View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4942-Insertion-1 (Length: 985)

Name: NF4942-Insertion-1
Description: NF4942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4942-Insertion-1
NF4942-Insertion-1
[»] chr2 (8 HSPs)
chr2 (7-962)||(34562715-34563659)
chr2 (443-719)||(34571777-34572053)
chr2 (750-962)||(34571509-34571713)
chr2 (620-962)||(34578977-34579314)
chr2 (620-962)||(34584726-34585063)
chr2 (276-352)||(39819075-39819151)
chr2 (9-104)||(34607487-34607584)
chr2 (276-337)||(12918545-12918606)
[»] chr8 (6 HSPs)
chr8 (634-938)||(41943686-41943986)
chr8 (633-866)||(25865441-25865676)
chr8 (291-352)||(31470771-31470832)
chr8 (637-709)||(26591913-26591985)
chr8 (639-685)||(38799242-38799288)
chr8 (639-685)||(38822229-38822275)
[»] chr6 (2 HSPs)
chr6 (276-352)||(28581802-28581877)
chr6 (291-352)||(369489-369550)
[»] chr1 (4 HSPs)
chr1 (786-866)||(7594411-7594490)
chr1 (276-352)||(10449518-10449593)
chr1 (276-352)||(9379830-9379906)
chr1 (276-352)||(9884853-9884929)
[»] chr7 (2 HSPs)
chr7 (302-350)||(25099321-25099369)
chr7 (291-352)||(17272726-17272787)
[»] chr4 (6 HSPs)
chr4 (635-695)||(24860289-24860349)
chr4 (276-341)||(32008317-32008382)
chr4 (283-352)||(53937919-53937988)
chr4 (276-352)||(31846861-31846937)
chr4 (291-352)||(6607465-6607526)
chr4 (291-352)||(32224311-32224372)
[»] scaffold0343 (1 HSPs)
scaffold0343 (291-348)||(12281-12338)
[»] chr5 (3 HSPs)
chr5 (291-352)||(42772035-42772096)
chr5 (276-349)||(1839983-1840056)
chr5 (276-337)||(29385370-29385431)
[»] chr3 (4 HSPs)
chr3 (291-352)||(22893969-22894030)
chr3 (276-333)||(29081611-29081668)
chr3 (291-352)||(31342034-31342095)
chr3 (291-352)||(11512414-11512475)


Alignment Details
Target: chr2 (Bit Score: 720; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 7 - 962
Target Start/End: Complemental strand, 34563659 - 34562715
Alignment:
Q  7 aaaatgatcataagtgtcaattgtactaataatattctcatctaacccaatttcattttattttaaataatcatctaaatttaaaatttgatgttgctaa 106  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  34563659 aaaatgatcattagtctcaattgtactaataatattctcatctaacccaattttattttagtttaaataatcatctaaatttaaaatttgatgttgctaa 34563560  T
Q  107 aataaatatatattctttaaaagaaaa-ttatggatccttttattagagactttcattgaacacttatgaaaaaa-tatcgatcctatccaattaagtga 204  Q
    |||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| |||||| | |||||||| |||| ||||||||||||| | |||    
T  34563559 aataaatatatattctttaaaaaaaaaattatggatccttctattagagactttcatagaacacatgtgaaaaaaatatcaatcctatccaattcaatga 34563460  T
Q  205 ttatctataaaacacaggtgaaagttgaaatttaagatatatgttcagaacacgataatacttgggggacatggttgatgacattagtgacatggaccaa 304  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | ||      ||||||| ||||||    
T  34563459 ttatctataaaacacatatgaaagttgaaatttaagatatatgttcagaacacgataatactttggtgacatcgtggttg------gtgacattgaccaa 34563366  T
Q  305 cctcaatgtcacaagtatctttcttctttttctctcacaatattttttatactcattttcaaattgcaccggtcatgctacaaaatggtagattcaattt 404  Q
    | |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34563365 cttcaatgtcacaagtatctttcttcattttctttcacaatattttttatactcattttcaaattgcaccggtcatgctacaaaatggtagattcaattt 34563266  T
Q  405 aaatatctaaaagaaacatatcagccaccttccttggcaatccacgctgaagcacaaaaccgttgaaacatgcaacttccacgtacactgtctctctaat 504  Q
    ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34563265 aaatatctaaaaga--catatcagccaccttccttggcaatccacgttgaagcacaaaaccgttgaaacatgcaacttccacgtacactgtctctctaat 34563168  T
Q  505 tcaaataaaaccgcctataaccatcatcattccatctctatataaatgtttcatttcattcactattctcattacaannnnnnnctttcaagacactttc 604  Q
    | |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  34563167 ttaaataaaaccgcctataaccatcatcataccatttctatataaatgtttcatttcattcactattctcattacaatttttttctttcaagacactttc 34563068  T
