  3157974 catggattaatttgagaatttgatacaaaga 3158004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 298 - 635
Target Start/End: Complemental strand, 45708807 - 45708469
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt- 396  Q
    ||||||||||||||| |||||||| ||||||| ||| | |||||||||||  ||||| ||||||||||| |||||||    ||||||||||             
T  45708807 gtaaatcattaaattggtccatgtctttgtactaaaattttaaattggtcactgactatgttaataactcaaaatggcctctgtctttgtcaaacgttcc 45708708  T
Q  397 tcagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgccttta 496  Q
    ||| | ||||| | ||||| ||||||||||||||||||||| |||||||| |||||| ||||||  |||||||| ||| ||||||| ||||||   |||     
T  45708707 tcaaattggtctctgactcgattagttgttttgtattttgactgttaatgactcaatgtcttttagatattatttagtcgttaatgacataatttttttt 45708608  T
Q  497 gaatcttatttgatacgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc--ttta 593  Q
    | |||||||||| |||||| |||| ||||||||| |||| ||||||||||| ||| |  | |||||||| ||| |||||||||||| | | | |  |||     
T  45708607 ggatcttatttggtacgttgatgacttaaaatac-aaaagaactaatagagacggag--accaatctgagaaacgtttgacaaagacatgaatcattttt 45708511  T
Q  594 gagttattaatagagtcaagaaccaatttgagaatttggtac 635  Q
    |||||||||||||||| |   |||||||| | ||||||||||    
T  45708510 gagttattaatagagttagagaccaatttaaaaatttggtac 45708469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 403 - 665
Target Start/End: Complemental strand, 26245119 - 26244858
Alignment:
Q  403 tggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatct 502  Q
    |||||||  |||||| || |||||| ||||||||| || ||||| |||||| |||||||||||||||| ||||||||||| |||||||  ||| | ||||    
T  26245119 tggtccctaactctaataattgtttcgtattttgaatggtaatgactcaatgtcttttgaatattatttagtggttaatgacataatgttttttggatct 26245020  T
Q  503 tatttgatacgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttagagttat 600  Q
    |||||| ||| ||| ||| ||||||||| |||| || ||||||||||   |  | |||||||| |||| ||||||||||| || |||| ||| |  ||||    
T  26245019 tatttggtacattagtgacttaaaatac-aaaacaattaatagagtcactg--accaatctgataaatatttgacaaagacagagaccattttgttttat 26244923  T
Q  601 taatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    ||||||||||| | |||||||| | ||||||||||||||| |  ||| |||||||| ||||||||    
T  26244922 taatagagtcatggaccaatttaaaaatttggtacaaagacactgaccaatttaataatttactc 26244858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 308 - 548
Target Start/End: Original strand, 55213977 - 55214217
Alignment:
Q  308 aaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt-tcagagtggt 406  Q
    |||||||||  ||| ||||||||||||| | ||||||||   ||| ||| ||||||||| ||||||||  | |||||||||       | ||| | ||||    
T  55213977 aaattagtctctgtctttgtaccaaattttcaaattggtatctgaatctattaataactcaaaatggtcaaggtctttgtcaaacgtttctcaaattggt 55214076  T
Q  407 ccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatt 506  Q
    | |||||||||||||| |||||| ||||||||||||||||  ||||| ||||||| |||||||| ||||||||||  ||||||| |||| ||||||||||    
T  55214077 ctccgactctattagtggttttgcattttgagtgttaatgattcaatgtcttttggatattatttagtggttaataacataatgtcttttgaatcttatt 55214176  T
Q  507 tgatacgttaatgatttaaaatacaaaaataactaatagagt 548  Q
    || || |||||| | || |||||| |||| ||||||||||||    
T  55214177 tggtatgttaatcacttcaaatac-aaaacaactaatagagt 55214217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 414 - 665
Target Start/End: Original strand, 2051586 - 2051835
Alignment:
Q  414 tctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatacg 513  Q
    ||||||||||||||||||||||||| |||||||| |||||  |||||  ||| |||| ||||||| ||  ||||||| |||| | |||||||||| ||||    
T  2051586 tctattagttgttttgtattttgagggttaatggttcaatgccttttagataatatttagtggttgataacataatgtcttttggatcttatttggtacg 2051685  T
Q  514 ttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctgaaaatgtttgacaaagagagggacc-tttagagttattaatagagtcaa 612  Q
    ||||||  |||||||||||||  || ||||||||| ||   || |||| ||||||||||||| ||| | ||||||  ||| |||||||||||| |||||     
T  2051686 ttaatggcttaaaatacaaaac-aattaatagagttgga--aaccaatatgaaaatgtttgataaaaacagggactattttgagttattaataaagtcat 2051782  T
Q  613 gaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    | |||||||| | |||||| |||||| |   |||| |||||| ||||||||||    
T  2051783 ggaccaatttaaaaatttgatacaaaaacggagaccaatttagtgatttactc 2051835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 403 - 640
Target Start/End: Complemental strand, 26122213 - 26121976
Alignment:
Q  403 tggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatg-cctttagaatc 501  Q
    |||||||  |||||| || |||||| |||||||||||| ||||| |||||| ||||||| |||||||| |||||||||||  | | ||   ||| | |||    
T  26122213 tggtccctaactctaataattgtttggtattttgagtggtaatgactcaatgtcttttggatattatttagtggttaatgagagagtgtttttttggatc 26122114  T
Q  502 ttatttgatacgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttagagtta 599  Q
    ||||||| ||| ||||||||||||||||| |||| |||||||||||||  ||  | |||||| | |||  ||||||||||| ||  ||| ||| | ||||    
T  26122113 ttatttggtacattaatgatttaaaatac-aaaacaactaatagagtcatgg--accaatctaagaaacatttgacaaagacagataccattttgtgtta 26122017  T
Q  600 ttaatagagtcaagaaccaatttgagaatttggtacaaaga 640  Q
    |||||||||||| | |||||||||||||||||||| |||||    
T  26122016 ttaatagagtcatggaccaatttgagaatttggtataaaga 26121976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 298 - 366
Target Start/End: Complemental strand, 12089357 - 12089289
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataact 366  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| |||||||||    
T  12089357 gtaaatcattaaatttgtccatgtttttgtaccaaattcttaaattggttcttgactctattaataact 12089289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 298 - 495
Target Start/End: Complemental strand, 36012780 - 36012582
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt- 396  Q
    |||||||| |||||| |||  ||| ||||||||||||| | |||||| ||  ||||||| ||||||||| |||||||| | ||||||| ||       |     
T  36012780 gtaaatcactaaattggtctctgtctttgtaccaaattatcaaattgatctctgactctattaataactcaaaatggtccctgtctttttcaaacgtttc 36012681  T
Q  397 tcagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgccttt 495  Q
    ||| | |||| || ||   |||||||||||||||||||||||| |||||| |||||| |||||||||||||||| |||  |||||  ||||||| ||||    
T  36012680 tcaaattggttcctgatcttattagttgttttgtattttgagtattaatgactcaatgtcttttgaatattatttagtcattaatagcataatgtcttt 36012582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 416 - 549
Target Start/End: Complemental strand, 43031374 - 43031238
Alignment:
Q  416 tattagttgttttgtattttgagtgttaat----ggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgata 511  Q
    ||||| |||||||||||||||| |||||||    || ||| |||||||   |||||||| ||||||||||  ||||||| |||| |||| ||||||||||    
T  43031374 tattaattgttttgtattttgaatgttaattaatggatcagtatctttgcgatattatttagtggttaatagcataatgtcttttgaattttatttgata 43031275  T
Q  512 cgttaatgatttaaaatacaaaaataactaatagagtc 549  Q
    | ||||||| ||||||| | |||| |||||||||||||    
T  43031274 ctttaatgacttaaaatgc-aaaacaactaatagagtc 43031238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 298 - 435
Target Start/End: Complemental strand, 33140643 - 33140505
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt- 396  Q
    |||||||| |||||| |||| ||| |||||||||||| || |||||| ||  ||||||| ||||||||| ||||||||   ||||||||||       |     
T  33140643 gtaaatcactaaattggtccttgtctttgtaccaaatgctcaaattgatctctgactctattaataactcaaaatggtcactgtctttgtcaaacatttc 33140544  T
Q  397 tcagagtggtccccgactctattagttgttttgtatttt 435  Q
    ||||| |||||||||||||| |||||| |||||||||||    
T  33140543 tcagattggtccccgactcttttagttattttgtatttt 33140505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 570 - 665
Target Start/End: Original strand, 36012686 - 36012782
Alignment:
Q  570 gtttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    |||||| ||||| ||||||| ||| ||||||||||||||||||   | |||||||| ||||||||||||||| | |||| |||||| ||||||||||    
T  36012686 gtttgaaaaagacagggaccattttgagttattaatagagtcagagatcaatttgataatttggtacaaagacagagaccaatttagtgatttactc 36012782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 298 - 364
Target Start/End: Original strand, 26244860 - 26244926
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataa 364  Q
    |||||| |||||||| |||  ||| ||||||||||||| |||||||||||||||||||| |||||||    
T  26244860 gtaaattattaaattggtcagtgtctttgtaccaaatttttaaattggtccatgactctattaataa 26244926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 571 - 640
Target Start/End: Complemental strand, 46163914 - 46163844
Alignment:
Q  571 tttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaatttgagaatttggtacaaaga 640  Q
    ||||||||||| ||||||| ||| |||||||||||||||||  | ||||| ||||||||||||||||||||    
T  46163914 tttgacaaagacagggaccattttgagttattaatagagtcgcggaccaaattgagaatttggtacaaaga 46163844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 298 - 435
Target Start/End: Original strand, 26244163 - 26244301
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt- 396  Q
    |||||| |||||||| ||   ||| |||||| |||||| |||||||| ||||||||||| ||||||||  ||||||||   ||||||||||       |     
T  26244163 gtaaattattaaattggttactgtctttgtaacaaatttttaaattgatccatgactctattaataacacaaaatggtctctgtctttgtccaatgtttc 26244262  T
Q  397 tcagagtggtccccgactctattagttgttttgtatttt 435  Q
    ||||| ||||||  |||||||||||||||||||||||||    
T  26244263 tcagattggtccttgactctattagttgttttgtatttt 26244301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 665
Target Start/End: Complemental strand, 12089057 - 12088989
Alignment:
Q  597 ttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    ||||||||| ||||| | |||||||| | ||||||||||||| | |||||| |||||||||||||||||    
T  12089057 ttattaataaagtcagggaccaatttaaaaatttggtacaaaaacatagaccaatttaatgatttactc 12088989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 435
Target Start/End: Original strand, 26121982 - 26122091
Alignment:
Q  327 taccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt-tcagagtggtccccgactctattagttgt 425  Q
    ||||||||||| |||||||||||||||||| ||||||||  ||||||||   ||||||||||       | | ||| ||||||  |||||||||||||||    
T  26121982 taccaaattctcaaattggtccatgactctattaataacacaaaatggtatctgtctttgtcaaatgtttcttagattggtccatgactctattagttgt 26122081  T
Q  426 tttgtatttt 435  Q
    ||||||||||    
T  26122082 tttgtatttt 26122091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 594 - 665
Target Start/End: Complemental strand, 33140347 - 33140276
Alignment:
Q  594 gagttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    ||||||||||||||||||  ||| ||||| |||||||| |||||||| || ||| || ||||||||||||||    
T  33140347 gagttattaatagagtcagaaactaatttaagaatttgatacaaagacatggaccaaattaatgatttactc 33140276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 372
Target Start/End: Complemental strand, 2051833 - 2051759
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaat 372  Q
    |||||||| |||||| |||   ||||||||| |||||| |||||||||||||||||| | ||||||||| |||||    
