View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4941_high_14 (Length: 230)
Name: NF4941_high_14
Description: NF4941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4941_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 54968451 - 54968584
Alignment:
| Q |
9 |
agagagatgaaaatgagttgacgttctaaattattttgatattttagctgttaaagctctcaatttatatggaataagatatcttaatcttaatttttga |
108 |
Q |
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| T |
54968451 |
agagatatgaaaatgagttgacgttgtaaattattttgatattttagctgttaaagctctcaatttatatggaataagatatcttaatcttaatttttga |
54968550 |
T |
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| Q |
109 |
tgaaactgctacacattcatgatttgatatatat |
142 |
Q |
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| T |
54968551 |
tgaaattgctacacattcatgatttgatatatat |
54968584 |
T |
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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 54968627 - 54968700
Alignment:
| Q |
135 |
atatatatgtgaatataa-ataaattattaattttctcatgagtcgagtcgatgttttactctatgtggattgaaaaat |
212 |
Q |
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| T |
54968627 |
atatatatgtgaatataatataagttactaattttctcatgagt-----cgatgttttactatatgtggattgaaaaat |
54968700 |
T |
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