View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4941_low_3 (Length: 380)
Name: NF4941_low_3
Description: NF4941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4941_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 8465545 - 8465175
Alignment:
| Q |
1 |
ttcattcactcactctctgtgttcattctctctcttttttcttattccagacagacttagctagttgaagaaacaagctcaggtaactctctctttaata |
100 |
Q |
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| T |
8465545 |
ttcattcactcactctctgtgttcattctctctcttttttcttattccagacagacttagctagttgaagaaacaagctcaggtaactctctctttaata |
8465446 |
T |
|
| Q |
101 |
ttttgatttcattctctcctattttactgtaggtttaacatccagatcaaagacaactcataatagtctcttaccttaataatttgataccccaagattt |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
8465445 |
ttttgatttcattctctcctattttgctgtaggtttaacatccagatcaaagacaactcataatagtatcctaccttaataatttgataccccaagattt |
8465346 |
T |
|
| Q |
201 |
aagttaaacttctaagattttgtttcattttacttcttaatttcactcg--nnnnnnnngtaatattatggaactaaaattatcttttacccttaaattt |
298 |
Q |
| |
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||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8465345 |
aagttaaacttctaagacttcgtttcattttagttcttaatttcactcgttttttttttgtaatattatggaactaaaattatcttttaccctta----- |
8465251 |
T |
|
| Q |
299 |
aatttaatatgttaggttct--nnnnnnntaactttttatatttggcccatatgtacaatttttgctacctttgct |
372 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8465250 |
aatttaatatgttaggttctaaaaaaaaaaaactttttatatttggcccgtatgtacaatttttgctacctttgct |
8465175 |
T |
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