T  2051833 gtaaatcactaaattggtctccgtttttgtatcaaatttttaaattggtccatgactttattaataactcaaaat 2051759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 43031128 - 43031205
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggt 375  Q
    ||||||| |||||||  ||||||  |||||| |||||| |||||||||||   |||||| ||||||||||||||||||    
T  43031128 gtaaatcgttaaattgatccatgactttgtatcaaatttttaaattggtcacggactctattaataacttaaaatggt 43031205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 570 - 647
Target Start/End: Original strand, 7565750 - 7565828
Alignment:
Q  570 gtttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagac 647  Q
    |||||||||||||| ||||| ||| |||||||||||| ||||    ||||| |||||||||||||||| ||||| ||||    
T  7565750 gtttgacaaagagatggaccattttgagttattaataaagtcgtagaccaaattgagaatttggtacagagataaagac 7565828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 323 - 653
Target Start/End: Original strand, 35315869 - 35316199
Alignment:
Q  323 tttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt-tcagagtggtccccgactctattag 421  Q
    ||||||||||||| | || | ||||| ||||||| ||||||||| ||||| ||  |||||||||||       | ||||| || |||| |||||||||||    
T  35315869 tttgtaccaaattgtcaattcggtccctgactctattaataactcaaaatagtctatgtctttgtcaaatgtttctcagattgctccctgactctattag 35315968  T
Q  422 ttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatacgttaatgat 521  Q
    |||||||||||||||||||||| || | |||| ||||||| ||||| || ||||||||||| |||||||||||| | ||||||||||||||||||||||     
T  35315969 ttgttttgtattttgagtgttattgacccaatgtcttttggatattttttagtggttaatgacataatgccttttggatcttatttgatacgttaatgac 35316068  T
Q  522 ttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaa 619  Q
    ||||||| | |||| ||||||||||||  |||  | |||||||| ||| |||||| ||||| ||||||| ||| |||||||||||||||||| | |||||    
T  35316069 ttaaaatgc-aaaacaactaatagagttaggg--accaatctgagaaacgtttgagaaagacagggaccattttgagttattaatagagtcagggaccaa 35316165  T
Q  620 tttgagaatttggtacaaagatatagacaaattt 653  Q
    ||| ||||||||||||||||| | |||| |||||    
T  35316166 tttaagaatttggtacaaagacagagactaattt 35316199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 298 - 548
Target Start/End: Complemental strand, 47424 - 47174
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnntt 397  Q
    |||||| |||||||| |||  | | ||||||||||||| |||||||||||  || |||| ||||||||| |||||| |   ||||||||||       ||    
T  47424 gtaaattattaaattggtctctatctttgtaccaaattattaaattggtctttgtctctattaataactcaaaatgatctctgtctttgtcgaacatttt 47325  T
Q  398 -cagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgccttta 496  Q
     |||| ||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||  ||||||  |||     
T  47324 tcagattggtccctgattctattagttgttttgtattttgagtgttaacggctcaatatcttttgaatattatttagtggttaatgatataatgtatttt 47225  T
Q  497 gaatcttatttgatacgttaatgatttaaaatacaaaaataactaatagagt 548  Q
    |||||||||||||||||||||||| ||||||||  |||| ||||||||||||    
T  47224 gaatcttatttgatacgttaatgacttaaaata-taaaacaactaatagagt 47174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 397 - 665
Target Start/End: Complemental strand, 33190148 - 33189882
Alignment:
Q  397 tcagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgccttta 496  Q
    ||||| ||||| | ||||||||||||||||||||||||| |||||||||| |||||| ||||||| |||||||| ||||||||||| |||||| | |||     
T  33190148 tcagattggtctctgactctattagttgttttgtattttaagtgttaatgtctcaatgtcttttggatattatttagtggttaatggcataatacatttt 33190049  T
Q  497 gaatcttatttgatacgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttag 594  Q
    | |||||||||| |||||||| |  ||||||| | |||| ||||||||||||| |||  | |||||||| |||  ||||| ||||| |   ||| ||| |    
T  33190048 g-atcttatttggtacgttaaaggcttaaaatgc-aaaacaactaatagagtcaggg--accaatctgagaaacttttgataaagacaaataccattttg 33189953  T
Q  595 agttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||| | |||| | ||| ||| |||||||    
T  33189952 agttattaatagagtcaaagaccaatttgagaagttggtacaaagacagagaccagtttgatggtttactc 33189882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 397 - 553
Target Start/End: Original strand, 7511169 - 7511323
Alignment:
Q  397 tcagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgccttta 496  Q
    ||||| |||||||  ||||||||| |||||||||||||| ||||||||| | ||||| ||||| |||||||||| ||| ||||||| |||||||| |||     
T  7511169 tcagattggtccctaactctattaattgttttgtattttaagtgttaatagttcaatgtcttt-gaatattatttagtagttaatgacataatgcttttt 7511267  T
Q  497 gaatcttatttgatacgttaatgatttaaaatacaaaaataactaatagagtcgggg 553  Q
     |||||||||| |||||||||||| ||||||||| ||||||||||||||| ||||||    
T  7511268 aaatcttattttatacgttaatgacttaaaatac-aaaataactaatagaatcgggg 7511323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 416 - 664
Target Start/End: Complemental strand, 25658634 - 25658388
Alignment:
Q  416 tattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatacgtt 515  Q
    ||||||||||||| |||||||||||||||||  ||||  |||||||| ||||||| ||||| ||||  |||||||  ||| | |||||||||| ||| ||    
T  25658634 tattagttgttttatattttgagtgttaatgattcaacgtcttttga-tattatttagtggataattgcataatgtgttttggatcttatttggtacttt 25658536  T
Q  516 aatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttagagttattaatagagtcaag 613  Q
    | ||  |||||||||||||  |||||||| ||||| ||  | |||||||| ||| |||||||||| | |  |||| ||| |||||||||| ||||||| |    
T  25658535 agtggcttaaaatacaaaac-aactaataaagtcgagg--agcaatctgataaacgtttgacaaaaacaatgaccattttgagttattaacagagtcagg 25658439  T
Q  614 aaccaatttgagaatttggtacaaagatatagacaaatttaatgatttact 664  Q
     ||||||||||||||||||||||||||||  ||| |||||| |||||||||    
T  25658438 gaccaatttgagaatttggtacaaagatagggactaatttactgatttact 25658388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 475 - 665
Target Start/End: Complemental strand, 32047422 - 32047233
Alignment:
Q  475 ggttaatgtcataatgcctttagaatcttatttgatacgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgttt 573  Q
    |||||||| |||||||||||| | | ||| |||| ||| ||||||  |||||||||||||  |||||||||||| |||| ||| ||| ||| ||| ||||    
T  32047422 ggttaatggcataatgccttttggaacttttttggtaccttaatggcttaaaatacaaaac-aactaatagagttgggg-aat-aatatgagaaaagttt 32047326  T
Q  574 gacaaagagagggacc-tttagagttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    |||||||| || |||| ||| ||||||||||||||||||   ||||||||||||||||||||||||||||  ||| |||||  ||||||||||    
T  32047325 gacaaagacagagaccattttgagttattaatagagtcagagaccaatttgagaatttggtacaaagatagggaccaatttggtgatttactc 32047233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 298 - 640
Target Start/End: Complemental strand, 26073510 - 26073168
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt- 396  Q
    ||||| ||| ||||| |||  ||| ||||||||||||| | || ||||||| ||||||| ||||||| | ||||||||   ||||||||||       |     
T  26073510 gtaaaccatcaaattggtcactgtctttgtaccaaattttcaatttggtccctgactctattaataattcaaaatggtctctgtctttgtcaaatgtttc 26073411  T
Q  397 tcagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgccttta 496  Q
    | ||| ||||| | | || ||||| ||||||||||||||||||||||  |  ||||  | ||||| |||||||| | ||||| |||  |||||||||||     
T  26073410 ttagattggtctctgcctttattaattgttttgtattttgagtgttatcgattcaacgtgttttggatattatttactggtttatggaataatgcctttt 26073311  T
Q  497 gaatcttatttgatacgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttag 594  Q
    | |||||||||| ||||||||||  ||||||| | |||| ||||||||||| | |||  | |||||||| ||| |||||||||||| || |||| ||| |    
T  26073310 ggatcttatttggtacgttaatggcttaaaatgc-aaaacaactaatagaggcaggg--accaatctgagaaacgtttgacaaagaaagtgaccattttg 26073214  T
Q  595 agttattaatagagtcaagaaccaatttgagaatttggtacaaaga 640  Q
    ||||||||||||||| |     |||||||| |||||||||||||||    
T  26073213 agttattaatagagttagaggtcaatttgaaaatttggtacaaaga 26073168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 594 - 665
Target Start/End: Complemental strand, 36642678 - 36642607
Alignment:
Q  594 gagttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||| |||| |||||||||||||||||    
T  36642678 gagttattaatagagtcagggaccaatttgaaaatttggtacaaagatagagaccaatttaatgatttactc 36642607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 25658389 - 25658466
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggt 375  Q
    |||||||| ||||||||||| | | ||||||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  25658389 gtaaatcagtaaattagtccctatctttgtaccaaattctcaaattggtccctgactctgttaataactcaaaatggt 25658466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 298 - 640
Target Start/End: Complemental strand, 26097297 - 26096955
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt- 396  Q
    ||||| ||| ||||| |||  ||| ||||||||||||| | || ||||||| ||||||| ||||||| | ||||||||   ||||||||||       |     
T  26097297 gtaaaccatcaaattggtcactgtctttgtaccaaattttcaatttggtccctgactctattaataattcaaaatggtctctgtctttgtcaaatgtttc 26097198  T
Q  397 tcagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgccttta 496  Q
    | ||| ||||| | | || ||||| ||||||||||||||||||||||  |  ||||  | ||||| |||||||| | ||||| |||  |||||||||||     
T  26097197 ttagattggtctctgcctttattaattgttttgtattttgagtgttatcgattcaacgtgttttggatattatttactggtttatggaataatgcctttt 26097098  T
Q  497 gaatcttatttgatacgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttag 594  Q
    | |||||||||| ||||||||||  ||||||| | |||| ||||||||||| | |||  | |||| ||| ||| |||||||||||| || |||| ||| |    
T  26097097 ggatcttatttggtacgttaatggcttaaaatgc-aaaacaactaatagaggcaggg--accaatttgagaaacgtttgacaaagaaagtgaccattttg 26097001  T
Q  595 agttattaatagagtcaagaaccaatttgagaatttggtacaaaga 640  Q
    ||||||||||||||| |     |||||||| |||||||||||||||    
T  26097000 agttattaatagagttagaggtcaatttgaaaatttggtacaaaga 26096955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 418 - 505
Target Start/End: Original strand, 527541 - 527628
Alignment:
Q  418 ttagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttat 505  Q
    ||||||||||||||||||||||||||||| |||||| | ||||  |||||||| ||||||||||| ||||| | |||| |||||||||    
T  527541 ttagttgttttgtattttgagtgttaatgactcaatgttttttagatattatttagtggttaatgacataacgtcttttgaatcttat 527628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 308 - 435
Target Start/End: Complemental strand, 35316199 - 35316071
Alignment:
Q  308 aaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt-tcagagtggt 406  Q
    |||||||||  ||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||| | ||||||| ||       | ||||| ||||    
T  35316199 aaattagtctctgtctttgtaccaaattcttaaattggtccctgactctattaataactcaaaatggtccctgtctttctcaaacgtttctcagattggt 35316100  T
Q  407 ccccgactctattagttgttttgtatttt 435  Q
    |||  |||||||||||||||||| |||||    
T  35316099 ccctaactctattagttgttttgcatttt 35316071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 565 - 667
Target Start/End: Original strand, 47325 - 47428
Alignment:
Q  565 aaaatgtttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttac 663  Q
    |||||||| |||||||| || || | ||| ||||||||||||||| |||  |||||||| | ||||||||||||||||| |||| |||||||| ||||||    
T  47325 aaaatgttcgacaaagacagagatcattttgagttattaatagagacaaagaccaatttaataatttggtacaaagatagagaccaatttaataatttac 47424  T
