View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4941_high_10 (Length: 241)
Name: NF4941_high_10
Description: NF4941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4941_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 27359196 - 27358987
Alignment:
| Q |
13 |
cagagatgttgatcaacgtgaaagagtcgacggtggtgcgtccggcggaggagacaccacgaaaggcgttatggaactccaacgtcgacttggtggttcc |
112 |
Q |
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| T |
27359196 |
cagagatgttgatcaacgtgaaagagtcgacggtggtgcgtccggcggaggagacaccacgaaaggcgttatggaactccaacgtcgacttggtggttcc |
27359097 |
T |
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| Q |
113 |
aaattttcacacaccaagcgtgtacttttacaggccaaacggcacgtccaatttcttcgatgctaagattatgaaggaagctctaagcaaggtgctggtc |
212 |
Q |
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| T |
27359096 |
aaattttcacacaccaagcgtgtacttttacaggccaaacggcacgtccaatttcttcgatgctaagattatgaaggaagctctaagcaaggtgctggtc |
27358997 |
T |
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| Q |
213 |
ccgttctatc |
222 |
Q |
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|||||||||| |
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| T |
27358996 |
ccgttctatc |
27358987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 45407908 - 45408119
Alignment:
| Q |
11 |
agcagagatgttgatcaacgtgaaagagtcgacggtggtgcgtccggcggaggagacaccacgaaaggcgttatggaactccaacgtcgacttggtggtt |
110 |
Q |
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| T |
45407908 |
agcagagatgttgatcaacgtgaaagagtcgatggtggtgcgtccggcggaggagacaccacgaaaggcgttatggaattccaacgtcgacttggtggtt |
45408007 |
T |
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| Q |
111 |
ccaaattttcacacaccaagcgtgtacttttacaggccaaacggcacgtccaatttcttcgatgctaagattatgaaggaagctctaagcaaggtgctgg |
210 |
Q |
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| T |
45408008 |
ccaaattttcacacaccaagcgtgtacttttacaggccaaacggcacgtccaatttcttcgatgctaagattatgaaggaagctctaagcaaggtgctgg |
45408107 |
T |
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| Q |
211 |
tcccgttctatc |
222 |
Q |
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| T |
45408108 |
tcctgttctatc |
45408119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 1108097 - 1108160
Alignment:
| Q |
159 |
tccaatttcttcgatgctaagattatgaaggaagctctaagcaaggtgctggtcccgttctatc |
222 |
Q |
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| T |
1108097 |
tccaatttcttcaatgccaagattatgaaggaagctctcagctaggtgcttgtcccgttctatc |
1108160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 1127564 - 1127702
Alignment:
| Q |
84 |
tggaactccaacgtcgacttggtggttccaaattttcacacaccaagcgtgtacttttacaggccaaacggcacgtccaatttcttcgatgctaagatta |
183 |
Q |
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||||| |||||||| || |||||||| || ||||| || |||||||| || |||||||| || || || || | ||||||||||| ||||| ||| || |
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| T |
1127564 |
tggaattccaacgttgatttggtggtaccgaatttccatacaccaagtgtttacttttatagacctaatggtgcttccaatttctttgatgccaaggttc |
1127663 |
T |
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| Q |
184 |
tgaaggaagctctaagcaaggtgctggtcccgttctatc |
222 |
Q |
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| T |
1127664 |
ttaaagaagctcttagcaaggtgcttgtcccgttttatc |
1127702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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