Q  605 aaaaccaaagcagttttcttctatctttgattcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgcc 704  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34563067 aaaaccaaagcagttttcttctatttttgattcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgcc 34562968  T
Q  705 acaaagattgctcgtaattataaaccaaagggcggacttaagagacctcgtcgttttcgtcccggaacagttgctcttcgcgagatacgtaaataccaga 804  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34562967 acaaagattgctcgtaattataaaccaaagggaggacttaagagacctcgtcgttttcgtcctggaacagttgctcttcgcgagatacgtaaataccaga 34562868  T
Q  805 agagttccgatcttttgatccgtaagcttccattccagcgtcttgttcggtgaaattgctcatgttgatctcaagccggatttcagattccaggaggcca 904  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   | ||    
T  34562867 agagttccgatcttttgatccgtaagcttccattccagcgtcttgttc-gtgaaattgctcatgttgatctcaagccggatttcagattccag--agtca 34562771  T
Q  905 tggcggttctcgcacttcaggaagcagcggaagcatatttgggtgggtttgtttgagg 962  Q
    | |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  34562770 t-gcggttctcgcacttcaggaagcagcggaagcatattt-ggttggtttgtttgagg 34562715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 443 - 719
Target Start/End: Complemental strand, 34572053 - 34571777
Alignment:
Q  443 aatccacgctgaagcacaaaaccgttgaaacatgcaacttccacgtacactgtctctctaattcaaataaaaccgcctataaccatcatcattccatctc 542  Q
    |||||||| |||| || ||||||||| || ||||||||||||||||||||  | |||| |||||||||||||| |||||||||| |||||||||||   |    
T  34572053 aatccacgttgaaacataaaaccgttaaagcatgcaacttccacgtacacgatatctcaaattcaaataaaactgcctataaccgtcatcattccactcc 34571954  T
Q  543 tatataaatgtttcatttcattcactattctcattacaannnnnnnctttcaagacactttcaaaaccaaagcagttttcttctatctttgattcaatgg 642  Q
    ||||||||| ||||||||||||||| ||||| |||||||       |||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  34571953 tatataaatctttcatttcattcacaattcttattacaattttttcctttcaagacactttcaaaaccaaagcagttttcttctattttcgattcaatgg 34571854  T
Q  643 cgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaagattgctcgt 719  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||| ||||||||    
T  34571853 cgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaaggaaggaactcgccacaaaggttgctcgt 34571777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 750 - 962
Target Start/End: Complemental strand, 34571713 - 34571509
Alignment:
Q  750 cctcgtcgttttcgtcccggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatcttttgatccgtaagcttccattccagcgtcttg 849  Q
    |||| ||||||||||  |||||||||||||||||| ||||||||||| || ||||||||| |||| |||||||||||||| |||||||||||||||||||    
T  34571713 cctcatcgttttcgttgcggaacagttgctcttcgtgagatacgtaagtatcagaagagtaccgaacttttgatccgtaaacttccattccagcgtcttg 34571614  T
Q  850 ttcggtgaaattgctcatgttgatctcaagccggatttcagattccaggaggccatggcggttctcgcacttcaggaagcagcggaagcatatttgggtg 949  Q
    ||| |||||||||||||    ||| ||||| |||||||  ||||||||   ||||| |||||||||||||||||||||||||||||||||||||| |||     
T  34571613 ttc-gtgaaattgctca---ggatttcaagacggatttacgattccag--agccat-gcggttctcgcacttcaggaagcagcggaagcatattt-ggtt 34571522  T
Q  950 ggtttgtttgagg 962  Q
    |||||||||||||    
T  34571521 ggtttgtttgagg 34571509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 620 - 962
Target Start/End: Complemental strand, 34579314 - 34578977
Alignment:
Q  620 ttcttctatctttgattcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaagattgctcgt 719  Q
    ||||||| | || |||||||||||||||||||||||||||||||||| |||||||  ||| |||||||||| ||||   ||||||||||||  ||||||     
T  34579314 ttcttcttttttcgattcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcga 34579215  T
Q  720 aattataaaccaaag---ggcggacttaagagacctcgtcgttttcgtcccggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatc 816  Q