Q  664 tcct 667  Q
    ||||    
T  47425 tcct 47428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 7511081 - 7511158
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggt 375  Q
    ||||| ||| ||||| |||| | | ||||||||||||||| ||||||||| |||||||||||||||||| ||||||||    
T  7511081 gtaaaccatcaaattggtccctatctttgtaccaaattctcaaattggtcaatgactctgttaataactcaaaatggt 7511158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 594 - 665
Target Start/End: Complemental strand, 7511150 - 7511079
Alignment:
Q  594 gagttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    |||||||||| |||||||   ||||||||||||||||||||||||||||  ||| ||||| ||| |||||||    
T  7511150 gagttattaacagagtcattgaccaatttgagaatttggtacaaagatagggaccaatttgatggtttactc 7511079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 388
Target Start/End: Original strand, 32047235 - 32047325
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtc 388  Q
    ||||||||  ||||| |||| | | ||||||||||||||| |||||||||  ||||||| ||||||||| ||||||||   ||||||||||    
T  32047235 gtaaatcaccaaattggtccctatctttgtaccaaattctcaaattggtctctgactctattaataactcaaaatggtctctgtctttgtc 32047325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 366
Target Start/End: Original strand, 36642609 - 36642677
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataact 366  Q
    ||||||||||||||| |||  | | ||||||||||||| | |||||||||| ||||||| |||||||||    
T  36642609 gtaaatcattaaattggtctctatctttgtaccaaattttcaaattggtccctgactctattaataact 36642677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 665
Target Start/End: Original strand, 26073417 - 26073512
Alignment:
Q  571 tttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    ||||||||||| || |||| ||| || ||||||||||||||| | ||||| |||| ||||||||||||||| |  ||| ||||| ||| |||||||    
T  26073417 tttgacaaagacagagaccattttgaattattaatagagtcagggaccaaattgaaaatttggtacaaagacagtgaccaatttgatggtttactc 26073512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 665
Target Start/End: Original strand, 26097204 - 26097299
Alignment:
Q  571 tttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    ||||||||||| || |||| ||| || ||||||||||||||| | ||||| |||| ||||||||||||||| |  ||| ||||| ||| |||||||    
T  26097204 tttgacaaagacagagaccattttgaattattaatagagtcagggaccaaattgaaaatttggtacaaagacagtgaccaatttgatggtttactc 26097299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 388
Target Start/End: Complemental strand, 32056932 - 32056869
Alignment:
Q  325 tgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtc 388  Q
    ||||||||||||| || |||||||  |||| | |||||||||||||||||||  ||||||||||    
T  32056932 tgtaccaaattctcaatttggtcccggactttattaataacttaaaatggtttctgtctttgtc 32056869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 298 - 372
Target Start/End: Original strand, 21297715 - 21297789
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaat 372  Q
    ||||| ||| ||||| |||| ||| |||||||||||||||||| || |||  ||||||| ||||||||| |||||    
T  21297715 gtaaaccatcaaattggtccctgtctttgtaccaaattcttaatttagtctctgactctattaataactcaaaat 21297789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 3e-56; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 413 - 665
Target Start/End: Original strand, 41480624 - 41480875
Alignment:
Q  413 ctctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatac 512  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||||||  |||| |||||||||||| |||    
T  41480624 ctctattagttgttttgtattttgagtgttaatgactcaatgtcttttgaatattatttagtggttaatggcataatatctttcgaatcttatttggtac 41480723  T
Q  513 gttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctg-aaaatgtttgacaaagagagggacc-tttagagttattaatagagtc 610  Q
    |||||||| ||||||||| |||| |||||||||||||  ||  |||||| || ||||||||||||||||| ||  ||| ||| |||||||||||| ||||    
T  41480724 gttaatgacttaaaatac-aaaacaactaatagagtcaagg--atcaatatgaaaaatgtttgacaaagacagtaaccattttgagttattaataaagtc 41480820  T
Q  611 aagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    | | | |||| |||||||||||||||||||||  ||| || || |||||||||||    
T  41480821 agggaacaatatgagaatttggtacaaagatagggactaaattgatgatttactc 41480875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 298 - 534
Target Start/End: Complemental strand, 5074618 - 5074381
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnntt 397  Q
    ||||| ||| |||||  ||||| | ||||||||||||||| |||||||||| || |||| ||||||||| |||||||| | ||||||||||       ||    
T  5074618 gtaaaccatcaaattgatccatatctttgtaccaaattctcaaattggtccctgtctctattaataactcaaaatggtccctgtctttgtcaaatgtttt 5074519  T
Q  398 -cagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgccttta 496  Q
     |||| |||| || |||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||  |||||||||| |||||||||||      
T  5074518 tcagattggttcctgactctattagttgttttgtattttgagtgttaatgactcaatgtcttttggatattatttggtggttaatggcataatgccttct 5074419  T
Q  497 gaatcttatttgatacgttaatgatttaaaatacaaaa 534  Q
      ||| |||||| |||||||||| ||||||||||||||    
T  5074418 cgatcatatttggtacgttaatggtttaaaatacaaaa 5074381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 397 - 528
Target Start/End: Original strand, 18385825 - 18385956
Alignment:
Q  397 tcagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgccttta 496  Q
    ||||| |||||||| |||| |||| |||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||     
T  18385825 tcagattggtccccaactccattaattgttttgtattttaagtgttaatgactcaatatcttttgaatattatttagtggttaatgacataatgtctttt 18385924  T
Q  497 gaatcttatttgatacgttaatgatttaaaat 528  Q
    |||||||||||| ||| |||||||||||||||    
T  18385925 gaatcttatttggtacattaatgatttaaaat 18385956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 397 - 665
Target Start/End: Original strand, 42950443 - 42950710
Alignment:
Q  397 tcagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgccttta 496  Q
    ||||| |||||||  ||||| ||| |||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| ||||  ||||||| ||||     
T  42950443 tcagattggtccctaactctgttaattgttttgtattttgagtgttaatggttcaatgtcttttgaatattatttagtggctaataacataatgtctttt 42950542  T
Q  497 gaatcttatttgatacgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttag 594  Q
    | |||||||||||||||||||| | |||||||   |||| ||||||||||||| | |  |||||| ||| |||||||||||||||| |  |||| ||| |    
T  42950543 ggatcttatttgatacgttaataacttaaaat-gtaaaacaactaatagagtcagag--atcaatatgagaaatgtttgacaaagacaatgaccattttg 42950639  T
Q  595 agttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    |||||||||||||||||   ||| |||| | |||||  |||||||| |||||| ||| | ||| |||||||    
T  42950640 agttattaatagagtcagagacctatttaaaaatttaatacaaagacatagactaatctgatggtttactc 42950710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 323 - 640
Target Start/End: Original strand, 38225459 - 38225776
Alignment:
Q  323 tttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnntt-cagagtggtccccgactctattag 421  Q
    ||||||||||||||| || ||||||| | ||||| ||||||||| ||||||||    || ||||||       || |||| ||||| | |||||||||||    
T  38225459 tttgtaccaaattctcaatttggtcccttactctattaataactcaaaatggtcttggtatttgtcaaatatttttcagattggtctctgactctattag 38225558  T
Q  422 ttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatacgttaatgat 521  Q
    |||||||| ||||| ||||||||||||||||| ||||||| |||||||||||| ||||||| |||||| ||||| | ||| |||||| | ||| |||||     
T  38225559 ttgttttgcattttaagtgttaatggctcaatgtcttttggatattattcagttgttaatgacataataccttttggatcctatttggtgcgtcaatgac 38225658  T
Q  522 ttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaa 619  Q
    ||||||| | |||| || |||||||||| |||  | |||| |||  ||||||||||||||| | | ||| |||  | ||||||||||||||| | |||||    
T  38225659 ttaaaatgc-aaaacaaataatagagtcaggg--accaatatgaggaatgtttgacaaagacatgaaccattttaaattattaatagagtcagggaccaa 38225755  T
Q  620 tttgagaatttggtacaaaga 640  Q
    ||||| ||||||||| |||||    
T  38225756 tttgataatttggtataaaga 38225776  T

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Target: chr8; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 411 - 528
Target Start/End: Original strand, 11732709 - 11732826
Alignment:
Q  411 gactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgat 510  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| |||||||| ||| | |||||||||| |    
T  11732709 gactctatttgttgttttgtattttgagtgttaatgactcaatatcatttgaatattatttagtggttaatggcataatgcattttggatcttatttggt 11732808  T
Q  511 acgttaatgatttaaaat 528  Q
    |||||||||  |||||||    
T  11732809 acgttaatggcttaaaat 11732826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 411 - 661
Target Start/End: Original strand, 42027059 - 42027308
Alignment:
Q  411 gactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgat 510  Q
    |||||||||| |||||||||||||||||| |||||| |||||| ||||||| |||||||| ||||||| ||| |||||||||||| | ||||||||||||    
T  42027059 gactctattaattgttttgtattttgagttttaatgactcaatgtcttttggatattatttagtggtttatgacataatgccttttggatcttatttgat 42027158  T
Q  511 acgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttagagttattaatagag 608  Q
    || ||||||| ||||||||  |||  || ||||||||| ||||  |||||| ||| |||  ||||||||||| | | ||| |||  ||||||||||||||    
T  42027159 acattaatgacttaaaata-taaatcaattaatagagttgggg--atcaatttgagaaagatttgacaaagacaagaaccattttaagttattaatagag 42027255  T
Q  609 tcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgattt 661  Q
    |||   |||||||| ||||||| ||| ||||| |  ||| |||||| ||||||    
T  42027256 tcagagaccaatttaagaattttgtataaagacaatgactaatttagtgattt 42027308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 322 - 526
Target Start/End: Complemental strand, 23488928 - 23488724
Alignment:
Q  322 ttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt-tcagagtggtccccgactctatta 420  Q
    ||||| |||||||||| |||||||||| ||||||| | ||||| | ||||||||   ||||||||||       | ||||| ||||||  ||||||||||    
T  23488928 ttttgaaccaaattctcaaattggtccctgactctatgaataattcaaaatggtctctgtctttgtcaaatatttctcagattggtccttgactctatta 23488829  T
Q  421 gttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatacgttaatga 520  Q
    || ||||||||||||||||||||||| |||||| ||||||| |||||||| |||||||| || |||||||  |||   ||||||||||||||||||||||    
T  23488828 gt-gttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggttagtgacataatggtttttagatcttatttgatacgttaatga 23488730  T
Q  521 tttaaa 526  Q
     |||||    
T  23488729 cttaaa 23488724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 411 - 534
Target Start/End: Complemental strand, 42373455 - 42373332
Alignment:
Q  411 gactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgat 510  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||| |||| ||||||||| | ||||| |||  |||||| |||| | || |||||||||    
T  42373455 gactctattacttgtttagtattttgagtgttaatggttcaatattttttaaatattatttaatggttcatggaataatgtcttttggatgttatttgat 42373356  T
Q  511 acgttaatgatttaaaatacaaaa 534  Q
    | |||||||| |||||||||||||    
T  42373355 atgttaatgacttaaaatacaaaa 42373332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 411 - 482
