View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4941_low_4 (Length: 342)
Name: NF4941_low_4
Description: NF4941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4941_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 296
Target Start/End: Original strand, 12088711 - 12088989
Alignment:
| Q |
13 |
aatatcatcataattaacaatagtctcacctcatatattaacaccaccaccaccatttacgtccatataactacaccaattatgccactacaaactttta |
112 |
Q |
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| T |
12088711 |
aatatcatcaaaattaacaatagtctcacctcatat--taacaccaccaccaccatttacgtccatataactacaccagttatgccactacaaactttta |
12088808 |
T |
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| Q |
113 |
ctatatactttaagaagaaacttaacattttgccccgtcattttaattacttctaaccttaccttgtgccttaactcaccatttcctactttaaattata |
212 |
Q |
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| T |
12088809 |
ctatatacattaaga---aacttaacatttcgccccatcattttaattacttctaaccttacctagtgccttaactcaccatttcctaatttaaattata |
12088905 |
T |
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| Q |
213 |
ttcatcttagctcttctcttagcaccgttaattcttcttaatgggttacattctactccttgttcatttgaatcttttactaag |
296 |
Q |
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| T |
12088906 |
ttcatcttagctcttctcttagcaccgttaattcttcttaatgggttacattctactccttgttcatttgaatcttttactaag |
12088989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 12089364 - 12089397
Alignment:
| Q |
291 |
actaaggtatccaacaattatttttagactcctt |
324 |
Q |
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| T |
12089364 |
actaaggtatccaacaattatttttagactcctt |
12089397 |
T |
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