View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4941_low_7 (Length: 258)
Name: NF4941_low_7
Description: NF4941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4941_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2869582 - 2869824
Alignment:
| Q |
1 |
tgtcaagttacttaattaccacaactactttgttatttccaaattccaacaaggaaccatt----atagtaccatgtttcctcttttcttagttgctata |
96 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2869582 |
tgtcaagttacttaattaccaccactactttgttatttccaaattccaacaaggaaccattcattatagtaccatgtttcctcttttcttagttgctata |
2869681 |
T |
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| Q |
97 |
tatattcaattctaaatcatcataatattcattcacctacccttgtcataactaagttttcaggttgcactgtgtatatatccacagaacaagtcatggg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2869682 |
tatattcaattctaaatcatcataatattcattcacctacccttgtcataactaagttttcaggttgcactgtgtatatatccacagaacaagtcatggg |
2869781 |
T |
|
| Q |
197 |
agaatcagaaggttccagcatcaacaaaactgaatcaccacag |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2869782 |
agaatcagaaggttccagcatcaacaaaactgaatcaccacag |
2869824 |
T |
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