Target Start/End: Original strand, 16997211 - 16997282
Alignment:
Q  411 gactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatg 482  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| |||||||||||    
T  16997211 gactctattagttgttttgtattttgagttttaatggttcaatgtcttttgaatattatttagtggttaatg 16997282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 532 - 665
Target Start/End: Original strand, 5074487 - 5074620
Alignment:
Q  532 aaaataactaatagagtcgggggaatcaatctgaaaatg-tttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaatttgagaatt 629  Q
    |||| ||||||||||||| ||  || |||||||||||   ||||||||||| ||||||| ||| ||||||||||||||| || | |||||||||||||||    
T  5074487 aaaacaactaatagagtcagg--aaccaatctgaaaaacatttgacaaagacagggaccattttgagttattaatagagacagggaccaatttgagaatt 5074584  T
Q  630 tggtacaaagatatagacaaatttaatgatttactc 665  Q
    |||||||||||||| ||  ||||| ||| |||||||    
T  5074585 tggtacaaagatatggatcaatttgatggtttactc 5074620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 300 - 388
Target Start/End: Complemental strand, 42027308 - 42027220
Alignment:
Q  300 aaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtc 388  Q
    |||||| ||||||||||  ||| ||| ||| |||||||||||||||||  ||||||| |||||||||||||||||||| ||||||||||    
T  42027308 aaatcactaaattagtcattgtctttatacaaaattcttaaattggtctctgactctattaataacttaaaatggttcttgtctttgtc 42027220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 455 - 638
Target Start/End: Original strand, 34153370 - 34153551
Alignment:
Q  455 tcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatacgttaatgatttaaaatacaaaaataactaatagagtcggggg 554  Q
    ||||||| |||||||| ||||||||||| |||||||| ||| | |||||||||||||| ||||||  ||||||| | |||| || ||||||||||    |    
T  34153370 tcttttggatattatttagtggttaatggcataatgcattttggatcttatttgatacattaatggcttaaaatgc-aaaacaattaatagagtc--aag 34153466  T
Q  555 aatcaatctga-aaatgtttgacaaagagagggacctttagagttattaatagagtcaagaaccaatttgagaatttggtacaaa 638  Q
    || |||| ||| ||| |||||||||||| |    | ||| ||||||||||||||||||   |||||||||| |||||||||||||    
T  34153467 aaccaatttgagaaacgtttgacaaagacataatcattttgagttattaatagagtcatagaccaatttgataatttggtacaaa 34153551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 327 - 388
Target Start/End: Complemental strand, 38225770 - 38225709
Alignment:
Q  327 taccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtc 388  Q
    ||||||||| | |||||||||| ||||||| ||||||| |||||||||||||||||||||||    
T  38225770 taccaaattatcaaattggtccctgactctattaataatttaaaatggttcatgtctttgtc 38225709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 298 - 388
Target Start/End: Complemental strand, 23489062 - 23488972
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtc 388  Q
    ||||||||  |||||  ||| ||| ||||||||||||||| |||||||||||||||||| | ||||||| ||||||||   ||||||||||    
T  23489062 gtaaatcaccaaattgatccttgtctttgtaccaaattctcaaattggtccatgactctatgaataactcaaaatggtcattgtctttgtc 23488972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 319 - 388
Target Start/End: Complemental strand, 34153555 - 34153487
Alignment:
Q  319 tgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtc 388  Q
    ||||||||||||||||| | ||||||||| |||||||| ||||||||| |||||| || |||||||||||    
T  34153555 tgtttttgtaccaaattatcaaattggtctatgactctattaataactcaaaatgatt-atgtctttgtc 34153487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 594 - 665
Target Start/End: Complemental strand, 16997164 - 16997093
Alignment:
Q  594 gagttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    |||||||||||||||| | ||||||| |||| |||||||||||||||||  ||| ||||| ||| |||||||    
T  16997164 gagttattaatagagttaggaaccaaattgataatttggtacaaagatagggaccaatttgatggtttactc 16997093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 594 - 640
Target Start/End: Original strand, 23488993 - 23489039
Alignment:
Q  594 gagttattaatagagtcaagaaccaatttgagaatttggtacaaaga 640  Q
    |||||||| ||||||||| | ||||||||||||||||||||||||||    
T  23488993 gagttattcatagagtcatggaccaatttgagaatttggtacaaaga 23489039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 388
Target Start/End: Complemental strand, 41480873 - 41480783
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtc 388  Q
    ||||||||| || ||||||| | | ||||||||||||||| | |||| ||| ||||| | ||||||||| |||||||||  ||||||||||    
T  41480873 gtaaatcatcaatttagtccctatctttgtaccaaattctcatattgttccctgactttattaataactcaaaatggttactgtctttgtc 41480783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 594 - 640
Target Start/End: Complemental strand, 7905704 - 7905658
Alignment:
Q  594 gagttattaatagagtcaagaaccaatttgagaatttggtacaaaga 640  Q
    |||||||||||||||||| | || ||||||| |||||||||||||||    
T  7905704 gagttattaatagagtcagggactaatttgaaaatttggtacaaaga 7905658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 638
Target Start/End: Original strand, 23488845 - 23488927
Alignment:
Q  558 caatctga-aaatgtttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaatttgagaatttggtacaaa 638  Q
    |||||||| |||| ||||||||||| || |||| ||| || ||||| ||||||||| | ||||||||||||||||||| ||||    
T  23488845 caatctgagaaatatttgacaaagacagagaccattttgaattattcatagagtcagggaccaatttgagaatttggttcaaa 23488927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 594 - 640
Target Start/End: Complemental strand, 38225503 - 38225457
Alignment:
Q  594 gagttattaatagagtcaagaaccaatttgagaatttggtacaaaga 640  Q
    |||||||||||||||| | | ||||| ||||||||||||||||||||    
T  38225503 gagttattaatagagtaagggaccaaattgagaatttggtacaaaga 38225457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 11732595 - 11732672
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggt 375  Q
    ||||| ||| |||||||| ||||| ||||||||||||| | || ||||||  ||||||| ||||||| | ||||||||    
T  11732595 gtaaaccatcaaattagtacatgtctttgtaccaaattttcaatttggtcactgactctattaataattcaaaatggt 11732672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 1e-55; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 314 - 665
Target Start/End: Original strand, 26407419 - 26407770
Alignment:
Q  314 gtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt-tcagagtggtccccga 412  Q
    |||||||| ||||||||||||| | ||||||||    |||||| ||||||||| |||||||| | ||||||||||       | ||||| ||||||  |     
T  26407419 gtccatgtctttgtaccaaattttcaaattggtttcagactctattaataactcaaaatggtccctgtctttgtcaaacttttctcagattggtccatgt 26407518  T
Q  413 ctctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatac 512  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||   |||||||||| | |||||||||| |||    
T  26407519 ctctattagttgatttgtattttgagtgttaatggttcaatatcttttgaatattatttagtggttaatggtctaatgcctttcggatcttatttggtac 26407618  T
Q  513 gttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctg-aaaatgtttgacaaagagagggacc-tttagagttattaatagagtc 610  Q
    |||||| | ||||||||| |||| |||||||||||||  ||  |||||  || |||||| |||||||||| ||||||| ||| || ||||||||||||||    
T  26407619 gttaataacttaaaatac-aaaacaactaatagagtcaagg--atcaacatgaaaaatgattgacaaagacagggaccattttgaattattaatagagtc 26407715  T
Q  611 aagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    | | |||||| ||| ||||||||||||||| |  ||| || || |||||||||||    
T  26407716 agggaccaatatgaaaatttggtacaaagacagggactaaattgatgatttactc 26407770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 298 - 642
Target Start/End: Complemental strand, 36937869 - 36937527
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt- 396  Q
    ||||| ||| ||||| || | ||| ||||||||||||||| || ||||||| ||||||| ||||||||| ||||||||   |||||||||        |     
T  36937869 gtaaaccatcaaattggttcttgtctttgtaccaaattctcaatttggtccttgactctattaataactgaaaatggtctctgtctttgtgaaatgtttc 36937770  T
Q  397 tcagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgccttta 496  Q
    ||| | || |||| |||||||||||||||||||||||||||||||||||| |||| ||||||||  |||||||| ||||||||||| ||||||||||||     
T  36937769 tcaaattgatccctgactctattagttgttttgtattttgagtgttaatgactcagtatcttttagatattatttagtggttaatgacataatgcctttt 36937670  T
Q  497 gaatcttatttgatacgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacctttaga 595  Q
    | |||||||||| |||||| |||  ||||||| | |||| |||||||||||||    | | |||||| | |||||||||||||||| |  |||| || ||    
T  36937669 ggatcttatttggtacgttgatggcttaaaatgc-aaaacaactaatagagtc--aagtaccaatctaagaaatgtttgacaaagacaaagaccatt-ga 36937574  T
Q  596 gttattaatagagtcaagaaccaatttgagaatttggtacaaagata 642  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||    
T  36937573 gttattaatagagtcagagaccaatttgagaatttggtacaaagata 36937527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 323 - 549
Target Start/End: Original strand, 29469542 - 29469770
Alignment:
Q  323 tttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt-tcagagtggtcccc--gactctatt 419  Q
    ||||||||||||||| |||||||||  ||||||| ||||||||| ||||||||   ||||||||||       | ||||| | ||||||  |||||||||    
T  29469542 tttgtaccaaattctcaaattggtcattgactctattaataactcaaaatggtcgctgtctttgtcaaatgtttctcagattagtccccctgactctatt 29469641  T
Q  420 agttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatacgttaatg 519  Q
    | ||||||||||||||||||||||||| |||||| ||||||| |||||||| ||||||||||| ||||||| ||||   |||||||||||||||||||||    
T  29469642 aattgttttgtattttgagtgttaatgactcaatgtcttttggatattatttagtggttaatgacataatgtcttttcgatcttatttgatacgttaatg 29469741  T
Q  520 atttaaaatacaaaaataactaatagagtc 549  Q
    | ||||||||| |||| |||||||||||||    
T  29469742 acttaaaatac-aaaacaactaatagagtc 29469770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 397 - 528
Target Start/End: Original strand, 29166806 - 29166937
Alignment:
Q  397 tcagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgccttta 496  Q
    ||||| ||| ||| || ||||||||||||||||||||| ||||||||||| || ||| |||||||||||||||| |||||||||||  |||||||||||     
T  29166806 tcagattgggccctgagtctattagttgttttgtatttcgagtgttaatgacttaatgtcttttgaatattatttagtggttaatggtataatgcctttt 29166905  T
Q  497 gaatcttatttgatacgttaatgatttaaaat 528  Q
    | |||||||||  ||||||||||| |||||||    
T  29166906 ggatcttatttagtacgttaatgacttaaaat 29166937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 571 - 639
Target Start/End: Complemental strand, 29469610 - 29469541
Alignment:
Q  571 tttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaatttgagaatttggtacaaag 639  Q
    ||||||||||| || |||| ||| |||||||||||||||||||  |||||||||||||||||||||||||    
T  29469610 tttgacaaagacagcgaccattttgagttattaatagagtcaatgaccaatttgagaatttggtacaaag 29469541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 558 - 640
Target Start/End: Complemental strand, 26407510 - 26407426
Alignment:
Q  558 caatctga-aaatgtttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaatttgagaatttggtacaaaga 640  Q
    |||||||| ||| |||||||||||| ||||||| ||| |||||||||||||||||   ||||||||||| |||||||||||||||    
T  26407510 caatctgagaaaagtttgacaaagacagggaccattttgagttattaatagagtctgaaaccaatttgaaaatttggtacaaaga 26407426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 411 - 490
