View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4942_high_3 (Length: 288)
Name: NF4942_high_3
Description: NF4942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4942_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 41614348 - 41614604
Alignment:
| Q |
18 |
tcatgtaggcttttacactaggagaatttcctgcaccaatgtctgtgtgtgcaataacttcaatttttggaggattcatcacttcagctgctcaattaat |
117 |
Q |
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| T |
41614348 |
tcatgtaggcttttacactaggagaatttcctgcaccaatggctgtgtgtgcaataacatcaatttttggaggattcatcacttcagctgctcaattaat |
41614447 |
T |
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| Q |
118 |
tgaatttcatgaaatcaaaactggttggccactagttagtgttggtgacatgattggctattctattctggtaatttcaaatattcttttttgagggaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41614448 |
tgaatttcatgaaatcaaaactggttggccactagttagtgttggtgacatgattggctattctattctggtaattttaaatattcttttttgagggaaa |
41614547 |
T |
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| Q |
218 |
ttttaaatattcttctattttagtactattgaatatacatttcaactagtattactt |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41614548 |
ttttaaatattcttctattttagtactattgaatatacatttcaactaatattactt |
41614604 |
T |
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