View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4942_low_4 (Length: 280)

Name: NF4942_low_4
Description: NF4942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4942_low_4
NF4942_low_4
[»] chr1 (2 HSPs)
chr1 (28-262)||(7098679-7098913)
chr1 (32-214)||(7582381-7582563)
[»] chr4 (2 HSPs)
chr4 (32-229)||(13615872-13616067)
chr4 (84-191)||(20297276-20297383)
[»] chr5 (11 HSPs)
chr5 (32-229)||(17982186-17982383)
chr5 (79-200)||(30399383-30399504)
chr5 (84-209)||(30243027-30243152)
chr5 (84-209)||(30748966-30749091)
chr5 (87-218)||(30059683-30059814)
chr5 (147-193)||(30522302-30522348)
chr5 (147-193)||(30562642-30562688)
chr5 (86-224)||(30714074-30714212)
chr5 (92-193)||(17418840-17418941)
chr5 (149-200)||(30474760-30474811)
chr5 (84-209)||(30677823-30677948)
[»] chr7 (1 HSPs)
chr7 (79-190)||(26706650-26706761)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 28 - 262
Target Start/End: Original strand, 7098679 - 7098913
Alignment:
Q  28 agatatggtagtttaccaagtgatgaaaaccgttcacaatgattgcaagaaccaacttcaagagtaactaaattactaagagttctgatccaacttggaa 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098679 agatatggtagtttaccaagtgatgaaaaccgttcacaatgattgcaagaaccaacttcaagagtaactaaattactaagagttctgatccaacttggaa 7098778  T
Q  128 agcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacaggagtcttgac 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098779 agcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacaggagtcttgac 7098878  T
Q  228 aggtgtatcaccacccttccatgacaagcataatt 262  Q
    |||||||||||||||||||||||||||||||||||    
T  7098879 aggtgtatcaccacccttccatgacaagcataatt 7098913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 7582563 - 7582381
Alignment:
Q  32 atggtagtttaccaagtgatgaaaaccgttcacaatgattgcaagaaccaacttcaagagtaactaaattactaagagttctgatccaacttggaaagca 131  Q
    |||||||||||||||||||||||||||||||||| ||  |||||     || |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  7582563 atggtagtttaccaagtgatgaaaaccgttcacagtgcatgcaacccttaatttcaagagtaactaaattaccaagagttctgatccaacttgggaagca 7582464  T
Q  132 taatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataa 214  Q
    ||| |||| |||| ||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| ||||    
T  7582463 taaacctttgtaaaaatctattttcaagctcttgagatttgtgtgaggttgaagcacttcaagtacttgatcgtcactaataa 7582381  T

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Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 32 - 229
Target Start/End: Original strand, 13615872 - 13616067
Alignment:
Q  32 atggtagtttaccaagtgatgaaaaccgttcacaatgattgcaagaaccaacttcaagagtaactaaattactaagagttctgatccaacttggaaagca 131  Q
    ||||||||||||||||||||||||||||||| |||||   ||||     ||||| ||||||||||||||||||| ||||||||||||||||||  |||||    
T  13615872 atggtagtttaccaagtgatgaaaaccgttctcaatgcacgcaatccttaactttaagagtaactaaattactatgagttctgatccaacttgagaagca 13615971  T
Q  132 taatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacaggagtcttgacag 229  Q
    |||||||| |||||||| ||||||||||||||||||||||| | |||| ||||||||||||| ||||||||||||||| |||| ||| ||||||||||    
T  13615972 taatcctttgtaagaatatattttcaagctcttgagatttgga-gagg-tgaagcacttcaagtacttgatcatcactaataataggggtcttgacag 13616067  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 191
Target Start/End: Complemental strand, 20297383 - 20297276
Alignment:
Q  84 ttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttga 183  Q
    ||||| || |||||||||||||||| |  | ||||||||||| || || ||||| |  ||  ||| ||||| ||||| |||||||||||  |||||||||    
T  20297383 ttcaaaagaaactaaattactaagaataattatccaacttggtaaccacaatccatcatagcaatttatttccaagcacttgagatttgactgaggttga 20297284  T
Q  184 agcacttc 191  Q
    ||||||||    
T  20297283 agcacttc 20297276  T