Target Start/End: Original strand, 25961197 - 25961276
Alignment:
Q  411 gactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatg 490  Q
    |||||||||| |||||||||| | | ||||||||||||||||| | ||||  |||||||| ||||||||||| |||||||    
T  25961197 gactctattaattgttttgtactgtaagtgttaatggctcaatgttttttagatattatttagtggttaatgacataatg 25961276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 298 - 388
Target Start/End: Complemental strand, 26407768 - 26407678
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtc 388  Q
    ||||||||| || ||||||| ||| ||||||||||||| | | |||||||| ||||||| ||||||| | |||||||| | ||||||||||    
T  26407768 gtaaatcatcaatttagtccctgtctttgtaccaaattttcatattggtccctgactctattaataattcaaaatggtccctgtctttgtc 26407678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 595 - 640
Target Start/End: Original strand, 36937801 - 36937846
Alignment:
Q  595 agttattaatagagtcaagaaccaatttgagaatttggtacaaaga 640  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  36937801 agttattaatagagtcaaggaccaaattgagaatttggtacaaaga 36937846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 18144045 - 18143985
Alignment:
Q  328 accaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtc 388  Q
    |||||||| |||||||||||  ||||||| ||||||||| |||||||||||||| ||||||    
T  18144045 accaaatttttaaattggtctctgactctattaataactcaaaatggttcatgtttttgtc 18143985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 25961089 - 25961160
Alignment:
Q  304 cattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggt 375  Q
    ||||||||| |||| ||  ||||||  ||| |||||||||  ||||||||||| ||||||||||||||||||    
T  25961089 cattaaattggtccctgactttgtattaaaatcttaaatttatccatgactctattaataacttaaaatggt 25961160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 29469784 - 29469746
Alignment:
Q  397 tcagagtggtccccgactctattagttgttttgtatttt 435  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  29469784 tcagattggtccctgactctattagttgttttgtatttt 29469746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 308 - 366
Target Start/End: Original strand, 36937516 - 36937574
Alignment:
Q  308 aaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataact 366  Q
    |||||||||| | | ||||||||||||||| |||||||||  ||||||| |||||||||    
T  36937516 aaattagtccctatctttgtaccaaattctcaaattggtctctgactctattaataact 36937574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 4e-49; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 327 - 534
Target Start/End: Complemental strand, 27134190 - 27133982
Alignment:
Q  327 taccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt-tcagagtggtccccgactctattagttgt 425  Q
    ||||||||| |||||||||||  ||||||| ||||||||| |||||||||||||||||||||       | ||||| ||||| | |||||||||||||||    
T  27134190 taccaaatttttaaattggtctttgactctattaataactcaaaatggttcatgtctttgtcaaatgtttctcagattggtctctgactctattagttgt 27134091  T
Q  426 tttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatacgttaatgatttaa 525  Q
    ||||||||||||||||||||| |||||| | ||||| |||||||| ||||||||||| ||||||| |||| | |||||||||| ||||||||||| ||||    
T  27134090 tttgtattttgagtgttaatgactcaatgtattttggatattatttagtggttaatggcataatgtcttttggatcttatttggtacgttaatgacttaa 27133991  T
Q  526 aatacaaaa 534  Q
    ||| |||||    
T  27133990 aatgcaaaa 27133982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 418 - 638
Target Start/End: Complemental strand, 34535535 - 34535316
Alignment:
Q  418 ttagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatacgttaa 517  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||  || || | ||| |||||||||||| ||||||||    
T  34535535 ttagttgttttgtattttgagtgttaatggctcaatgtcttttgaatattatttagtggttaatgatatgatactttttgaatcttatttggtacgttaa 34535436  T
Q  518 tgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttagagttattaatagagtcaagaa 615  Q
    ||||||||||| | ||||||||||||| |||| |||  | |||| ||| ||| ||||||||||   || |||| |||  ||||||||||||||||||| |    
T  34535435 tgatttaaaatgc-aaaataactaatacagtcaggg--accaatttgagaaacgtttgacaaattcagtgaccattttaagttattaatagagtcaagga 34535339  T
Q  616 ccaatttgagaatttggtacaaa 638  Q
    | ||||||| |||||||||||||    
T  34535338 ctaatttgaaaatttggtacaaa 34535316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 308 - 549
Target Start/End: Original strand, 49784533 - 49784773
Alignment:
Q  308 aaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt-tcagagtggt 406  Q
    |||||||||| ||| ||||||| ||||| | || || |||| ||||||| ||||||||| ||||||||  |||||||||||       | ||||| ||||    
T  49784533 aaattagtccctgtctttgtactaaattttcaatttagtccctgactctattaataactcaaaatggt--atgtctttgtcaagtgtttctcagattggt 49784630  T
Q  407 ccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatt 506  Q
    ||| ||||| |||||||||||||||||||||||||| |||| ||||| | |||||||||||||  ||||||||||| ||||||| |||| ||||||||||    
T  49784631 ccctgactcaattagttgttttgtattttgagtgttgatggttcaatgtgttttgaatattatgtagtggttaatggcataatgtcttttgaatcttatt 49784730  T
Q  507 tgatacgttaatgatttaaaatacaaaaataactaatagagtc 549  Q
       ||||||||||| |||||||  ||||| |||||||||||||    
T  49784731 aagtacgttaatgacttaaaatgtaaaaaaaactaatagagtc 49784773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 319 - 629
Target Start/End: Complemental strand, 33321381 - 33321071
Alignment:
Q  319 tgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnntt-cagagtggtccccgactcta 417  Q
    ||||||||||||||||| ||||||||||   ||||||| ||||||||| ||||| || || |||||||||       || || | |||||   | |||||    
T  33321381 tgtttttgtaccaaatttttaaattggtttctgactctattaataactcaaaatagtccacgtctttgtcaaacttttttcaaattggtcattgtctcta 33321282  T
Q  418 ttagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatacgttaa 517  Q
    ||| ||||||||||||||||||| ||||| |||| | ||||||| |||||||| | | ||||||| ||| |||||||| |||| ||||||| ||||||||    
T  33321281 ttatttgttttgtattttgagtgataatgactcattgtcttttggatattatttaatcgttaatgacatgatgccttttgaattttatttggtacgttaa 33321182  T
Q  518 tgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagaggga-cctttagagttattaatagagtcaagaa 615  Q
    ||| ||||||||| |||| |||||||||||||||||  |||||| | | |||||||||||||||| || || | |||  | ||||||||||||||||  |    
T  33321181 tgacttaaaatac-aaaacaactaatagagtcgggg--atcaatataagaaatgtttgacaaagacagagatcattttaaattattaatagagtcaatga 33321085  T
Q  616 ccaatttgagaatt 629  Q
    ||||||||||||||    
T  33321084 ccaatttgagaatt 33321071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 416 - 551
Target Start/End: Original strand, 23329417 - 23329552
Alignment:
Q  416 tattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatacgtt 515  Q
    |||||||||||||||||||| ||||||||| | ||||| ||||| |||||||||| ||||||||||| |||||||||||| | |||||||||| ||| ||    
T  23329417 tattagttgttttgtatttttagtgttaatagttcaatgtctttagaatattatttagtggttaatgacataatgccttttggatcttatttggtacatt 23329516  T
Q  516 aatgatttaaaatacaaaaataactaatagagtcgg 551  Q
    |||||||||||||||||||  |||||||||||||||    
T  23329517 aatgatttaaaatacaaaagaaactaatagagtcgg 23329552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 323 - 534
Target Start/End: Complemental strand, 4067220 - 4067009
Alignment:
Q  323 tttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt-tcagagtggtccccgactctattag 421  Q
    ||||||||||||| |||||||||||  ||||||| ||||||||| |||||||| || |||||||||       | ||||| ||||||  |||||| |||     
T  4067220 tttgtaccaaatttttaaattggtcattgactctattaataactcaaaatggt-cacgtctttgtcaaatgtttctcagattggtccatgactctgttaa 4067122  T
Q  422 ttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatacgttaatgat 521  Q
    ||||||| |||||||||||||||||||||||| ||||||| ||||||||  || || |||| ||||||| |||| | |||||||||| |||||||||||     
T  4067121 ttgttttttattttgagtgttaatggctcaatgtcttttggatattatttcgtagtaaatgacataatgtcttttggatcttatttggtacgttaatgac 4067022  T
Q  522 ttaaaatacaaaa 534  Q
    |||||||||||||    
T  4067021 ttaaaatacaaaa 4067009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 307 - 388
Target Start/End: Original strand, 27133830 - 27133911
Alignment:
Q  307 taaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtc 388  Q
    |||||| |||| ||| |||||||||||||||||||||| ||| ||||| | ||||||||| ||||||||  |||||||||||    
T  27133830 taaattggtccctgtctttgtaccaaattcttaaattgatccctgactttattaataactcaaaatggtctatgtctttgtc 27133911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 308 - 375
Target Start/End: Original strand, 34535301 - 34535368
Alignment:
Q  308 aaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggt 375  Q
    ||||| |||| ||||||||||||||||| | ||||| |||| ||||||| ||||||||||||||||||    
T  34535301 aaattggtccctgtttttgtaccaaattttcaaattagtccttgactctattaataacttaaaatggt 34535368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 298 - 372
Target Start/End: Complemental strand, 2464276 - 2464202
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaat 372  Q
    ||||||||  ||||||||   ||| ||||||||||||||| |||||||||||||||||| ||||||||| |||||    
T  2464276 gtaaatcaccaaattagtttttgtatttgtaccaaattctcaaattggtccatgactctattaataactcaaaat 2464202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 638
Target Start/End: Original strand, 2464207 - 2464251
Alignment:
Q  594 gagttattaatagagtcaagaaccaatttgagaatttggtacaaa 638  Q
    |||||||||||||||||| | ||||||||||||||||||||||||    
T  2464207 gagttattaatagagtcatggaccaatttgagaatttggtacaaa 2464251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 570 - 642
Target Start/End: Complemental strand, 23329392 - 23329319
Alignment:
Q  570 gtttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaatttgagaatttggtacaaagata 642  Q
    |||||||||| | || |||| ||| ||| |||||||||||||| ||||||| ||||||||||| ||||||||||    
T  23329392 gtttgacaaacacagagaccatttcgaggtattaatagagtcaggaaccaaattgagaatttgatacaaagata 23329319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 300 - 477
Target Start/End: Original strand, 38208261 - 38208438
Alignment:
Q  300 aaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt-tc 398  Q
    ||||||||||||| || | ||| ||| ||| ||||| |||| ||||||  ||||||| || |||||| ||||||||| || ||||||||       | ||    
T  38208261 aaatcattaaattggttc-tgtctttatactaaatttttaatttggtctctgactctattgataactcaaaatggtttatatctttgtcaaatatttctc 38208359  T
Q  399 agagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggt 477  Q
    ||| |||||   ||| |||||| || ||||||||||||||||| |||| |||||| ||| ||| |||||||| ||||||    
T  38208360 agattggtcattgacactattaattattttgtattttgagtgtaaatgactcaatgtctcttggatattatttagtggt 38208438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 601 - 653
Target Start/End: Original strand, 38208522 - 38208574
Alignment:
Q  601 taatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaattt 653  Q
    ||||||||||| | |||||||||||||||||||||||||| | |||| |||||    
T  38208522 taatagagtcagggaccaatttgagaatttggtacaaagacagagaccaattt 38208574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 590 - 653
Target Start/End: Original strand, 49784817 - 49784880
Alignment:
Q  590 tttagagttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaattt 653  Q
