View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4942_low_6 (Length: 240)

Name: NF4942_low_6
Description: NF4942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4942_low_6
NF4942_low_6
[»] chr4 (41 HSPs)
chr4 (124-240)||(24420591-24420707)
chr4 (124-240)||(24470919-24471035)
chr4 (136-233)||(24421174-24421271)
chr4 (148-236)||(24421123-24421211)
chr4 (148-227)||(24470704-24470783)
chr4 (145-227)||(24477461-24477543)
chr4 (154-231)||(24470518-24470595)
chr4 (191-240)||(24476932-24476981)
chr4 (133-233)||(24421366-24421466)
chr4 (133-233)||(24470257-24470357)
chr4 (148-231)||(24421320-24421403)
chr4 (148-231)||(24470320-24470403)
chr4 (130-227)||(24420940-24421037)
chr4 (136-233)||(24470452-24470549)
chr4 (136-233)||(24470644-24470741)
chr4 (133-236)||(24420835-24420938)
chr4 (142-233)||(24420886-24420977)
chr4 (145-240)||(24421071-24421166)
chr4 (127-221)||(24420466-24420560)
chr4 (142-240)||(24421263-24421361)
chr4 (142-240)||(24470554-24470652)
chr4 (130-200)||(24477632-24477702)
chr4 (130-239)||(24420496-24420605)
chr4 (142-233)||(24470746-24470837)
chr4 (124-239)||(24471015-24471130)
chr4 (142-240)||(24470362-24470460)
chr4 (127-221)||(24471066-24471160)
chr4 (142-236)||(24477644-24477738)
chr4 (127-227)||(24406499-24406599)
chr4 (154-209)||(24420334-24420389)
chr4 (145-224)||(24420559-24420638)
chr4 (142-233)||(24470889-24470980)
chr4 (137-227)||(24406397-24406487)
chr4 (142-240)||(24477400-24477498)
chr4 (136-198)||(24481477-24481538)
chr4 (133-218)||(24420373-24420458)
chr4 (133-218)||(24471168-24471253)
chr4 (145-230)||(24476894-24476979)
chr4 (133-194)||(24482191-24482252)
chr4 (177-230)||(24482203-24482256)
chr4 (142-210)||(24477064-24477132)
[»] scaffold0879 (6 HSPs)
scaffold0879 (136-233)||(4503-4600)
scaffold0879 (148-236)||(4563-4651)
scaffold0879 (130-227)||(4737-4834)
scaffold0879 (145-240)||(4608-4703)
scaffold0879 (142-209)||(4797-4864)
scaffold0879 (154-240)||(4425-4511)
[»] chr2 (8 HSPs)
chr2 (136-236)||(41899956-41900056)
chr2 (133-227)||(41900541-41900635)
chr2 (130-212)||(41900412-41900494)
chr2 (136-212)||(41900220-41900296)
chr2 (133-200)||(41900280-41900347)
chr2 (133-199)||(41900089-41900155)
chr2 (151-240)||(41900288-41900377)
chr2 (145-227)||(41900349-41900431)
[»] chr1 (12 HSPs)
chr1 (145-233)||(11879457-11879545)
chr1 (148-221)||(11879508-11879581)
chr1 (133-221)||(11882447-11882535)
chr1 (133-221)||(11891681-11891769)
chr1 (145-209)||(11902053-11902117)
chr1 (133-221)||(11882351-11882439)
chr1 (133-221)||(11891585-11891673)
chr1 (145-218)||(11902101-11902174)
chr1 (178-233)||(11879442-11879497)
chr1 (136-185)||(11902380-11902429)
chr1 (142-218)||(11905397-11905473)
chr1 (181-221)||(52819136-52819176)
[»] chr3 (2 HSPs)
chr3 (14-54)||(13569673-13569713)
chr3 (16-54)||(13569882-13569920)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 24420707 - 24420591
Alignment:
Q  124 tacgtttataaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24420707 tacgtttataaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccacctccatatg 24420608  T
Q  224 tctataagtcccctcct 240  Q
    |||||||||||||||||    
T  24420607 tctataagtcccctcct 24420591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 24470919 - 24471035
Alignment:
Q  124 tacgtttataaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatg 223  Q
    ||||||||||| || ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24470919 tacgtttataagtcacctcctccagcatctccttcaccacctcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatacg 24471018  T
Q  224 tctataagtcccctcct 240  Q
    |||||||||||||||||    
T  24471019 tctataagtcccctcct 24471035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 24421271 - 24421174
Alignment:
Q  136 tctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtc 233  Q
    ||||||||||||||||| || ||||| || || || ||| | ||||||||||||||||| |||||||||||||| || |||||||||||||| |||||    
T  24421271 tctcctcctccaccatcaccctcacctcccccaccttatgtttacaagtcaccaccacctccatccccttcacctcctcctccatatgtctacaagtc 24421174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 24421211 - 24421123
