View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4942-Insertion-3 (Length: 378)
Name: NF4942-Insertion-3
Description: NF4942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4942-Insertion-3 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] scaffold0209 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 22589774 - 22589509
Alignment:
| Q |
8 |
gtgaaatgaatattgcatagaagaaatattagtatggaagaataactagaagtggggaacgtgtttatgaatgtatgcagggctgtcaatttatagaaca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22589774 |
gtgaaatgaatattgcatagaagaaatattagtatggaagaataactagaagtggggaacgtgtttatgaatgtatgcagggctgtcaatttatagaaca |
22589675 |
T |
|
| Q |
108 |
gaaaagatggtggatccatctgtatgatggtatgaattannnnnnnnnatatgctcattgctatgattcctttaaattgtagaatggaaaccaagctaac |
207 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22589674 |
gaaaagatggtggatccatatgtatgatggtatgaattaattttttttatatgctcattgctatgattcctttaaattgtagaatggaaaccaagctaac |
22589575 |
T |
|
| Q |
208 |
taatgtcttgtttagtctaaagttagattttatggagtggtctctaaatattgctatcactattag |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22589574 |
taatgtcttgtttagtctaaagttagattttatggagtggtctctaaatattgctatcactattag |
22589509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 22589389 - 22589299
Alignment:
| Q |
288 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgtatgattttagtgttgactatgtagagaaatgtgaatttagaaca |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22589389 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgtttgattttagtgttgactatgtagagaaatgtgaatttagaaca |
22589299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 30935298 - 30935556
Alignment:
| Q |
8 |
gtgaaatgaatattgcatagaagaaatattagtatggaagaataactagaagtggggaacgtgtttatgaatgtatgcagggctgtcaatttatagaaca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30935298 |
gtgaaatgaatattgcatagaagaaatattagtatggaagaataagtagaagtggggaacgtgtttatgaatgtatgcagggctgtcaatacatagaaca |
30935397 |
T |
|
| Q |
108 |
g-aaaagatggtggatccatctgtatgatggtatgaattannnnnnnnnatatgctcat-tgctatgattcctttaaattgtagaatggaaaccaagcta |
205 |
Q |
| |
|
| |||| |||||||||||||||||||||||| | |||||| || | | || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30935398 |
gaaaaaaatggtggatccatctgtatgatggaacgaatta---------atttttttatatgctatgattcctttaaattgtagaatggaaaccaagcta |
30935488 |
T |
|
| Q |
206 |
actaatgtcttgtttagtctaaagttagattttatggagtggtctctaaatattgctatcactattag |
273 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30935489 |
actaatgtcttttttagtctaaagttagattttatggagtggtctctaaattttgctatcactattag |
30935556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 30936267 - 30936357
Alignment:
| Q |
288 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgtatgattttagtgttgactatgtagagaaatgtgaatttagaaca |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30936267 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgtttgattttagtgttgactatgtagagaaatgtgaatttagaaca |
30936357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 34548205 - 34548115
Alignment:
| Q |
166 |
tgctatgattcctttaaattgtagaatggaaaccaagctaactaatgtcttgtttagtctaaagttagattttatggagtggtctctaaat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34548205 |
tgctatgattcctttaaattgtagaatggaaaccaagttaactaatgtcttttttagtctaaagttagattttatggagtggtctctaaat |
34548115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 34548336 - 34548260
Alignment:
| Q |
8 |
gtgaaatgaatattgcatagaagaaatattagtatggaagaataactagaagt-ggggaacgtgtttatgaatgtat |
83 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
34548336 |
gtgaaatgaatattgcatagaaaaaatattagtatggaagaataactaaaagtgggggaacgtgtttatgaatgtat |
34548260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 4377065 - 4377019
Alignment:
| Q |
288 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgt |
334 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4377065 |
tatctttgaaatctttcagtagcatttgattttagtgttgactctgt |
4377019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 291 - 378
Target Start/End: Complemental strand, 15437577 - 15437490
Alignment:
| Q |
291 |
ctttgaagtctttcagtagcatttgattttagtgttgactctgtatgattttagtgttgactatgtagagaaatgtgaatttagaaca |
378 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15437577 |
ctttgaaatctttcagtagcatttgattttagtgttgactctgtttgattttagtgttgactatgtagagaaatgtgaatttagaaca |
15437490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 291 - 378
Target Start/End: Complemental strand, 15528881 - 15528794
Alignment:
| Q |
291 |
ctttgaagtctttcagtagcatttgattttagtgttgactctgtatgattttagtgttgactatgtagagaaatgtgaatttagaaca |
378 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15528881 |
ctttgaaatctttcagtagcatttgattttagtgttgactctgtttgattttagtgttgactatgtagagaaatgtgaatttagaaca |
15528794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 8834617 - 8834571
Alignment:
| Q |
288 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgt |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8834617 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgt |
8834571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 7165 - 7211
Alignment:
| Q |
288 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgt |
334 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7165 |
tatctttgaaatctttcagtagcatttgattttagtgttgactctgt |
7211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 20619 - 20665
Alignment:
| Q |
288 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgt |
334 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20619 |
tatctttgaaatctttcagtagcatttgattttagtgttgactctgt |
20665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University