View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4943-Insertion-2 (Length: 983)
Name: NF4943-Insertion-2
Description: NF4943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4943-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 296 - 792
Target Start/End: Complemental strand, 35978197 - 35977699
Alignment:
| Q |
296 |
tactaatagtgctaactcgcaatcacctatatatgttttatcgtatatgaaactcataactcacaagtaaacaatctaagaaatcaaaaagaaaactaat |
395 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35978197 |
tactaatagtgctaactcgcaatcacctatatatgttttatcgtatatgaaactcataactcacaagtaaacaatctaagaaatcaaaaagaaaactaat |
35978098 |
T |
|
| Q |
396 |
tacaagatacaaaaagtgtcaactacaatat--catagtcatctccaaggcaagattnnnnnnncacttgttaggaaaacaaagcaaatctagaaagcga |
493 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || |
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| T |
35978097 |
tacaagatacaaaaagtgtcaactacaatatatcatagtcatctccaaggcaagatttaaaaaacacttcttaggaaaacaaagcaaatctagaaagtga |
35977998 |
T |
|
| Q |
494 |
aagaagtagggtacttgatgaaggataagaaaagttgagcaaagctttcatagcagcttggttgtgagcttctttggaggaatgaaaaatatcagaagaa |
593 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35977997 |
aagaagtagggtacttgatgaaggataagaaaagttgagcaaagctttcatagcagcttggttgtgagcttctttggaggaatgaaaaatatcagaagaa |
35977898 |
T |
|
| Q |
594 |
gtaaaggttaaaccattgacaaagacagagcccttaaaacttggattgtgtggtggaccatcaacatatatggaagagtattcaggcaaactccactttc |
693 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35977897 |
gtaaaggttaaaccattgacaaagacagagcccttaaaacttggattgtgtggtggaccatcaacatatatggaagagtattcaggcaaactccactttc |
35977798 |
T |
|
| Q |
694 |
tccggtgacaaaactcctgcagcctcgacttgtacattttcactttcactcccactactatggttatcacatgaacatatataagattattgtgaagaa |
792 |
Q |
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| T |
35977797 |
tccggtgacaaaactcctgcagcctcgacttgtacattttcactttcactcccactactatggttatcacatgaacatatataagattattgtgaagaa |
35977699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 35978484 - 35978224
Alignment:
| Q |
8 |
gtaacctgtgaatttgatgtaacctagtagttcctataatcaaattgttttccttatcctccagtcattgctaggcagagtagtactaaaggaaaaatac |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35978484 |
gtaacctgtgaatttgatgtaacctagtagttcctataatcaaattgttttccttatccttcagtcattgctaggcagagtagtactaaaggaaaaatac |
35978385 |
T |
|
| Q |
108 |
acnnnnnnncaaacgtgatttgaaaatacagaaaattatgcttaattccacaacaaggttccatttgtctattataaaacaatcatccatctctgctgat |
207 |
Q |
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|| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35978384 |
acaaaaaa-caaacgtgatttgaaaatacataaaattatgcttaagtccacaacaaggttccatttgtctattatgaaacaatcatccatctctgctgat |
35978286 |
T |
|
| Q |
208 |
ttcccaatcacctatgtttatcattatcatatatgaagctcataaaacgatcactctcaacc |
269 |
Q |
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| T |
35978285 |
ttcccaatcacctatgtttatcattatcatatatgaagctcataaaatgatcactctcaacc |
35978224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 342 - 737
Target Start/End: Complemental strand, 35967963 - 35967567
Alignment:
| Q |
342 |
atgaaactcataactcacaagtaaacaatctaagaaatcaaaaagaaaactaattacaagatacaaaaagtgtcaactacaatatcatagtcatctccaa |
441 |
Q |
| |
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||||| ||| ||||||| |||||||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||| |
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| T |
35967963 |
atgaagctcctaactcataagtaaacaatctaagaactcaaacagaaaactaatttcaagataccaaaagtgtcaactacaagatcataatcatctccaa |
35967864 |
T |
|
| Q |
442 |
ggcaagattnnnnnnnca---cttgttaggaaaacaaagcaaatctagaaa-gcgaaagaagtagggtacttgatgaaggataagaaaagttgagcaaag |
537 |
Q |
| |
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|| |||||| | ||| ||||| |||||||||||| | ||||| | || |||||||||||||||||||||| |||||||||||||||||| |
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| T |
35967863 |
ggtaagattaaaaaaatatatctttttagggaaacaaagcaaaaccagaaaagagaggaaagtagggtacttgatgaaggagaagaaaagttgagcaaag |
35967764 |
T |
|
| Q |
538 |
ctttcatagcagcttggttgtgagcttctttggaggaatgaaaaatatcagaagaagtaaaggttaaaccattgacaaagacagagcccttaaaacttgg |
637 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35967763 |
ctttcagagcagcttggttgtgagcttctttggaggaatgaaaagcatcagaag---taaaggttaaaccattgacaaagacagagcccttaaagcttgg |
35967667 |
T |
|
| Q |
638 |
attgtgtggtggaccatcaacatatatggaagagtattcaggcaaactccactttctccggtgacaaaactcctgcagcctcgacttgtacattttcact |