Alignment:
Q  148 ccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtcccc 236  Q
    ||||| |||||||| || ||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||| | || ||||||||    
T  24421211 ccatccccttcacctcctcctccatatgtctacaagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtcccc 24421123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 24470704 - 24470783
Alignment:
Q  148 ccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtcta 227  Q
    |||||||||||||| || ||||||||| |||||||||||||||| ||||||||||| || ||||| || |||||||||||    
T  24470704 ccatctccttcacctcctcctccatatgtctacaagtcaccacctccaccatccccatctccaccaccaccatatgtcta 24470783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 24477543 - 24477461
Alignment:
Q  145 ccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtcta 227  Q
    ||||||||||| ||||| || ||||||||| |||||||||||||||| || ||||| |||||||| ||||| |||||||||||    
T  24477543 ccaccatctccctcacctccacctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtcta 24477461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 24470518 - 24470595
Alignment:
Q  154 ccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataag 231  Q
    |||||||| || ||||||||| |||||||||||||||| || ||||| |||||||| ||||| |||||||||||||||    
T  24470518 ccttcacctcctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataag 24470595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 24476981 - 24476932
Alignment:
Q  191 caccaccatccccttcaccaccccctccatatgtctataagtcccctcct 240  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24476981 caccaccatccccttcaccaccccctccatatgtctatatgtcccctcct 24476932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 24421466 - 24421366
Alignment:
Q  133 aaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagt 232  Q
    |||||||| |||||||||||||| |||||||| ||||| ||| | |||||||| |||||||| ||||| || || || || |||||||||||||| ||||    
T  24421466 aaatctccacctccaccatctccctcaccacctcctccgtatgtgtacaagtccccaccacctccatctccctctcctcctcctccatatgtctacaagt 24421367  T
Q  233 c 233  Q
    |    
T  24421366 c 24421366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 24470257 - 24470357
Alignment:
Q  133 aaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagt 232  Q
    |||||||| |||||||||||||| |||||||| ||||| ||| | |||||||| |||||||| ||||| || || || || |||||||||||||| ||||    
T  24470257 aaatctccacctccaccatctccctcaccacctcctccgtatgtgtacaagtccccaccacctccatctccctctcctcctcctccatatgtctacaagt 24470356  T
Q  233 c 233  Q
    |    
T  24470357 c 24470357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 24421403 - 24421320
Alignment:
Q  148 ccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataag 231  Q
    |||||||| || || || ||||||||| |||||||||||||||| || ||||| |||||||| ||||| |||||||||||||||    
T  24421403 ccatctccctctcctcctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataag 24421320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 24470320 - 24470403
Alignment:
Q  148 ccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataag 231  Q
    |||||||| || || || ||||||||| |||||||||||||||| || ||||| |||||||| ||||| |||||||||||||||    
T  24470320 ccatctccctctcctcctcctccatatgtctacaagtcaccacctcctccatcaccttcacctcccccaccatatgtctataag 24470403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 24421037 - 24420940
Alignment:
Q  130 tataaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtcta 227  Q
    |||||||| || || || |||||||| || || || || |||||| |||||||||||||||| ||||||||||| || ||||| ||||||||||||||    
T  24421037 tataaatcaccaccacccccatctccatccccccctccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccatatgtcta 24420940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 24470452 - 24470549
Alignment:
Q  136 tctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtc 233  Q
    ||||||||||||||| | || ||||| || || || ||| | ||||||||||||||||| || ||||||||||| || |||||||||||||| |||||    