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Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 32 - 229
Target Start/End: Original strand, 17982186 - 17982383
Alignment:
Q  32 atggtagtttaccaagtgatgaaaaccgttcacaatgattgcaagaaccaacttcaagagtaactaaattactaagagttctgatccaacttggaaagca 131  Q
    ||||||||||||||||||||||||||||||||||| |  |||||     |||   |||||||| |||||| ||||||||||||||||||||||| |||||    
T  17982186 atggtagtttaccaagtgatgaaaaccgttcacaaagcatgcaatccttaacaataagagtaagtaaattgctaagagttctgatccaacttgggaagca 17982285  T
Q  132 taatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacaggagtcttgacag 229  Q
    ||||||||||||| ||| ||||||||||| ||| |||||| | ||||||||||||||||||| |||  |||||||||| |||| ||| ||||||||||    
T  17982286 taatccttggtaataatatattttcaagcccttaagatttctgtgaggttgaagcacttcaaatacacgatcatcactaataataggggtcttgacag 17982383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 30399383 - 30399504
Alignment:
Q  79 ccaacttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgag 178  Q
    |||| |||||||| |||||||||||||||| |  | ||||||||||| ||  ||||||| |  ||  ||| ||||||||||| |||||||||||  ||||    
T  30399383 ccaagttcaagagaaactaaattactaagaataattatccaacttggtaatgataatccgtcatagtaatttattttcaagcacttgagatttgagtgag 30399482  T
Q  179 gttgaagcacttcaattacttg 200  Q
    ||||||||||||| | ||||||    
T  30399483 gttgaagcacttcgagtacttg 30399504  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 30243152 - 30243027
Alignment:
Q  84 ttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttga 183  Q
    |||||||| || |||||||||||||    | ||||||||||| ||| ||||||| |  ||  ||  ||||||||||| |||||||||||  |||||||||    
T  30243152 ttcaagagaaattaaattactaagaagaattatccaacttggtaaggataatccctcatagaaacttattttcaagcacttgagatttgagtgaggttga 30243053  T
Q  184 agcacttcaattacttgatcatcact 209  Q
    |||||||||| |||||| ||| ||||    
T  30243052 agcacttcaagtacttgctcagcact 30243027  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 209
Target Start/End: Original strand, 30748966 - 30749091
Alignment:
Q  84 ttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttga 183  Q
    |||||||| || ||||||||||||| |  | ||||||||||| ||  |||||||||  ||  ||| |||| ||||||  ||||||||||  |||||||||    
T  30748966 ttcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttga 30749065  T
Q  184 agcacttcaattacttgatcatcact 209  Q
    |||||||||| |||||| ||| ||||    
T  30749066 agcacttcaagtacttgctcagcact 30749091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 30059683 - 30059814
Alignment:
Q  87 aagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagc 186  Q
    ||||| |||||||||||||||| |  | ||||||||||| ||| ||||||| |  ||  ||  |||||||||||  ||||||||||  |||||||||||     
T  30059683 aagagaaactaaattactaagaataattatccaacttggcaaggataatccctcatagaaacttattttcaagcagttgagatttgagtgaggttgaaga 30059782  T
Q  187 acttcaattacttgatcatcactgataacagg 218  Q
    ||||||| |||||| ||| |||| | ||||||    
T  30059783 acttcaagtacttgctcaacactaacaacagg 30059814  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 30522348 - 30522302
Alignment:
Q  147 atgtattttcaagctcttgagatttgtatgaggttgaagcacttcaa 193  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||    
T  30522348 atgtattttcaagatcttgagatttgagtgaggttgaagcacttcaa 30522302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 30562688 - 30562642
Alignment:
Q  147 atgtattttcaagctcttgagatttgtatgaggttgaagcacttcaa 193  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||    
T  30562688 atgtattttcaagatcttgagatttgagtgaggttgaagcacttcaa 30562642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 30714212 - 30714074
Alignment:
Q  86 caagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaag 185  Q
    |||||| |||||||||||||||| |  | ||||||||||| ||  |||||||||  ||  ||| |||| ||||||  ||||||||||  |||||||||||    
T  30714212 caagagaaactaaattactaagaataattatccaacttggtaatgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaag 30714113  T
Q  186 cacttcaattacttgatcatcactgataacaggagtctt 224  Q
    | |||| | |||||| ||| |||| | |||||| |||||    
T  30714112 ctcttcgagtacttgctcagcactaacaacaggggtctt 30714074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 193
Target Start/End: Complemental strand, 17418941 - 17418840
Alignment:
Q  92 taactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttc 191  Q
    ||||||||||||||||| | || ||||||||||| ||  ||| ||| |  ||  ||  ||||||||||| |||||||||||  |||||||||||||||||    
T  17418941 taactaaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttc 17418842  T
Q  192 aa 193  Q
    ||    
T  17418841 aa 17418840  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 30474760 - 30474811
Alignment:
Q  149 gtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttg 200  Q
    |||||||||| |||||||||||||  ||||||||||||| ||||| ||||||    
T  30474760 gtattttcaacctcttgagatttgagtgaggttgaagcatttcaagtacttg 30474811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 30677948 - 30677823
Alignment:
Q  84 ttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttga 183  Q
    |||||||| || ||||||||||||| |  | ||||||||||| ||  |||||| ||  ||  ||| |||| ||||||  ||||||||||  ||||||| |    
T  30677948 ttcaagagaaattaaattactaagaataattatccaacttggtaacgataatctttcatagtaatttattgtcaagcatttgagatttgagtgaggttta 30677849  T
Q  184 agcacttcaattacttgatcatcact 209  Q
    |||||||||| |||||| ||| ||||    
T  30677848 agcacttcaagtacttgctcagcact 30677823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 26706650 - 26706761
Alignment:
Q  79 ccaacttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgag 178  Q
    |||| |||||||| |||||||||||||||| | || | ||||||||| ||  ||||||| | |||  | | ||||| ||||| |||||||||||  ||||    
T  26706650 ccaagttcaagagaaactaaattactaagaatacttacccaacttggtaatgataatccgtcgtagtactttatttccaagcacttgagatttgagtgag 26706749  T
Q  179 gttgaagcactt 190  Q
    ||||||||||||    
T  26706750 gttgaagcactt 26706761  T

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