View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4941_low_8 (Length: 249)
Name: NF4941_low_8
Description: NF4941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4941_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 14773979 - 14773760
Alignment:
| Q |
16 |
tcacaatggatattttttcactgccatttaagttgtggttggaggttagtagaagggtgcataataattatgatatggctgctagctagaacttggtggt |
115 |
Q |
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| T |
14773979 |
tcacgatggatattttttcactgccatttaagttgtggttggaggttagtagaagggtgcataataattatgatatggctgctagctagaacttggtggt |
14773880 |
T |
|
| Q |
116 |
ttcacaggttagagtggtggtagatattcaatatggcatccttattgggtctctttcattgcgatactagggagtggatttgtgatgtcgaatagtttgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14773879 |
ttcacaggttagagtggtggtagatattcaatatggcatccttattgggtctctttcattgcgatactagggagtggatttgtgatgtcgaatagtttgt |
14773780 |
T |
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| Q |
216 |
gggagtcaatatgttcattt |
235 |
Q |
| |
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|||||||||||||||||||| |
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| T |
14773779 |
gggagtcaatatgttcattt |
14773760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 15224431 - 15224212
Alignment:
| Q |
16 |
tcacaatggatattttttcactgccatttaagttgtggttggaggttagtagaagggtgcataataattatgatatggctgctagctagaacttggtggt |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15224431 |
tcacgatggatattttttcactgccatttaagttgtggttggaggttagtagaagggtgcataataattatgatatggctgctagctagaacttggtggt |
15224332 |
T |
|
| Q |
116 |
ttcacaggttagagtggtggtagatattcaatatggcatccttattgggtctctttcattgcgatactagggagtggatttgtgatgtcgaatagtttgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15224331 |
ttcacaggttagagtggtggtagatattcaatatggcatccttattgggtctctttcattgcgatactagggagtggatttgtgatgtcgaatagtttgt |
15224232 |
T |
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| Q |
216 |
gggagtcaatatgttcattt |
235 |
Q |
| |
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|||||||||||||||||||| |
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| T |
15224231 |
gggagtcaatatgttcattt |
15224212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 17555555 - 17555770
Alignment:
| Q |
16 |
tcacaatggatattttttcactgccatttaagttgtggttggaggttagtagaagggtgcataataattatgatatggctgctagctagaacttggtggt |
115 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17555555 |
tcacgatggatattttttcactggcatttaagttgtggttggaggt-attagaagggtgcataa---ttatgatatggctgctagctagaacttggtggt |
17555650 |
T |
|
| Q |
116 |
ttcacaggttagagtggtggtagatattcaatatggcatccttattgggtctctttcattgcgatactagggagtggatttgtgatgtcgaatagtttgt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17555651 |
ttcacaggttagagtggtggtagatattcaatatggcatccttatggggtctctttcattgcgatactagggagtggatttgtgatgtccaatagtttgt |
17555750 |
T |
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| Q |
216 |
gggagtcaatatgttcattt |
235 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
17555751 |
gggagtcaatatgttcattt |
17555770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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