T  24470452 tctcctcctccaccaacaccctcacctcccccgccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatatgtctacaagtc 24470549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 24470644 - 24470741
Alignment:
Q  136 tctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtc 233  Q
    ||||||||||||||||| ||||| || || || || ||||| || ||||| |||||||| ||||| |||||||| || |||||||||||||| |||||    
T  24470644 tctcctcctccaccatcaccttctcctcccccaccctatatttataagtcgccaccacctccatctccttcacctcctcctccatatgtctacaagtc 24470741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 24420938 - 24420835
Alignment:
Q  133 aaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagt 232  Q
    |||||||| || |||||||| |||||||| || || |||||| | || |||||||||||||| || |||||||| || || ||||||||||| || ||||    
T  24420938 aaatctccacccccaccatcaccttcaccccctccaccatatgtatataagtcaccaccacctccttccccttcccctcctcctccatatgtttacaagt 24420839  T
Q  233 cccc 236  Q
    ||||    
T  24420838 cccc 24420835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 24420977 - 24420886
Alignment:
Q  142 cctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtc 233  Q
    ||||||||||| || || ||||| ||||||||| ||||||| || ||||| |||||||| |||||||| || || |||||||| ||||||||    
T  24420977 cctccaccatccccatctccaccacctccatatgtctacaaatctccacccccaccatcaccttcaccccctccaccatatgtatataagtc 24420886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 240
Target Start/End: Complemental strand, 24421166 - 24421071
Alignment:
Q  145 ccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtcccctcct 240  Q
    |||||||| || || ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| || || |||||| | || ||||| ||||||    
T  24421166 ccaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcaccccctccaccatatatatacaagtctcctcct 24421071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 24420560 - 24420466
Alignment:
Q  127 gtttataaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccata 221  Q
    ||||| ||||||||||| ||||||||||||||||| || || || ||| |||| |||||||| ||||| || ||  |||||||||| ||||||||    
T  24420560 gtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataagtcacctccacctccttcagcttcaccacctcctccata 24420466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 24421361 - 24421263
Alignment:
Q  142 cctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtcccctcct 240  Q
    ||||| |||||||||||||| || || |||||| |||| |||   ||||||||||| || || |||||||| |||||||||||||| ||||| ||||||    
T  24421361 cctcctccatctccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 24421263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 24470554 - 24470652
Alignment:
Q  142 cctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtcccctcct 240  Q
    ||||| |||||||||||||| || || |||||| |||| |||   ||||||||||| || || |||||||| |||||||||||||| ||||| ||||||    
T  24470554 cctcctccatctccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 24470652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 24477702 - 24477632
Alignment:
Q  130 tataaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatc 200  Q
    ||||| |||||||| ||||||||||| |||||||| ||||||||| | |||||||| |||||||| |||||    
T  24477702 tataagtctcctccaccaccatctccctcaccacctcctccatatgtgtacaagtccccaccacctccatc 24477632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 239
Target Start/End: Complemental strand, 24420605 - 24420496
Alignment:
Q  130 tataaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctata 229  Q
    ||||| || |||||||| || ||||||||||| || ||||||||| | ||||| || || || |||||||| |||||||| || || || ||||||||||    
T  24420605 tataagtcccctcctcctccttctccttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctata 24420506  T
Q  230 agtcccctcc 239  Q
    |||| |||||    
T  24420505 agtcacctcc 24420496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 24470746 - 24470837
Alignment:
Q  142 cctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtc 233  Q
    ||||||||||| || || ||||| || |||||| ||||||| || ||||| |||||||| |||||||| || || |||||||| ||||||||    