    ||| |||||||||||||||||| | |||||| |||||| |||||||||||| || ||| |||||    
T  49784817 ttttgagttattaatagagtcagggaccaatatgagaacttggtacaaagacatggaccaattt 49784880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 298 - 388
Target Start/End: Original strand, 2464056 - 2464146
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtc 388  Q
    ||||| ||| ||||| |||||| | ||||||| ||||| |||| |||||||  |||||  ||||||||| ||||||  |||||||||||||    
T  2464056 gtaaaccatcaaattggtccatatctttgtactaaatttttaatttggtcccagactccattaataactcaaaatgactcatgtctttgtc 2464146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 594 - 640
Target Start/End: Original strand, 4067176 - 4067222
Alignment:
Q  594 gagttattaatagagtcaagaaccaatttgagaatttggtacaaaga 640  Q
    |||||||||||||||||||  |||||||| | |||||||||||||||    
T  4067176 gagttattaatagagtcaatgaccaatttaaaaatttggtacaaaga 4067222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 435
Target Start/End: Original strand, 33321146 - 33321175
Alignment:
Q  406 tccccgactctattagttgttttgtatttt 435  Q
    ||||||||||||||||||||||||||||||    
T  33321146 tccccgactctattagttgttttgtatttt 33321175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 3e-47; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 396 - 665
Target Start/End: Complemental strand, 67607 - 67339
Alignment:
Q  396 ttcagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgccttt 495  Q
    |||||| ||||||| ||||||||||||||||||||||||| ||||||||| | |||||  |||||| |||||||| ||||||| ||| | ||||||||||    
T  67607 ttcagattggtccctgactctattagttgttttgtattttcagtgttaattgatcaatgccttttggatattatttagtggttgatggcctaatgccttt 67508  T
Q  496 agaatcttatttgatacgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-ttta 593  Q
     |||||||||||| ||| ||||||| ||||||||| |||| || ||| |||||  | || | |||||||| |||||||||| ||| | ||||||| |||     
T  67507 tgaatcttatttggtacattaatgagttaaaatac-aaaacaattaacagagt--gagggaccaatctgagaaatgtttgataaaaacagggaccatttt 67411  T
Q  594 gagttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
     ||||||||||| ||||| | |||||||||||||||||||||||||| || ||| |||||  ||||||||||    
T  67410 aagttattaatatagtcagggaccaatttgagaatttggtacaaagacatggaccaatttggtgatttactc 67339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 298 - 535
Target Start/End: Original strand, 16434806 - 16435043
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt- 396  Q
    ||||| ||| |||||||||  | | ||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||   ||||||||||       |     
T  16434806 gtaaaccatcaaattagtctctctctttgtaccaaattctcaaattggtc-atgactctattaataactaaaaatggtatctgtctttgtcaaaaatttc 16434904  T
Q  397 tcagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgccttta 496  Q
    ||||| ||||||  |||| |||||||||||||||||||||||||||||| ||||||| | ||||| |||||||| ||||||||||   ||||||| |||     
T  16434905 tcagattggtccttgactttattagttgttttgtattttgagtgttaatagctcaatgtattttggatattatttagtggttaatagtataatgcatttt 16435004  T
Q  497 gaatcttatttgatacgttaatgatttaaaatacaaaaa 535  Q
      |||||||||| ||||||||||| |||||||| |||||    
T  16435005 agatcttatttggtacgttaatgacttaaaatataaaaa 16435043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 416 - 665
Target Start/End: Complemental strand, 10388466 - 10388218
Alignment:
Q  416 tattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatacgtt 515  Q
    |||||||||||||||||||||||| |||||| |||||| ||||||| ||||||||  |||||||||| ||||||| |||| | |||||||||  ||| ||    
T  10388466 tattagttgttttgtattttgagtattaatgactcaatgtcttttggatattattttgtggttaatggcataatgtcttttggatcttatttagtacctt 10388367  T
Q  516 aatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttagagttattaatagagtcaag 613  Q
    ||||| ||||||||| |||| | ||||||||||| | |  | |||| ||| |||  ||| ||||||| || |||| ||| ||||||||||||||||||      
T  10388366 aatgacttaaaatac-aaaacacctaatagagtcagag--accaatatgagaaacatttaacaaagacagagaccattttgagttattaatagagtcaga 10388270  T
Q  614 aaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
     |||| ||| | ||||||||| ||||| | |||  |||||||| ||||||||    
T  10388269 gaccagtttaaaaatttggtataaagacaaagatcaatttaataatttactc 10388218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 413 - 665
Target Start/End: Complemental strand, 30847875 - 30847624
Alignment:
Q  413 ctctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatac 512  Q
    |||||||||||| |||||||||| ||||||||||  ||||| | ||||| ||  |||| ||||||||||| ||||||   ||| | || ||||||| |||    
T  30847875 ctctattagttgctttgtattttaagtgttaatgattcaatgttttttggattctatttagtggttaatgacataatattttttgtattttatttggtac 30847776  T
Q  513 gttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttagagttattaatagagtc 610  Q
    |||||||| ||||||||| |||| ||||||||||||  | |  | |||||||| ||| |||||||||||| ||||||| |||  | ||||||||||| ||    
T  30847775 gttaatgacttaaaatac-aaaacaactaatagagttagag--accaatctgagaaacgtttgacaaagatagggaccattttaaattattaatagaatc 30847679  T
Q  611 aagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    |   |||||||  ||||||||||| ||||| |||||| ||||||||| |||||||    
T  30847678 atagaccaattcaagaatttggtataaagacatagaccaatttaatggtttactc 30847624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 67341 - 67418
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggt 375  Q
    ||||||||  ||||| |||||||| ||||||||||||||| |||||||||| ||||| | ||||||||||||||||||    
T  67341 gtaaatcaccaaattggtccatgtctttgtaccaaattctcaaattggtccctgactatattaataacttaaaatggt 67418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 298 - 435
Target Start/End: Original strand, 30847626 - 30847764
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt- 396  Q
    ||||| ||||||||| ||| |||| ||| |||||||||||| |||||||| |||| ||| ||||||| |||||||||| | | ||||||||       |     
T  30847626 gtaaaccattaaattggtctatgtctttataccaaattcttgaattggtctatgattctattaataatttaaaatggtccctatctttgtcaaacgtttc 30847725  T
Q  397 tcagagtggtccccgactctattagttgttttgtatttt 435  Q
    ||||| ||||| |  ||||||||||||||||||||||||    
T  30847726 tcagattggtctctaactctattagttgttttgtatttt 30847764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 3687627 - 3687699
Alignment:
Q  299 taaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaa 371  Q
    |||||||||||||| |||  ||| |||||| |||||||| |||||| ||||||||||||||||||||| ||||    
T  3687627 taaatcattaaattggtctctgtctttgtatcaaattctcaaattgatccatgactctgttaataactcaaaa 3687699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 595 - 665
Target Start/End: Complemental strand, 16434873 - 16434804
Alignment:
Q  595 agttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| | |||| ||||| ||| |||||||    
T  16434873 agttattaatagagtcatga-ccaatttgagaatttggtacaaagagagagactaatttgatggtttactc 16434804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 487 - 549
Target Start/End: Original strand, 30122746 - 30122807
Alignment:
Q  487 aatgcctttagaatcttatttgatacgttaatgatttaaaatacaaaaataactaatagagtc 549  Q
    ||||||||| |||||||||||| ||||||||||||||||||| | |||| |||||||||||||    
T  30122746 aatgccttttgaatcttatttggtacgttaatgatttaaaatgc-aaaacaactaatagagtc 30122807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 662
Target Start/End: Complemental strand, 3687695 - 3687627
Alignment:
Q  594 gagttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgattta 662  Q
    |||||||||| ||||||| | | ||||||||||||||| |||||||| | |||| ||||||||||||||    
T  3687695 gagttattaacagagtcatggatcaatttgagaatttgatacaaagacagagaccaatttaatgattta 3687627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 449 - 495
Target Start/End: Original strand, 30122481 - 30122527
Alignment:
Q  449 tcaatatcttttgaatattattcagtggttaatgtcataatgccttt 495  Q
    ||||| ||||||| |||||||| ||||||||||| ||||||||||||    
T  30122481 tcaatgtcttttgtatattatttagtggttaatgacataatgccttt 30122527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 571 - 640
Target Start/End: Original strand, 30122817 - 30122887
Alignment:
Q  571 tttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaatttgagaatttggtacaaaga 640  Q
    ||||||||||| || |||| ||| |||||||||||| ||| | | ||||||||||||||||| ||||||||    
T  30122817 tttgacaaagacagagaccattttgagttattaataaagttagggaccaatttgagaatttgatacaaaga 30122887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 2e-45; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 325 - 638
Target Start/End: Original strand, 36150761 - 36151073
Alignment:
Q  325 tgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtcttt-gtcnnnnnnnt-tcagagtggtccccgactctattagt 422  Q
    ||||| ||||||| |||||||||| | ||||| | ||||||| |||||||||||||||||| |||       | ||||| | ||| | | ||||||||||    
T  36150761 tgtactaaattctcaaattggtccctaactctatgaataactcaaaatggttcatgtcttttgtcaaatgtttctcagatttgtcactggctctattagt 36150860  T
Q  423 tgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatacgttaatgatt 522  Q
     ||||||||||| |||||||| || |||||| ||||||| |||||||| ||||||||||| |||||||| ||| | |||||||||| ||| ||||||| |    
T  36150861 -gttttgtattt-gagtgttattgactcaatgtcttttggatattatttagtggttaatggcataatgctttttggatcttatttggtacattaatgact 36150958  T
Q  523 taaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaat 620  Q
    |||||||| |||| |||||| ||||||||||  |||||| ||| ||| |||||||||||| || |||| ||| |||||||| ||||||| | ||||||||    
T  36150959 taaaatac-aaaacaactaagagagtcgggg--atcaatttgagaaacgtttgacaaagacagagaccattttgagttattcatagagttaggaaccaat 36151055  T
Q  621 ttgagaatttggtacaaa 638  Q
    ||||||||||||||||||    
T  36151056 ttgagaatttggtacaaa 36151073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 298 - 534
Target Start/End: Complemental strand, 13932926 - 13932689
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt- 396  Q
    ||||| ||| ||||| |||| | ||||||||| ||||||| |||||| | |  |||||| ||||||||| ||||||||  |||||||||||       |     
T  13932926 gtaaaccatcaaattggtccctatttttgtactaaattctcaaattgattctcgactctattaataactcaaaatggtcaatgtctttgtcaaacgtttc 13932827  T
Q  397 tcagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgccttta 496  Q
    ||||| || ||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||   |||     
T  13932826 tcagattgatccacgactctattagttattttgtattttgagtgttaatggctcaatatctttttaatactatttagtggttaatgacataatatatttt 13932727  T
Q  497 gaatcttatttgatacgttaatgatttaaaatacaaaa 534  Q
    |||||||||||| |||| |||||| |||||||||||||    
T  13932726 gaatcttatttggtacgataatgacttaaaatacaaaa 13932689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 415 - 548
Target Start/End: Original strand, 20730450 - 20730585
Alignment:
Q  415 ctattagttgttttgtattttgagtgttaatggctcaatatctt---ttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgata 511  Q
    |||||| |||||||||||||||||||| ||||| ||||| ||||   ||| |||||||| ||||||||||| |||||||| ||  | ||||||||| |||    
T  20730450 ctattaattgttttgtattttgagtgtcaatggttcaatgtcttcttttggatattatttagtggttaatgacataatgcattatggatcttatttaata 20730549  T
Q  512 cgttaatgatttaaaatacaaaaataactaatagagt 548  Q
    ||||||||  ||||||||| |||| ||||||||||||    
T  20730550 cgttaatggcttaaaatac-aaaacaactaatagagt 20730585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 532 - 664
