View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4942_high_6 (Length: 236)
Name: NF4942_high_6
Description: NF4942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4942_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 22589980 - 22589770
Alignment:
| Q |
11 |
ttattctctattatgtccacaac---aacccccaatttatttcgggattggagaactttgaccggcgaccaccgcgttggaaacctcagcagccgtaccg |
107 |
Q |
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| T |
22589980 |
ttattctctattatgtccacaaccaaaacccccaatttatttcgggattggagaactttgaccggcgaccaccgcgttggaaacctcagcagccgtaccg |
22589881 |
T |
|
| Q |
108 |
gaattcctgctgccgtgttagaaaactcatttgtagaattttatcctttttcttcatttgggtgagttctatctttttactcttctctaaaaacaattta |
207 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
22589880 |
gaattcctgccgccgtgttagaaaactcatttgtagaattttatcctttttcttcatttgggtgagttctatcgttttgctcttctctaaaaacaattta |
22589781 |
T |
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| Q |
208 |
atatttgtgaa |
218 |
Q |
| |
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||||||||||| |
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| T |
22589780 |
atatttgtgaa |
22589770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 30935093 - 30935302
Alignment:
| Q |
11 |
ttattctctattatgtccacaac---aacccccaatttatttcgggattggagaactttgaccggcgaccaccgcgttggaaacctcagcagccgtaccg |
107 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
30935093 |
ttattctctattatgtccacaaccaaaacccccaatttatttcgggattcgagaacttttaccggcgaccaccgcgttggaaacctcagcagccgtatcg |
30935192 |
T |
|
| Q |
108 |
gaattcctgctgccgtgttagaaaactcatttgtagaattttatcctttttcttcatttgggtgagttctatctttttactcttctctaaaaacaattta |
207 |
Q |
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|||||||| | ||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30935193 |
gaattcctcc-gccgtgtcagaaaactcaattgtagcattttatcctttttcttcatttgggtgagttctatctttttgctcttctctaaaaacaattta |
30935291 |
T |
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| Q |
208 |
atatttgtgaa |
218 |
Q |
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||||||||||| |
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| T |
30935292 |
atatttgtgaa |
30935302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 27308268 - 27308223
Alignment:
| Q |
36 |
cccccaatttatttcgggattggagaactttgaccggcgaccaccg |
81 |
Q |
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|||||||||||||||||||||| |||||||| |||| | ||||||| |
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| T |
27308268 |
cccccaatttatttcgggattgaagaactttcaccgtcaaccaccg |
27308223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 19278920 - 19278956
Alignment:
| Q |
45 |
tatttcgggattggagaactttgaccggcgaccaccg |
81 |
Q |
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| T |
19278920 |
tattttgggattggagaactttcaccggcgaccaccg |
19278956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 13077503 - 13077463
Alignment:
| Q |
42 |
atttatttcgggattggagaactttgaccggcgaccaccgc |
82 |
Q |
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|||||||| ||||| |||||||||| ||||||||||||||| |
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| T |
13077503 |
atttattttgggatcggagaactttcaccggcgaccaccgc |
13077463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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