T  24470746 cctccaccatccccatctccaccaccaccatatgtctacaaatctccacccccaccatcaccttcaccccctccaccatatgtatataagtc 24470837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 24471015 - 24471130
Alignment:
Q  124 tacgtttataaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatg 223  Q
    ||||| ||||| || |||||||| || ||||||||||| || ||||||||| | ||||| || || || |||||||| |||||||| || || || ||||    
T  24471015 tacgtctataagtcccctcctcctccttctccttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcacctcctccaccctatg 24471114  T
Q  224 tctataagtcccctcc 239  Q
    || ||||||| |||||    
T  24471115 tccataagtcacctcc 24471130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 24470362 - 24470460
Alignment:
Q  142 cctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtcccctcct 240  Q
    ||||| ||||| |||||||| || || |||||| |||| |||   ||||||||||| || || |||||||| |||||||||||||| ||||| ||||||    
T  24470362 cctcctccatcaccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 24470460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 24471066 - 24471160
Alignment:
Q  127 gtttataaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccata 221  Q
    ||||| ||||||||||| ||||||||||||||||| || || || ||| || | |||||||| ||||| || ||  |||||||||| ||||||||    
T  24471066 gtttacaaatctcctcccccaccatctccttcacctcctccaccctatgtccataagtcacctccacctccttcagcttcaccacctcctccata 24471160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 24477738 - 24477644
Alignment:
Q  142 cctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtcccc 236  Q
    ||||||| ||| || |||||||| || || ||| |||| ||||| || ||||||||||| || |||||||| ||||||||||| || ||||||||    
T  24477738 cctccacgatccccatcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcaccacctcctccatatgtgtacaagtcccc 24477644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 24406599 - 24406499
Alignment:
Q  127 gtttataaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtct 226  Q
    ||||| |||||||| || ||||||||||||||||| || || || ||| |||  |||||||||||||| || || |||||||| || ||||| ||| |||    
T  24406599 gtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccaccacctccttcgccttcaccgccacctccttatatct 24406500  T
Q  227 a 227  Q
    |    
T  24406499 a 24406499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 24420389 - 24420334
Alignment:
Q  154 ccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcacc 209  Q
    ||||||||||||||||| ||||| |||||||| ||||| |||||||| || |||||    
T  24420389 ccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacc 24420334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 24420638 - 24420559
Alignment:
Q  145 ccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgt 224  Q
    |||||||| ||||||||||| ||||||||| |||| ||||| || || || || || |||||||| || |||||||||||    
T  24420638 ccaccatccccttcaccaccacctccatatgtctataagtcccctcctcctccttctccttcaccccctcctccatatgt 24420559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 24470889 - 24470980
Alignment:
Q  142 cctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtc 233  Q
    |||||||| ||||| || ||||| ||||||||  | || |||||||| || ||| |||| ||||||||||| ||||||||| |||| |||||    
T  24470889 cctccaccgtctccatccccaccacctccatacgtttataagtcacctcctccagcatctccttcaccacctcctccatatatctacaagtc 24470980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 24406487 - 24406397
Alignment:
Q  137 ctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtcta 227  Q
    |||| |||||||||||||||||||| || || || ||| |||  |||||||||||||| || || |||||||| || ||||| ||| ||||    
T  24406487 ctccacctccaccatctccttcacctcctccaccttatgtctttaagtcaccaccacctccttcgccttcaccgccacctccttatatcta 24406397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 24477498 - 24477400
Alignment:
Q  142 cctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtcccctcct 240  Q
    ||||| |||||||||||||| || || |||||| ||||||||   || || | ||| || || |||||||| |||||||||||||| ||||| ||||||    
T  24477498 cctcctccatctccttcacctcccccaccatatgtctacaagagtcctcctctaccttctccatcaccaccacctccatatgtctacaagtctcctcct 24477400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 24481538 - 24481477
Alignment:
Q  136 tctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccacca 198  Q
    |||||||||||||||||||| |||||||| || |||||| | |||||||| ||||| ||||||    
T  24481538 tctcctcctccaccatctccatcaccacc-ccaccatatgtatacaagtcgccacctccacca 24481477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 24420458 - 24420373
Alignment:
Q  133 aaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctcc 218  Q
    |||||||| |||||||| ||||| ||||| || || ||||||  ||| |||||||| ||||| || || ||||||||||| |||||    
T  24420458 aaatctccacctccaccttctccatcacctcctccaccatatggctataagtcaccgccacctccttcgccttcaccaccgcctcc 24420373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 24471168 - 24471253
Alignment:
Q  133 aaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctcc 218  Q
    |||||||| |||||||| ||||| ||||| || || |||||| |||| | |||||| ||||| || || ||||||||||| |||||    
T  24471168 aaatctccacctccaccttctccatcacctcctccaccatatgtctataggtcaccgccacctccttcgccttcaccaccgcctcc 24471253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 24476979 - 24476894
Alignment:
Q  145 ccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataa 230  Q
    |||||||| ||||||||||| ||||||||| |||| | ||| || || || |  || |||||| |||| |||||||||||||||||    
T  24476979 ccaccatccccttcaccaccccctccatatgtctatatgtcccctcctcctcattctccttcatcacctcctccatatgtctataa 24476894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 24482252 - 24482191
Alignment:
Q  133 aaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccacc 194  Q
    |||||||| || ||||||||||| |||||||| ||||| ||| |||| || |||||||||||    
T  24482252 aaatctccaccaccaccatctccatcaccaccacctccttatgtctataaatcaccaccacc 24482191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 24482256 - 24482203
Alignment:
Q  177 ctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataa 230  Q
    |||||| || |||||||||||||| || |||||||| ||||| |||||||||||    
T  24482256 ctacaaatctccaccaccaccatctccatcaccaccacctccttatgtctataa 24482203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 24477132 - 24477064
Alignment:
Q  142 cctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcacca 210  Q
    ||||| |||||||| || ||||| ||||||||| | ||||| || ||||| |||||||||||| |||||    
T  24477132 cctcctccatctccatccccaccacctccatatgtttacaaatctccacccccaccatcccctccacca 24477064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 4503 - 4600
Alignment:
Q  136 tctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtc 233  Q
    ||||||||||||||||| || ||||| || || |||||| | ||||||||||||||||| |||||||||||||| || |||||||||||||| |||||    
T  4503 tctcctcctccaccatcaccctcacctcccccaccatatgtttacaagtcaccaccacctccatccccttcacctcctcctccatatgtctacaagtc 4600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 4563 - 4651
Alignment:
Q  148 ccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtcccc 236  Q
    ||||| |||||||| || ||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||| | || ||||||||    
T  4563 ccatccccttcacctcctcctccatatgtctacaagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtcccc 4651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 4737 - 4834
Alignment:
Q  130 tataaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtcta 227  Q
    |||||||| || || || |||||||| || || || || |||||| |||||||||||||||| ||||||||||| || ||||| ||||||||||||||    
T  4737 tataaatcaccaccacccccatctccatccccccctccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccatatgtcta 4834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 4608 - 4703
Alignment:
Q  145 ccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtcccctcct 240  Q
    |||||||| || || ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| || || |||||| | || ||||| ||||||    
T  4608 ccaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcaccccctccaccatatatatacaagtctcctcct 4703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 4797 - 4864
Alignment:
Q  142 cctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcacc 209  Q
    ||||||||||| || || ||||| ||||||||| ||||||| || ||||| |||||||| ||||||||    