Target Start/End: Original strand, 13932795 - 13932927
Alignment:
Q  532 aaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaatttgagaatt 629  Q
    ||||||||||||||||||| ||  |||||||||| ||| |||||||||||| |  |||| ||| ||||||||||||||||| |||| |||||||||||||    
T  13932795 aaaataactaatagagtcgtgg--atcaatctgagaaacgtttgacaaagacattgaccattttgagttattaatagagtcgagaatcaatttgagaatt 13932892  T
Q  630 tggtacaaagatatagacaaatttaatgatttact 664  Q
    | ||||||| |||  ||| ||||| ||| ||||||    
T  13932893 tagtacaaaaatagggaccaatttgatggtttact 13932927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 406 - 547
Target Start/End: Complemental strand, 8999787 - 8999644
Alignment:
Q  406 tccccgactctattagt---tgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatct 502  Q
    |||| ||||||||||||   |||||| ||||| ||  |||||||| ||||| ||||||| |||||||| | |||||||||| ||||| ||||| | || |    
T  8999787 tccctgactctattagttgttgttttatatttcgaacgttaatggttcaatgtcttttggatattatttaatggttaatgttataataccttttggattt 8999688  T
Q  503 tatttgatacgttaatgatttaaaatacaaaaataactaatagag 547  Q
    |||||| |||| ||||||||| |||||| |||| |||||||||||    
T  8999687 tatttggtacggtaatgatttgaaatac-aaaacaactaatagag 8999644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 20730692 - 20730617
Alignment:
Q  300 aaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggt 375  Q
    ||||||| || || |||| ||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  20730692 aaatcatcaatttggtccctgtctttataccaaatacttaaattggtccatgactctattaataacttaaaatggt 20730617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 388
Target Start/End: Complemental strand, 22843943 - 22843906
Alignment:
Q  351 gactctgttaataacttaaaatggttcatgtctttgtc 388  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  22843943 gactctattaataacttaaaatggtccatgtctttgtc 22843906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 411 - 640
Target Start/End: Complemental strand, 4872797 - 4872571
Alignment:
Q  411 gactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgat 510  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| ||||| ||||| || |||| |||| |||||||||||  |    
T  4872797 gactctattagttgttttgtattttgggtgttaatggctcaatgtcttttgtatattatttagtggctaatggca-aatgtcttttgaatcttatttagt 4872699  T
Q  511 acgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctgaaaatgtttgacaaagagaggga-cctttagagttattaatagagt 609  Q
    |||||||||| |||| || | |||| ||||||||||||| |||  ||||||||  ||| |||||||||||| || || | ||| ||||||||||||||||    
T  4872698 acgttaatgacttaatatgc-aaaacaactaatagagtcaggg--atcaatctagaaacgtttgacaaagacagagatcattttgagttattaatagagt 4872602  T
Q  610 caagaaccaatttgagaatttggtacaaaga 640  Q
     |   | |||||| |||||||||||||||||    
T  4872601 tagagatcaatttaagaatttggtacaaaga 4872571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 414 - 665
Target Start/End: Complemental strand, 51103614 - 51103364
Alignment:
Q  414 tctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatacg 513  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| ||||||| | |  ||||||||||| |  ||||||||| ||||    
T  51103614 tctattagttgttttgtattttgagtgttaatggttcaatgtcttttggatattatttagtggttgaggatataatgccttttgggtcttatttggtacg 51103515  T
Q  514 ttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttagagttattaatagagtca 611  Q
     |||||| ||||||||| |||| |||||||||||| |  |  | ||||| || |||  ||||||||||  |  |||| ||| || |||||||||||||||    
T  51103514 ctaatgacttaaaatac-aaaagaactaatagagttgaag--accaatccgagaaacttttgacaaaggcaatgaccattttgaattattaatagagtca 51103418  T
Q  612 agaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
     | |||||||||||||||||||||||||| | |||| |||||| ||||||||||    
T  51103417 gggaccaatttgagaatttggtacaaagacagagaccaatttagtgatttactc 51103364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 411 - 548
Target Start/End: Complemental strand, 34932309 - 34932173
Alignment:
Q  411 gactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgat 510  Q
    |||||||||||||  ||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||  ||||||||||| | ||||||||||||    
T  34932309 gactctattagttactttatattttgagtgttaatggctcaatgtcttttgaatattatttagtggttaatgatataatgccttttggatcttatttgat 34932210  T
Q  511 acgttaatgatttaaaatacaaaaataactaatagagt 548  Q
    || ||||||| ||||||||| |||| ||||||||||||    
T  34932209 acattaatgagttaaaatac-aaaagaactaatagagt 34932173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 298 - 642
Target Start/End: Original strand, 22886419 - 22886766
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataa---cttaaaatggttcatgtctttgtcnnnnnn 394  Q
    ||||||||| ||||| || ||||| |||||||||||||||||||||||| | ||||| | |||||||   || ||||| || | ||||||||||          
T  22886419 gtaaatcatcaaattggttcatgtatttgtaccaaattcttaaattggttcctgactttattaataataactcaaaatagtacttgtctttgtcaaatgt 22886518  T
Q  395 nt-tcagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcct 493  Q
     | ||||| | ||| |  | |||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |||||||||||  ||||||  |    
T  22886519 ttctcagattagtctctaattctattagttgttttgtatttttagtgttcatggctcaatgtcttttgaatattatttagtggttaatgatataatgtgt 22886618  T
Q  494 ttagaatcttatttgatacgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatct-gaaaatgtttgacaaagagagggac-ctt 591  Q
    || | |||||||||| ||||||||||| ||||||||| |||| || |||||||||||  |  | ||||||  |||| |||||||||||| ||  ||  ||    
T  22886619 tttggatcttatttgttacgttaatgacttaaaatac-aaaacaagtaatagagtcgaag--accaatctaaaaaacgtttgacaaagatagaaactatt 22886715  T
Q  592 tagagttattaatagagtcaagaaccaatttgagaatttggtacaaagata 642  Q
    | || ||||||||||||||||  |||||||| | |||||| ||||||||||    
T  22886716 ttgaattattaatagagtcaaagaccaatttaaaaatttgatacaaagata 22886766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 298 - 642
Target Start/End: Original strand, 22938083 - 22938430
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataa---cttaaaatggttcatgtctttgtcnnnnnn 394  Q
    ||||||||| ||||| || ||||| |||||||||||||||||||||||| | ||||| | |||||||   || ||||| || | ||||||||||          
T  22938083 gtaaatcatcaaattggttcatgtatttgtaccaaattcttaaattggttcctgactttattaataataactcaaaatagtacttgtctttgtcaaatgt 22938182  T
Q  395 nt-tcagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcct 493  Q
     | ||||| | ||| |  | |||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |||||||||||  ||||||  |    
T  22938183 ttctcagattagtctctaattctattagttgttttgtatttttagtgttcatggctcaatgtcttttgaatattatttagtggttaatgatataatgtgt 22938282  T
Q  494 ttagaatcttatttgatacgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatct-gaaaatgtttgacaaagagagggac-ctt 591  Q
    || | |||||||||| ||||||||||| ||||||||| |||| || |||||||||||  |  | ||||||  |||| |||||||||||| ||  ||  ||    
T  22938283 tttggatcttatttgttacgttaatgacttaaaatac-aaaacaagtaatagagtcgaag--accaatctaaaaaacgtttgacaaagatagaaactatt 22938379  T
Q  592 tagagttattaatagagtcaagaaccaatttgagaatttggtacaaagata 642  Q
    | || ||||||||||||||||  |||||||| | |||||| ||||||||||    
T  22938380 ttgaattattaatagagtcaaagaccaatttaaaaatttgatacaaagata 22938430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 412 - 581
Target Start/End: Original strand, 45302440 - 45302607
Alignment:
Q  412 actctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgata 511  Q
    ||||||||||||||||||||||||||| |||||| |  || | ||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  45302440 actctattagttgttttgtattttgagcgttaatagtccagtgtcttttggatattattcagtggttaatgtcataatgcattttgaatcttatttgata 45302539  T
Q  512 cgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctg-aaaatgtttgacaaaga 581  Q
     |||||||| ||||||| | |||| ||||||||||||| |||  | |||| || |||||||||||||||||    
T  45302540 tgttaatgacttaaaatgc-aaaacaactaatagagtcaggg--accaatatgaaaaatgtttgacaaaga 45302607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 308 - 656
Target Start/End: Complemental strand, 35251742 - 35251394
Alignment:
Q  308 aaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt-tcagagtggt 406  Q
    ||||| |||| ||| ||||||||||||||| || ||||||| | ||||| ||||||||||| ||||||   ||||||| ||       | ||||| ||||    
T  35251742 aaattggtccctgtctttgtaccaaattctcaatttggtccctaactctattaataacttataatggtctttgtctttctcaaatgtttctcagattggt 35251643  T
Q  407 ccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatt 506  Q
    | | |||||||||||||||||| ||||||||||||||||  |||||| ||||||| |||||||| ||||||||||| | ||||| |||| | ||||||||    
T  35251642 ctctgactctattagttgttttttattttgagtgttaataactcaatgtcttttggatattatttagtggttaatgacgtaatgtcttttggatcttatt 35251543  T
Q  507 tgatacgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatct-gaaaatgtttgacaaagagagggacc-tttagagttattaat 604  Q
    || ||  ||||||| ||||||| | |||||||||||||| ||| | |  ||||||||  ||||| ||||||||||| |   ||| ||| |||||||||||    
T  35251542 tggtatcttaatgacttaaaatgc-aaaataactaatagcgtcagag--atcaatctaaaaaatatttgacaaagacataaaccattttgagttattaat 35251446  T
Q  605 agagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaat 656  Q
    ||| ||   ||||||||| | ||||| |||||||| ||  ||| ||||||||    
T  35251445 agaatcctaaaccaatttaaaaatttagtacaaaggtagggaccaatttaat 35251394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 411 - 607
Target Start/End: Complemental strand, 43049351 - 43049156
Alignment:
Q  411 gactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgat 510  Q
    ||||||||||||||||||||||||| | ||||||| | ||||| ||||||| |||||||| ||||||||||| ||||||||||||   ||||||||||||    
T  43049351 gactctattagttgttttgtatttttaatgttaatagttcaatgtcttttggatattatttagtggttaatgacataatgccttttagatcttatttgat 43049252  T
Q  511 acgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctg-aaaatgtttgacaaagagagggacc-tttagagttattaataga 607  Q
    || ||||||| ||||||||| |||| || ||||||||||  ||| | |||| || |||| | |||||||||| ||||||| ||| ||||||||||||||    
T  43049251 acattaatgacttaaaatac-aaaacaattaatagagtc--gggcaccaatttgaaaaaagcttgacaaagatagggaccattttgagttattaataga 43049156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 397 - 653
Target Start/End: Complemental strand, 4892650 - 4892397
Alignment:
Q  397 tcagagtggtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgccttta 496  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||| |||||||| |||| |||||| |  ||||  |||     
T  4892650 tcagattggtccacgactctattagttgttttgtattttgagtgttaatggttcactgtcttttggatattatttagtgtttaatggc--aatgtttttt 4892553  T
Q  497 gaatcttatttgatacgttaatgatttaaaatacaaaaataactaatagagtcgggggaatcaatctga-aaatgtttgacaaagagagggacc-tttag 594  Q
    | |||||||||| ||||||| ||  ||||||| | |||| ||||||||||||| |||  | |||||| | |||||||||||||||| ||  ||| ||| |    
T  4892552 ggatcttatttggtacgttagtggcttaaaatgc-aaaacaactaatagagtcaggg--accaatctaagaaatgtttgacaaagacagtaaccattttg 4892456  T
Q  595 agttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaattt 653  Q
    ||||||||||||||||    || ||||| ||||||||||||||||| | |||| |||||    