737 |
Q |
| |
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||||||||||||||||| |||| | || |||||| | |||||||||||||||||| ||||||||| ||||||||||||| ||| | |||||||||| |
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| T |
35967666 |
tttgtgtggtggaccatcgacattcaaggcagagtacttaggcaaactccactttctttggtgacaaagctcctgcagcctcatcttattcattttcact |
35967567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 816 - 983
Target Start/End: Complemental strand, 35977700 - 35977536
Alignment:
| Q |
816 |
aatgaggaaccatgtgaaactaacaatattaaccatgtgaatgttagtagtacatgatgaacggttgcatgtagagaaatgcaattgtagtgaaggacag |
915 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35977700 |
aatgaggaaccatgtgaaactaacaatattaaccatgtgaatgttagtagtacatgatgaacggttgcatgtagagaaatgcaattgtagtgaagga--- |
35977604 |
T |
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| Q |
916 |
aagaagggtcatgaaaaatagacagttcctactaagcaggagtatagtgttgagtaagccatgtggtc |
983 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35977603 |
gagaagggtcatgaaaaatagacagttcctaccaagcaggagtatagtgttgagtaagccatgtggtc |
35977536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 485 - 745
Target Start/End: Complemental strand, 35955385 - 35955125
Alignment:
| Q |
485 |
agaaagcgaaagaagtagggtacttgatgaaggataagaaaagttgagcaaagctttcatagcagcttggttgtgagcttctttggaggaatgaaaaata |
584 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||| ||| |||||| | ||||||||||||||||||||||| ||||||||| |||||||| || || |
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| T |
35955385 |
agaaagagaaagaagtagggtacttgataaaggagaagtgaagttgcggaaagctttcatagcagcttggttttgagcttctccggaggaattgaaggta |
35955286 |
T |
|
| Q |
585 |
tcagaagaagtaaaggttaaaccattgacaaagacagagcccttaaaacttggattgtgtggtggaccatcaacatatatggaagagtattcaggcaaac |
684 |
Q |
| |
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||||||||||||||||| | ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||| | || ||| || | |||||||| |
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| T |
35955285 |
tcagaagaagtaaaggtaaggccattcacaaaaacagagcccttaaagcttggattgtgtggtggaccgtcaacatgaaaggcagaatacttaggcaaac |
35955186 |
T |
|
| Q |
685 |
tccactttctccggtgacaaaactcctgcagcctcgacttgtacattttcactttcactcc |
745 |
Q |
| |
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||||| |||||||||||| | ||||||||| | ||||||| ||||||||||| |||||| |
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| T |
35955185 |
tccaccgtctccggtgacacagctcctgcagttttgacttgtgcattttcacttacactcc |
35955125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 515 - 644
Target Start/End: Complemental strand, 35950545 - 35950416
Alignment:
| Q |
515 |
aggataagaaaagttgagcaaagctttcatagcagcttggttgtgagcttctttggaggaatgaaaaatatcagaagaagtaaaggttaaaccattgaca |
614 |
Q |
| |
|
|||| ||| ||||||| | ||||||||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||| |||||| | |||||||||| |
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| T |
35950545 |
aggagaagtaaagttgcggaaagctttcatagcagcttggttttgagcttctttggcggaattgaaagcatcagaagaagcaaaggtgacaccattgaca |
35950446 |
T |
|
| Q |
615 |
aagacagagcccttaaaacttggattgtgt |
644 |
Q |
| |
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|||||| | ||||| ||||| |||||| |
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| T |
35950445 |
tgaacagaggcattaaagcttggcttgtgt |
35950416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 35951314 - 35951238
Alignment:
| Q |
8 |
gtaacctgtgaatttgatgtaacctagtagttcctataatcaaattgttttccttatcctccagtcattgctaggcaga |
86 |
Q |
| |
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|||||||||||| ||||||||||||| | |||||||||||| |||||||||||| |||| ||||||||||||||||| |
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| T |
35951314 |
gtaacctgtgaagttgatgtaacctactttttcctataatcatattgttttccttgtcct--agtcattgctaggcaga |
35951238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 35968424 - 35968342
Alignment:
| Q |
24 |
atgtaacctagtagttcctataatcaaattgttttccttatcctccagtcattgctaggcagagtagtactaaaggaaaaata |
106 |
Q |
| |
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|||||||||| ||||||||||| ||| ||||||||||||||||| ||||| ||||||||| | |||||||||| | |||||| |
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| T |
35968424 |
atgtaacctaatagttcctatattcatattgttttccttatccttaagtcactgctaggcataatagtactaaaaggaaaata |
35968342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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