    || | |   ||||     |||||| | ||||  |||| ||||| |||||| ||||||||||||||||| ||||||||||| || |||||| || |||| |    
T  34579214 aaatctgtgccaacaaccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaac 34579115  T
Q  817 ttttgatccgtaagcttccattccagcgtcttgttcggtgaaattgctcatgttgatctcaagccggatttcagattccaggaggccatggcggttctcg 916  Q
    ||||||| ||||| |||||||||||||||||||||| |||||||||||||     || ||||| | ||||| |||||||||   ||||| || |||||||    
T  34579114 ttttgattcgtaaacttccattccagcgtcttgttc-gtgaaattgctca---gaatttcaagacagatttgagattccag--agccat-gcagttctcg 34579022  T
Q  917 cacttcaggaagcagcggaagcatatttgggtgggtttgtttgagg 962  Q
    ||||||||||||||| |||||| ||||| ||| |||||||||||||    
T  34579021 cacttcaggaagcagtggaagcttattt-ggttggtttgtttgagg 34578977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 620 - 962
Target Start/End: Complemental strand, 34585063 - 34584726
Alignment:
Q  620 ttcttctatctttgattcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaagattgctcgt 719  Q
    ||||||| | || |||||||||||||||||||||||||||||||||| |||||||  ||| |||||||||| ||||   ||||||||||||  ||||||     
T  34585063 ttcttcttttttcgattcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcga 34584964  T
Q  720 aattataaaccaaag---ggcggacttaagagacctcgtcgttttcgtcccggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatc 816  Q
    || | |   ||||     |||||| | ||||  |||| ||||| |||||| ||||||||||||||||| ||||||||||| || |||||| || |||| |    
T  34584963 aaatctgtgccaacaaccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaac 34584864  T
Q  817 ttttgatccgtaagcttccattccagcgtcttgttcggtgaaattgctcatgttgatctcaagccggatttcagattccaggaggccatggcggttctcg 916  Q
    ||||||| ||||| |||||||||||||||||||||| |||||||||||||     || ||||| | ||||| |||||||||   ||||| || |||||||    
T  34584863 ttttgattcgtaaacttccattccagcgtcttgttc-gtgaaattgctca---gaatttcaagacagatttgagattccag--agccat-gcagttctcg 34584771  T
Q  917 cacttcaggaagcagcggaagcatatttgggtgggtttgtttgagg 962  Q
    ||||||||||||||| |||||| ||||| ||| |||||||||||||    
T  34584770 cacttcaggaagcagtggaagcttattt-ggttggtttgtttgagg 34584726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 39819075 - 39819151
Alignment:
Q  276 tggttgatgacattagtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 352  Q
    |||||| ||||||| ||||||| | |||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  39819075 tggttggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 39819151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 34607487 - 34607584
Alignment:
Q  9 aatgatcataagtgtcaattgtactaataatattctc---atctaacccaatttcattttattttaaataatcatctaaatttaaaatttgatgttgct 104  Q
    ||||||||| ||||||||||||| |||||||| |  |   ||||  |||||||| ||||  ||||||||||| || |||||||||||||||||||||||    
T  34607487 aatgatcattagtgtcaattgtattaataataatgacttaatctcccccaattttatttc-ttttaaataatgatataaatttaaaatttgatgttgct 34607584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 12918545 - 12918606
Alignment:
Q  276 tggttgatgacattagtgacatggaccaacctcaatgtcacaagtatctttcttctttttct 337  Q
    |||||||||||||| ||||||| | |||||| |||||||||| ||  |||| ||||||||||    
T  12918545 tggttgatgacattggtgacattggccaaccacaatgtcacatgtggcttttttctttttct 12918606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 634 - 938
Target Start/End: Original strand, 41943686 - 41943986
Alignment:
Q  634 attcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaagattgctcgtaattataaacc--- 730  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||   || ||||| |||  |||||| || | |   ||       
T  41943686 attcaatggctcgtactaagcaaactgctcgcaaatccaccggtggcaaggctccaaggaagcaactggccaccaaggctgctcgcaaatctgctcctac 41943785  T