T  4892455 agttattaatagagtcggagactaatttaagaatttggtacaaagacagagaccaattt 4892397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 306 - 551
Target Start/End: Complemental strand, 54511671 - 54511429
Alignment:
Q  306 ttaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnttc-agagtg 404  Q
    |||||||||||  | ||||||||||||||||||||||||||||| || ||| ||||||| | ||||||||  || |||| |||       ||  | | ||    
T  54511671 ttaaattagtcggtatttttgtaccaaattcttaaattggtccacgaatctattaataattcaaaatggtctatatcttagtcaaacgttttttaaattg 54511572  T
Q  405 gtccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatctta 504  Q
    ||||| ||||||||||| ||||||||||||||||| ||| |   ||||  ||||||| |||||||| ||| |||||||  |||||  |||| | ||||||    
T  54511571 gtccctgactctattagctgttttgtattttgagtattagt---tcaacgtcttttggatattatttagtcgttaatgatataatatcttttggatctta 54511475  T
Q  505 tttgatacgttaatgatttaaaatacaaaaataactaatagagtcgg 551  Q
    | |||||||||||||||||||||||| |||| |||||||||||||||    
T  54511474 tctgatacgttaatgatttaaaatac-aaaagaactaatagagtcgg 54511429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 425 - 553
Target Start/End: Original strand, 40681566 - 40681693
Alignment:
Q  425 ttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatacgttaatgattta 524  Q
    ||||||||||||||||||||| ||||||| |||| || |||||||| | |||| | || ||||||| |||| |||||||| ||||||| ||||||| |||    
T  40681566 ttttgtattttgagtgttaatagctcaatgtcttatggatattatttaatggtcagtgacataatgtcttttgaatcttaattgatacattaatgactta 40681665  T
Q  525 aaatacaaaaataactaatagagtcgggg 553  Q
    |||||| ||||||||||||| ||||||||    
T  40681666 aaatac-aaaataactaatacagtcgggg 40681693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 408 - 550
Target Start/End: Original strand, 42077134 - 42077276
Alignment:
Q  408 cccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttattt 507  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| |||| |||||  |||||||| |||   |||||||||    
T  42077134 cccgattctattagttgttttgtattttgagtgataatggctcaatgttttttgaatattatttagtgattaatagcataatgcattttcgatcttattt 42077233  T
Q  508 gatacgttaatga-tttaaaatacaaaaataactaatagagtcg 550  Q
      ||| ||||||| || ||||||| |||| ||||||||||||||    
T  42077234 agtacattaatgacttcaaaatac-aaaacaactaatagagtcg 42077276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 570 - 665
Target Start/End: Complemental strand, 39864186 - 39864090
Alignment:
Q  570 gtttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    |||||||||||| ||||| | ||| |||||||||||||||||  | |||||||| | ||||||||||||||| | |||| |||||||||||||||||    
T  39864186 gtttgacaaagacagggatcattttgagttattaatagagtcggggaccaatttaaaaatttggtacaaagacagagaccaatttaatgatttactc 39864090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 298 - 388
Target Start/End: Original strand, 39864092 - 39864182
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtc 388  Q
    ||||||||||||||| |||  ||| ||||||||||||| ||||||||||||  |||||| ||||||||| |||||| | | ||||||||||    
T  39864092 gtaaatcattaaattggtctctgtctttgtaccaaatttttaaattggtccccgactctattaataactcaaaatgatccctgtctttgtc 39864182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 305 - 375
Target Start/End: Complemental strand, 33611304 - 33611234
Alignment:
Q  305 attaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggt 375  Q
    |||||||| |||||| ||||||||||||||| |||| |||||| || ||||| ||| ||||||||||||||    
T  33611304 attaaattggtccatttttttgtaccaaatttttaatttggtctataactctattattaacttaaaatggt 33611234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 51103366 - 51103443
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggt 375  Q
    |||||||| |||||| |||  ||| ||||||||||||||| |||||||||| ||||||| ||||||| | ||||||||    
T  51103366 gtaaatcactaaattggtctctgtctttgtaccaaattctcaaattggtccctgactctattaataattcaaaatggt 51103443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 323 - 435
Target Start/End: Original strand, 4892412 - 4892525
Alignment:
Q  323 tttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt-tcagagtggtccccgactctattag 421  Q
    ||||||||||||||||||||| |||   |||||| ||||||||| |||||||||  ||||||||||       | | ||| ||||||| |||||||||||    
T  4892412 tttgtaccaaattcttaaattagtctccgactctattaataactcaaaatggttactgtctttgtcaaacatttcttagattggtccctgactctattag 4892511  T
Q  422 ttgttttgtatttt 435  Q
    |||||||| |||||    
T  4892512 ttgttttgcatttt 4892525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 566 - 665
Target Start/End: Original strand, 51103633 - 51103733
Alignment:
Q  566 aaatgtttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttact 664  Q
    |||||||||| ||||| || |||  ||| ||||||||||||||||||   |||||||||| |||||||||||||||||  ||| ||||| ||| ||||||    
T  51103633 aaatgtttgataaagacagagactattttgagttattaatagagtcagtgaccaatttgaaaatttggtacaaagatagggaccaatttgatggtttact 51103732  T
Q  665 c 665  Q
    |    
T  51103733 c 51103733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 308 - 375
Target Start/End: Complemental strand, 40681788 - 40681721
Alignment:
Q  308 aaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggt 375  Q
    ||||| || ||||| |||||||| |||||| |||||||||| ||| ||| ||||||||||||||||||    
T  40681788 aaattggttcatgtctttgtaccgaattctcaaattggtccctgattctattaataacttaaaatggt 40681721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 594 - 640
Target Start/End: Complemental strand, 35004543 - 35004497
Alignment:
Q  594 gagttattaatagagtcaagaaccaatttgagaatttggtacaaaga 640  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||    
T  35004543 gagttattaatagagtcagggaccaatatgagaatttggtacaaaga 35004497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 665
Target Start/End: Complemental strand, 22886485 - 22886417
Alignment:
Q  597 ttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    ||||||||| ||||| |||||||||| ||||||||||||||| | ||  || ||||| |||||||||||    
T  22886485 ttattaataaagtcaggaaccaatttaagaatttggtacaaatacatgaaccaatttgatgatttactc 22886417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 665
Target Start/End: Complemental strand, 22938149 - 22938081
Alignment:
Q  597 ttattaatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    ||||||||| ||||| |||||||||| ||||||||||||||| | ||  || ||||| |||||||||||    
T  22938149 ttattaataaagtcaggaaccaatttaagaatttggtacaaatacatgaaccaatttgatgatttactc 22938081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 594 - 634
Target Start/End: Complemental strand, 42077096 - 42077056
Alignment:
Q  594 gagttattaatagagtcaagaaccaatttgagaatttggta 634  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  42077096 gagttattaataaagtcaaggaccaatttgagaatttggta 42077056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 665
Target Start/End: Original strand, 4892689 - 4892752
Alignment:
Q  602 aatagagtcaagaaccaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    |||||||||  | ||||| |||||||||||||||||||||| | |||||||| ||| |||||||    
T  4892689 aatagagtctgggaccaaattgagaatttggtacaaagatagaaacaaatttgatggtttactc 4892752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 665
Target Start/End: Original strand, 5808246 - 5808296
Alignment:
Q  615 accaatttgagaatttggtacaaagatatagacaaatttaatgatttactc 665  Q
    ||||||||||||||||||||||||||||  ||| |||||| | ||||||||    
T  5808246 accaatttgagaatttggtacaaagatagggaccaatttagtaatttactc 5808296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 298 - 372
Target Start/End: Original strand, 35004474 - 35004548
Alignment:
Q  298 gtaaatcattaaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaat 372  Q
    ||||||||  || ||| ||| ||| ||||||||||||||| | |||||||| ||||||| ||||||||| |||||    
T  35004474 gtaaatcaccaatttaatccctgtctttgtaccaaattctcatattggtccctgactctattaataactcaaaat 35004548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 388
Target Start/End: Original strand, 35251412 - 35251477
Alignment:
Q  323 tttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtc 388  Q
    ||||||| ||||| ||||||||||  | || ||| ||||||||| ||||||||| |||||||||||    
T  35251412 tttgtactaaatttttaaattggtttaggattctattaataactcaaaatggtttatgtctttgtc 35251477  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 595 - 640
Target Start/End: Original strand, 35251684 - 35251729
Alignment:
Q  595 agttattaatagagtcaagaaccaatttgagaatttggtacaaaga 640  Q
    ||||||||||||||| | | ||||| ||||||||||||||||||||    
T  35251684 agttattaatagagttagggaccaaattgagaatttggtacaaaga 35251729  T

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Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 595 - 640
Target Start/End: Original strand, 40681730 - 40681775
Alignment:
Q  595 agttattaatagagtcaagaaccaatttgagaatttggtacaaaga 640  Q
    ||||||||||||| ||| | ||||||||||||||| ||||||||||    
T  40681730 agttattaatagaatcagggaccaatttgagaattcggtacaaaga 40681775  T

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Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 437
Target Start/End: Complemental strand, 42077290 - 42077249
Alignment:
Q  396 ttcagagtggtccccgactctattagttgttttgtattttga 437  Q
    |||||| |||||  ||||||||||||||||||||||||||||    
T  42077290 ttcagattggtcatcgactctattagttgttttgtattttga 42077249  T

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Target: scaffold0024 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 307 - 461
Target Start/End: Complemental strand, 70920 - 70765
Alignment:
Q  307 taaattagtccatgtttttgtaccaaattcttaaattggtccatgactctgttaataacttaaaatggttcatgtctttgtcnnnnnnnt-tcagagtgg 405  Q
    |||||| |||| ||| ||||||| ||||||| |||||||||  ||||||| |||||| || |||||||| ||||||||||||       | ||||| |||    
T  70920 taaattggtccctgtctttgtactaaattctcaaattggtctctgactctattaatagctcaaaatggtccatgtctttgtcaaacgtttctcagattgg 70821  T
Q  406 tccccgactctattagttgttttgtattttgagtgttaatggctcaatatcttttg 461  Q
    || | |||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  70820 tctctgactctattagttgttttgtattttgagtgttaatgactcaatgtcttttg 70765  T

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Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 640
Target Start/End: Original strand, 70822 - 70906
Alignment:
Q  558 caatctga-aaatgtttgacaaagagagggacc-tttagagttattaatagagtcaagaaccaatttgagaatttggtacaaaga 640  Q
    |||||||| ||| |||||||||||| | ||||| ||| ||| ||||||||||||||   |||||||||||||||| |||||||||    
T  70822 caatctgagaaacgtttgacaaagacatggaccattttgagctattaatagagtcagagaccaatttgagaatttagtacaaaga 70906  T

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Target: scaffold0081 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 448 - 549
Target Start/End: Complemental strand, 8665 - 8565
Alignment:
Q  448 ctcaatatcttttgaatattattcagtggttaatgtcataatgcctttagaatcttatttgatacgttaatgatttaaaatacaaaaataactaatagag 547  Q
    |||||| ||||||| |||||||| ||||||||||| ||||||  |||| | || ||||||| | | ||||||||||||||||  |||| |||||||||||    
T  8665 ctcaatgtcttttggatattatttagtggttaatgacataatatcttttggatattatttggtgccttaatgatttaaaata-taaaacaactaatagag 8567  T
Q  548 tc 549  Q
    ||    
T  8566 tc 8565  T

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