T  4797 cctccaccatccccatctccaccacctccatatgtctacaaatctccacccccaccatcaccttcacc 4864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 4425 - 4511
Alignment:
Q  154 ccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtcccctcct 240  Q
    |||||||| || || |||||| |||| |||   ||||||||||| || || |||||||| |||||||||||||| ||||| ||||||    
T  4425 ccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 4511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 41900056 - 41899956
Alignment:
Q  136 tctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtccc 235  Q
    ||||| ||||| || ||||||||||| || || |||||| |||||||||| ||||||||||| ||||| |||||||| ||||||||||| || |||||||    
T  41900056 tctccacctcctccctctccttcacctccaccaccatatgtctacaagtccccaccaccaccttccccctcaccacctcctccatatgtttacaagtccc 41899957  T
Q  236 c 236  Q
    |    
T  41899956 c 41899956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 41900635 - 41900541
Alignment:
Q  133 aaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtcta 227  Q
    |||||||| || |||||||||||||||||||| || || ||||| || |||||||||||||| || || |||||||| || || |||||||||||    
T  41900635 aaatctccaccaccaccatctccttcaccacctccaccttatatttataagtcaccaccacctccctctccttcacctcctccgccatatgtcta 41900541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 41900494 - 41900412
Alignment:
Q  130 tataaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccacc 212  Q
    ||||| |||||||||||||||||| | |||| ||| | | | || ||||||||||| ||||||||||||||||| ||||||||    
T  41900494 tataagtctcctcctccaccatctgcatcactacccctttcttacatctacaagtccccaccaccaccatccccatcaccacc 41900412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 41900296 - 41900220
Alignment:
Q  136 tctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccacc 212  Q
    |||||||||||||||||| | |||| ||| | | | || ||||||||||| ||||||||||||||||| ||||||||    
T  41900296 tctcctcctccaccatctgcatcactacccctttcttacatctacaagtccccaccaccaccatccccatcaccacc 41900220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 41900347 - 41900280
Alignment:
Q  133 aaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatc 200  Q
    ||||||||||| || || |||||||||||||| ||||||||| |||||||||| || || ||||||||    
T  41900347 aaatctcctccacctccctctccttcaccaccacctccatatgtctacaagtctcctcctccaccatc 41900280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 41900155 - 41900089
Alignment:
Q  133 aaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccat 199  Q
    ||||||||||| || || |||||||||||||||||||||||| | ||||| || || ||||||||||    
T  41900155 aaatctcctccacctccctctccttcaccaccgcctccatatgtttacaaatctcctccaccaccat 41900089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 41900377 - 41900288
Alignment:
Q  151 tctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtcccctcct 240  Q
    ||||||||||  || || |||||| ||||||| || || ||||| || || ||||||||||| |||||||||||||| ||||| ||||||    
T  41900377 tctccttcacttcctccaccatatgtctacaaatctcctccacctccctctccttcaccaccacctccatatgtctacaagtctcctcct 41900288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 41900431 - 41900349
Alignment:
Q  145 ccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtcta 227  Q
    |||||||| || |||||||| || || ||||| ||||||||||||||||| || || |||||||  || || |||||||||||    
T  41900431 ccaccatccccatcaccacctccaccttatatttacaagtcaccaccacctccttctccttcacttcctccaccatatgtcta 41900349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 11879457 - 11879545
Alignment:
Q  145 ccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtc 233  Q
    |||||| ||||||||||||| ||||| ||| | ||||||||||||||||| ||||| ||||||||||| ||||| ||||| || |||||    
T  11879457 ccaccaactccttcaccaccacctccttatgtgtacaagtcaccaccaccgccatctccttcaccaccacctccttatgtgtacaagtc 11879545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 11879508 - 11879581
Alignment:
Q  148 ccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccata 221  Q
    ||||||||||||||||| ||||| ||| | |||||||||||||||||||| || ||||| ||||| || |||||    
T  11879508 ccatctccttcaccaccacctccttatgtgtacaagtcaccaccaccaccctcaccttccccaccaccaccata 11879581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 11882447 - 11882535