Q  731 aaagggcggacttaagagacctcgtcgttttcgtcccggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatcttttgatccgtaag 830  Q
    ||  || ||| | |||| ||||| ||| | |||||| || || ||||| ||||| ||||| |||||||||||||||||| | ||||||||||||||||||    
T  41943786 aaccggtggagtcaagaaacctcatcgctatcgtcctggtaccgttgcacttcgtgagatccgtaaataccagaagagtactgatcttttgatccgtaag 41943885  T
Q  831 cttccattccagcgtcttgttcggtgaaattgctcatgttgatctcaagccggatttcagattccaggaggccatggcggttctcgcacttcaggaagca 930  Q
    ||||||||||| |||||||||| |||||||||||||    ||| ||||| ||||| |||||||||||   ||||| || ||||| |||||||||||||||    
T  41943886 cttccattccaacgtcttgttc-gtgaaattgctca---agatttcaagacggatctcagattccag--agccat-gctgttcttgcacttcaggaagca 41943978  T
Q  931 gcggaagc 938  Q
    || |||||    
T  41943979 gcagaagc 41943986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 633 - 866
Target Start/End: Original strand, 25865441 - 25865676
Alignment:
Q  633 gattcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaagattgctcgtaattataaaccaa 732  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| ||||   ||||| || ||   |||  | || | |   ||||    
T  25865441 gattcaatggctcgtacgaagcaaactgctcgcaaatccaccggcggcaaggcaccaaggaagcaactcgcgaccaaagctgcaaggaaatctgctccaa 25865540  T
Q  733 ag---ggcggacttaagagacctcgtcgttttcgtcccggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatcttttgatccgtaa 829  Q
         |||||| | ||||  |||| ||||| |||||| ||||| ||||||||||| ||||| ||||| || ||||||||| | || ||||||||||||||    
T  25865541 ccaccggcggagtgaagaagcctcatcgttatcgtcctggaaccgttgctcttcgtgagatccgtaagtatcagaagagtactgagcttttgatccgtaa 25865640  T
Q  830 gcttccattccagcgtcttgttcggtgaaattgctca 866  Q
    ||||||||||||||||||||||| |||||||||||||    
T  25865641 gcttccattccagcgtcttgttc-gtgaaattgctca 25865676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 31470771 - 31470832
Alignment:
Q  291 gtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 352  Q
    ||||||| |||||||| |||||||||||||||| ||||||||||||| ||||||||||||||    
T  31470771 gtgacattgaccaaccacaatgtcacaagtatcattcttctttttctttcacaatatttttt 31470832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 637 - 709
Target Start/End: Original strand, 26591913 - 26591985
Alignment:
Q  637 caatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaa 709  Q
    ||||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||||| ||||  |||||| |||||    
T  26591913 caatggcacgtactaagcaaactgcacgcaagtccaccggcggcaaagcaccaaggaagcagctcgcaacaaa 26591985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 639 - 685
Target Start/End: Original strand, 38799242 - 38799288
Alignment:
Q  639 atggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggc 685  Q
    ||||| ||||| |||||||| ||||||||||||||||| ||||||||    
T  38799242 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggc 38799288  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 639 - 685
Target Start/End: Complemental strand, 38822275 - 38822229
Alignment:
Q  639 atggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggc 685  Q
    ||||| ||||| |||||||| ||||||||||||||||| ||||||||    
T  38822275 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggc 38822229  T

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Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 352
Target Start/End: Complemental strand, 28581877 - 28581802
Alignment:
Q  276 tggttgatgacattagtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 352  Q
    |||||||||||||| |||| || ||||||| ||||| |||||||| |||||||||||| ||| ||||||||||||||    
T  28581877 tggttgatgacatt-gtgatattgaccaacatcaatatcacaagtgtctttcttctttctctttcacaatatttttt 28581802  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 369550 - 369489
Alignment:
Q  291 gtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 352  Q
    ||||||| |||||||| ||||||||||||| |||||||||||| ||| ||||| | ||||||    
T  369550 gtgacattgaccaaccacaatgtcacaagtgtctttcttctttctctttcacagtttttttt 369489  T

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Target: chr1 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 786 - 866
Target Start/End: Complemental strand, 7594490 - 7594411
Alignment:
Q  786 gagatacgtaaataccagaagagttccgatcttttgatccgtaagcttccattccagcgtcttgttcggtgaaattgctca 866  Q
    ||||| ||||| |||||||||||| | || ||||||||||| ||||||||||| |||||||||| || |||||||||||||    
T  7594490 gagatccgtaagtaccagaagagtactgagcttttgatccgcaagcttccatttcagcgtcttg-tccgtgaaattgctca 7594411  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 276 - 352
Target Start/End: Complemental strand, 10449593 - 10449518
Alignment:
Q  276 tggttgatgacattagtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 352  Q
    |||||| ||||||| ||||||| |  ||||| ||||||||||| |||||||||||||| ||| ||||||||||||||    
T  10449593 tggttggtgacatt-gtgacattggtcaaccacaatgtcacaaatatctttcttctttctctttcacaatatttttt 10449518  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 9379830 - 9379906
Alignment:
Q  276 tggttgatgacattagtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 352  Q
    |||||| ||||||| |||| || | |||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  9379830 tggttggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 9379906  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 9884853 - 9884929
Alignment:
Q  276 tggttgatgacattagtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 352  Q
    |||||| ||||||| ||||||| |  ||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  9884853 tggttggtgacattggtgacattggtcaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 9884929  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 25099369 - 25099321
Alignment:
Q  302 caacctcaatgtcacaagtatctttcttctttttctctcacaatatttt 350  Q
    ||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  25099369 caaccacaatgtcacaagtgtctttcttctttttctttcacaatatttt 25099321  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 17272726 - 17272787
Alignment:
Q  291 gtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 352  Q
    ||||||| | |||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  17272726 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 17272787  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 635 - 695
Target Start/End: Original strand, 24860289 - 24860349
Alignment:
Q  635 ttcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaag 695  Q
    ||||||||| |||||||||||||| ||||||||||||||||| || || ||||||| ||||    
T  24860289 ttcaatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaag 24860349  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 276 - 341
Target Start/End: Complemental strand, 32008382 - 32008317
Alignment:
Q  276 tggttgatgacattagtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctca 341  Q
    |||||| |||||||||||| || ||||||||  ||||| |||||| |||||||||||| |||||||    
T  32008382 tggttggtgacattagtgatattgaccaaccaaaatgttacaagtgtctttcttctttctctctca 32008317  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 53937919 - 53937988
Alignment:
Q  283 tgacattagtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 352  Q
    |||||||||||| || |||||||| |||||||||||||| ||||||| | | ||| | ||||||||||||    
T  53937919 tgacattagtgatattgaccaaccacaatgtcacaagtaactttcttatgtctcttttacaatatttttt 53937988  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 276 - 352
Target Start/End: Complemental strand, 31846937 - 31846861
Alignment:
Q  276 tggttgatgacattagtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 352  Q
