View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4941_low_6 (Length: 259)
Name: NF4941_low_6
Description: NF4941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4941_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 14085476 - 14085234
Alignment:
| Q |
15 |
atgaacatgctgagttagtgctaaaactaaagaaaagaaaacatgatagacatccttcaatggcttggagacattttacgaagaaaagagacgcatacgc |
114 |
Q |
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| T |
14085476 |
atgaacatgttgagttagtgctaaaactaaagaaaagaaaacatgatagacatccttcaatggcttggagacattttacgaagaaaagagacgcatacgc |
14085377 |
T |
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| Q |
115 |
cacattttgtaacttctgttttgcttcttttgcgtcaaatagttctagccatcgaactaacaacatgcttaaacatatgaatgtttgtccaaaaacatga |
214 |
Q |
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| T |
14085376 |
cgaattttgtaacttctgttttgcttcttttgcgtcaaatagttctagccatcaaactaacaacatgcttaaacatatgaatgtttgtccaaaaacatga |
14085277 |
T |
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| Q |
215 |
aggtaattcttttactcttttaggttaatattggtttagcatt |
257 |
Q |
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| T |
14085276 |
aggtgattcttttactcttttagggtaatattggtttagcatt |
14085234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 12189900 - 12190106
Alignment:
| Q |
16 |
tgaacatgctgagttagtgctaaaactaaagaaaagaaaacatgatagacatccttcaatggcttggagacattttacgaagaaaagagacgcatacgcc |
115 |
Q |
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|||||||||| || ||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||| |||||||| |||| | ||| |
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| T |
12189900 |
tgaacatgctaaggtagtgctaaaactaaagaaaagaaaacctgctagacctccttcaatggtttggagacattttatgaagaaaaaagacac---tgcc |
12189996 |
T |
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| Q |
116 |
acattttgtaacttctgttttgcttcttttgcgtcaaatagttctagccatcgaactaacaacatgcttaaacatatgaatgtttgtccaaaaacatgaa |
215 |
Q |
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| T |
12189997 |
---ttttgtaactattgcttcacttcttttgtttcaaatgcttccaaccatcgaactaacaacatgcttaaacacatgatgatttgtccaaaaacatgaa |
12190093 |
T |
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| Q |
216 |
ggtaattctttta |
228 |
Q |
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|||| || ||||| |
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| T |
12190094 |
ggtagttttttta |
12190106 |
T |
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