Alignment:
Q  133 aaatctcctcctccaccatctccttcaccaccgcctccata-tatctacaagtcaccaccaccaccatccccttcaccaccccctccata 221  Q
    ||||||||||| |||||||| || |||||||| ||||| || ||| ||||| ||||| |||||||||||||| |||||||| ||||||||    
T  11882447 aaatctcctccaccaccatcaccatcaccaccacctccttactat-tacaaatcacctccaccaccatccccatcaccaccacctccata 11882535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 11891681 - 11891769
Alignment:
Q  133 aaatctcctcctccaccatctccttcaccaccgcctccata-tatctacaagtcaccaccaccaccatccccttcaccaccccctccata 221  Q
    ||||||||||| |||||||| || |||||||| ||||| || ||| ||||| ||||| |||||||||||||| |||||||| ||||||||    
T  11891681 aaatctcctccaccaccatcaccatcaccaccacctccttactat-tacaaatcacctccaccaccatccccatcaccaccacctccata 11891769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 11902053 - 11902117
Alignment:
Q  145 ccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcacc 209  Q
    |||||| || |||||||||| ||||| ||| | ||||||||||||||||||||||| ||||||||    
T  11902053 ccaccaacttcttcaccaccacctccttatgtatacaagtcaccaccaccaccatctccttcacc 11902117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 11882351 - 11882439
Alignment:
Q  133 aaatctcctcctccaccatctccttcaccaccgcctccata-tatctacaagtcaccaccaccaccatccccttcaccaccccctccata 221  Q
    ||||||||||| |||||||| || |||||||| ||||| || ||| ||||| ||||| ||||||||||| || ||||| |||||||||||    
T  11882351 aaatctcctccaccaccatcaccatcaccaccacctccctactat-tacaaatcacctccaccaccatcaccatcacctccccctccata 11882439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 11891585 - 11891673
Alignment:
Q  133 aaatctcctcctccaccatctccttcaccaccgcctccata-tatctacaagtcaccaccaccaccatccccttcaccaccccctccata 221  Q
    ||||||||||| |||||||| || |||||||| ||||| || ||| ||||| ||||| ||||||||||| || ||||| |||||||||||    
T  11891585 aaatctcctccaccaccatcaccatcaccaccacctccctactat-tacaaatcacctccaccaccatcaccatcacctccccctccata 11891673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 11902101 - 11902174
Alignment:
Q  145 ccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctcc 218  Q
    |||||||||||||||||  | ||||| ||| | ||||||||||||||||| |||||||| ||||| || |||||    
T  11902101 ccaccatctccttcaccgtcacctccttatgtgtacaagtcaccaccacctccatccccatcacccccacctcc 11902174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 11879442 - 11879497
Alignment:
Q  178 tacaagtcaccaccaccaccatccccttcaccaccccctccatatgtctataagtc 233  Q
    ||||||||||||||||||||| | ||||||||||| ||||| ||||| || |||||    
T  11879442 tacaagtcaccaccaccaccaactccttcaccaccacctccttatgtgtacaagtc 11879497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 11902380 - 11902429
Alignment:
Q  136 tctcctcctccaccatctccttcaccaccgcctccatatatctacaagtc 185  Q
    |||||||| ||||||||||| |||||||| |||||||||  |||||||||    
T  11902380 tctcctccaccaccatctccctcaccacctcctccatattactacaagtc 11902429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 11905397 - 11905473
Alignment:
Q  142 cctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctcc 218  Q
    |||||||| ||||| || || || || ||||||  |||||| || |||||||||||||| || ||||||||||||||    
T  11905397 cctccaccttctccctctcctcctcccccatattactacaaatctccaccaccaccatcaccatcaccaccccctcc 11905473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 52819176 - 52819136
Alignment:
Q  181 aagtcaccaccaccaccatccccttcaccaccccctccata 221  Q
    ||||||||||| ||||||||||| ||||| |||||||||||    
T  52819176 aagtcaccacctccaccatccccatcacctccccctccata 52819136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 13569673 - 13569713
Alignment:
Q  14 catcaccacaaccatatcttccttcatcacatggagcacct 54  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13569673 catcaccacaaccatatcttccttcatcacatggagcacct 13569713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 13569882 - 13569920
Alignment:
Q  16 tcaccacaaccatatcttccttcatcacatggagcacct 54  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  13569882 tcaccaccaccatatcttcctacatcacatggagcacct 13569920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University