View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4942_low_1 (Length: 556)
Name: NF4942_low_1
Description: NF4942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4942_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 56 - 317
Target Start/End: Original strand, 26016434 - 26016701
Alignment:
| Q |
56 |
cttagtctaacatctccatattttaactatttggaaatgtcccgtgcaacnnnnnnnnnn------cttccacaaaacaaagaatgagtccagcatggtt |
149 |
Q |
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| T |
26016434 |
cttagtctaacatctccatattttaactatttggtaatgtcccgtgcaacttttttttttttttttcttccacaaaacaaagaatgagtccagcatgatt |
26016533 |
T |
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| Q |
150 |
gtggggttatgctaattccaatccaaaattctagaaaaccggccaaactattgtgaaccaacgtaagtacgtagctaatttatcttaacctatcccaaat |
249 |
Q |
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| T |
26016534 |
gtggggttatgctaattccaatccaaaattctagaaaaccggccaaactattgtgaaccaacgtaagtacgtagctaatttatcttaacctatcccaaat |
26016633 |
T |
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| Q |
250 |
aacagccctacaaatattcggtcaaagtacttaaacaacgttttaattgtcaaaccctgtcttctttc |
317 |
Q |
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| T |
26016634 |
aacagccctacaaatattcggtcaaagtacttaaacaacgttttaattgtcaaaccctgtcttctttc |
26016701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 138 - 314
Target Start/End: Complemental strand, 26019824 - 26019645
Alignment:
| Q |
138 |
tccagcatggttgtggggttatgctaattccaatccaaaattctagaaaaccggccaaactattgtgaaccaac---gtaagtacgtagctaatttatct |
234 |
Q |
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| T |
26019824 |
tccagcatggttatggtgttgtgctaattccaatcgaaaattctagaaacctggccaaaccattgtgaaccaacaacgtaaggacgtagctaatttatct |
26019725 |
T |
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| Q |
235 |
taacctatcccaaataacagccctacaaatattcggtcaaagtacttaaacaacgttttaattgtcaaaccctgtcttct |
314 |
Q |
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| T |
26019724 |
taacccatccgaaataacagccccacaaatattcggtcaaagtacttaaacaacgttttaatagtcaaaccctgtcttct |
26019645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 423 - 504
Target Start/End: Original strand, 26016802 - 26016883
Alignment:
| Q |
423 |
tgtcttgttccgttgcaattccaaattctcctatattctctctttcctcttcccattacttcaccaaaaattgctatatcat |
504 |
Q |
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| T |
26016802 |
tgtcttgttccgttgcaattccaaattctcctatattctctctttcctcttcccattacttcaccaaaaattgctatatcat |
26016883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 378
Target Start/End: Original strand, 26016718 - 26016757
Alignment:
| Q |
339 |
gtcaaaccttgtcttctctataacactacttatactaaat |
378 |
Q |
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| T |
26016718 |
gtcaaaccttgtcttctctataacactacttatactaaat |
26016757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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