View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4942_low_5 (Length: 246)
Name: NF4942_low_5
Description: NF4942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4942_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 7279827 - 7280033
Alignment:
| Q |
18 |
tgatcctcctacccttctcacctaatcataaattcataaatcagattcaaccatttaaatctgattaaaacaagaaataaataaaatcataatcagaatg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
7279827 |
tgatcctcctacccttctcacctaatcataaattcataaatcagattcaac------------attaaaacaagaaataaataaaatcataatcaaaatg |
7279914 |
T |
|
| Q |
118 |
atgaaatcaatgactaaccgagaacagcttgggtacgagtagctctgatgatgatttcagtgcgcataggagtaaccctaacctcaacaccggaatagcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7279915 |
atgaaatcaatgactaaccgagaacagcttgggtacgagtagctctgatgatgatttcagtgcgcataggagtaaccctaacctcaacaccggaatagcc |
7280014 |
T |
|
| Q |
218 |
atcttcagcaagctctctg |
236 |
Q |
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||||||||||||||||||| |
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| T |
7280015 |
atcttcagcaagctctctg |
7280033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 16863577 - 16863476
Alignment:
| Q |
134 |
accgagaacagcttgggtacgagtagctctgatgatgatttcagtgcgcataggagtaaccctaacctcaacaccggaatagccatcttcagcaagctct |
233 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||| |
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| T |
16863577 |
accgagaacagcttgggtacgagtagccctgatgatgatctcagtgcgcataggggtaaccctaacttcaacaccagaataaccatcttcagcaagctct |
16863478 |
T |
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| Q |
234 |
ct |
235 |
Q |
| |
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|| |
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|
| T |
16863477 |
ct |
16863476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 50357534 - 50357622
Alignment:
| Q |
138 |
agaacagcttgggtacgagtagctctgatgatgatttcagtgcgcataggagtaaccctaacctcaacaccggaatagccatcttcagc |
226 |
Q |
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|||||||||||||||||||||||| |||||||||| || ||||| ||||| |||||||||| |||||||||||| || ||||||||||| |
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| T |
50357534 |
agaacagcttgggtacgagtagctttgatgatgatctcggtgcgaataggggtaaccctaatctcaacaccggagtaaccatcttcagc |
50357622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 18174718 - 18174823
Alignment:
| Q |
130 |
actaaccgagaacagcttgggtacgagtagctctgatgatgatttcagtgcgcataggagtaaccctaacctcaacaccggaatagccatcttcagcaag |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18174718 |
actaaccgagaacagcttgggtacgagtagctctgatgatgatttcagtgcgcatgggagtaaccctaacctcaacaccggcatagccatcttcagcaag |
18174817 |
T |
|
| Q |
230 |
ctctct |
235 |
Q |
| |
|
|||||| |
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|
| T |
18174818 |
ctctct |
18174823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 18225083 - 18224978
Alignment:
| Q |
130 |
actaaccgagaacagcttgggtacgagtagctctgatgatgatttcagtgcgcataggagtaaccctaacctcaacaccggaatagccatcttcagcaag |
229 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18225083 |
actaaccgagaacagcttgggtacgagtagctctgatgatgatttcagtgcgcatgggagtaaccctaacctcaacaccggcatagccatcttcagcaag |
18224984 |
T |
|
| Q |
230 |
ctctct |
235 |
Q |
| |
|
|||||| |
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|
| T |
18224983 |
ctctct |
18224978 |
T |
|
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