    |||||| ||||||| |||| || | |||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  31846937 tggttggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 31846861  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 6607526 - 6607465
Alignment:
Q  291 gtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 352  Q
    ||||||| ||||||||  ||||||||| ||  ||||||||||||||| |||||| |||||||    
T  6607526 gtgacattgaccaaccataatgtcacatgtggctttcttctttttctttcacaagatttttt 6607465  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 32224311 - 32224372
Alignment:
Q  291 gtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 352  Q
    ||||||| || ||||  |||||||||||||||||||||||||| | | | ||||||||||||    
T  32224311 gtgacattgatcaactacaatgtcacaagtatctttcttctttctttttgacaatatttttt 32224372  T

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Target: scaffold0343 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 12338 - 12281
Alignment:
Q  291 gtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatt 348  Q
    ||||||| |||||||| ||||||||||||| || ||||||||| ||| ||||||||||    
T  12338 gtgacattgaccaaccacaatgtcacaagtgtccttcttctttctctttcacaatatt 12281  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 42772096 - 42772035
Alignment:
Q  291 gtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 352  Q
    ||||||| |||||||| ||||||||||||| |||||||||||| | | ||| ||||||||||    
T  42772096 gtgacattgaccaaccacaatgtcacaagtgtctttcttctttctttttcataatatttttt 42772035  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 349
Target Start/End: Original strand, 1839983 - 1840056
Alignment:
Q  276 tggttgatgacattagtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattt 349  Q
    |||||| |||||||  |||||| | |||||| |||||||||| ||  ||||||||||||||| |||||| ||||    
T  1839983 tggttggtgacattgatgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagattt 1840056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 337
Target Start/End: Complemental strand, 29385431 - 29385370
Alignment:
Q  276 tggttgatgacattagtgacatggaccaacctcaatgtcacaagtatctttcttctttttct 337  Q
    |||||| ||||||| ||||||| | |||||| |||||||||| ||  |||||||||||||||    
T  29385431 tggttggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttctttttct 29385370  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 22894030 - 22893969
Alignment:
Q  291 gtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 352  Q
    ||||||| |||||||| |||||||||||||  ||||||||||||||| | |||| |||||||    
T  22894030 gtgacattgaccaaccacaatgtcacaagtgactttcttctttttctttaacaagatttttt 22893969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 276 - 333
Target Start/End: Original strand, 29081611 - 29081668
Alignment:
Q  276 tggttgatgacattagtgacatggaccaacctcaatgtcacaagtatctttcttcttt 333  Q
    |||||| ||||||  ||||||| |||||||| |||||||||||||| |||||||||||    
T  29081611 tggttggtgacatcggtgacattgaccaaccacaatgtcacaagtagctttcttcttt 29081668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 31342034 - 31342095
Alignment:
Q  291 gtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 352  Q
    ||||||| | |||||| |||||||||| ||| ||||||||||||||| |||||| |||||||    
T  31342034 gtgacattggccaaccacaatgtcacatgtagctttcttctttttctttcacaagatttttt 31342095  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 11512414 - 11512475
Alignment:
Q  291 gtgacatggaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 352  Q
    ||||||| | |||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  11512414 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 11512475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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