View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4943-Insertion-3 (Length: 971)
Name: NF4943-Insertion-3
Description: NF4943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4943-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 582; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 245 - 952
Target Start/End: Complemental strand, 34952349 - 34951643
Alignment:
| Q |
245 |
caaaagcaaactcaacatatttcattgataatcaccgattgaatttcagatggagtgtatcataaacttgatgactagcgtatcctaaagaaacttatca |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34952349 |
caaaagcaaactcaacatatttcattgataatcaccgattgaatttcagatggagtgtatcataaacttgatgactagcgtatcctaaagaaacttatca |
34952250 |
T |
|
| Q |
345 |
taatgtgaaattatagcattaaactcaaggttgagagttaagtatactgaatatgtcattcacaattgatttacaatcaagttcaatatacacattagta |
444 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34952249 |
taatgtgaaattatagcatcaaactcaagattgagagttaagtatactgaatatgtcattcacaattgatttacaatcaagttcaatatacacattagta |
34952150 |
T |
|
| Q |
445 |
atgttcagcttagcatgctaaattgtagcttttttaatacccaagcttcagcttcttgtggcggtggaatgccataaagtattggcacagataaattcac |
544 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34952149 |
atgttcagtttagcaagctaaattgtagcttttttaatacccaagcttcagcttcttgtggcggtagaatgccataaagtattggcacagataaattcac |
34952050 |
T |
|
| Q |
545 |
tttcatatccgtgccagaaaatcttgacacggatatgccatacctactccgaaccatccttggtcattgaaannnnnnnacattcacattgtatttcagg |
644 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34952049 |
tttcatatccgttccagaaagtcttgacacggatatgccatacctactccaaaccatccttggtcattgaaaaattgttgcattcacattgtatttcagg |
34951950 |
T |
|
| Q |
645 |
tttcatcctaaacccgcaacttattcggcctgcggagggaacatttgtcgcgatcatggacacaccacaatattatcctaaaacttatcattttgacgat |
744 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
34951949 |
tttcatcctaaacccgcaacttattcggcctgc-gaaggaacatttgtcgcgatcatggacacacaacaatgttatcctaaaacttatcattttgacgat |
34951851 |
T |
|
| Q |
745 |
gccaaatgcaccgcatcgcaaataaggattaaaaatatgcgttctagacaattcaattctaatgtattctcgcaaggtcaaaatttgaggttgcggaatt |
844 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34951850 |
gccaaatgcaccacatcgcaaataaggattaaaaatatgtgttctagacaattcaattctaatgtattctcgcaaggtcaaaa-ttgaggttgcggaatt |
34951752 |
T |
|
| Q |
845 |
ccagcaaagtcattttctatatttggcagaatagtttctcaatttcaggaaat--aaaaattaggtgtatacggcaatcttagtggaggtgggaagtttt |
942 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
34951751 |
ccagcaaagtcattttctatatttggcagaatagtttctcaatttcagaaatttgaaaaattaggtgtatacggcaatc-tagtggaggtgggagatttt |
34951653 |
T |
|
| Q |
943 |
tcaggatctc |
952 |
Q |
| |
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|||||||||| |
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| T |
34951652 |
tcaggatctc |
34951643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 34952599 - 34952379
Alignment:
| Q |
7 |
ggatacaattgtgaactacagttacatccagagacaaattgtgaaaacagatggattggatttgttggaaaatggagtgatgagggtaagatcattctca |
106 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34952599 |
ggatacagttgtgaactacagttgcatccagagacaaattgtgaaaacaaatggattggatttgttggaaaatggagtgatgagggtaagatcattctca |
34952500 |
T |
|
| Q |
107 |
tacttattatgttgtttggaaggcttaaaaaattcaatatggatggaggcaaagcatggaagcttcattgattcatcatcaatatcaattctacaccaac |
206 |
Q |
| |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34952499 |
tatttgttatgttgtttggaaggcttaaaaaattcaatatggatggaggcaaagcatggaagcttcattgattcatgatcaatatcaattctacaccaac |
34952400 |
T |
|
| Q |
207 |
ttcaatttcacacattctcta |
227 |
Q |
| |
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||||||||||||||||||||| |
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| T |
34952399 |
ttcaatttcacacattctcta |
34952379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 7 - 189
Target Start/End: Complemental strand, 34970454 - 34970272
Alignment:
| Q |
7 |
ggatacaattgtgaactacagttacatccagagacaaattgtgaaaacagatggattggatttgttggaaaatggagtgatgagggtaagatcattctca |
106 |
Q |
| |
|
||||||| |||||||| ||| ||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34970454 |
ggatacagttgtgaacgacaattacatctagagataaattgtgaaaacaaatggattggatttgttgggaaatggagtgatgagggtaagatcattctca |
34970355 |
T |
|
| Q |
107 |
tacttattatgttgtttggaaggcttaaaaaattcaatatggatggaggcaaagcatggaagcttcattgattcatcatcaat |
189 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||||| |
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| T |
34970354 |
tacttattatgttgtttggaaggcttaaaaaattcaacatggatggaggcaagccatggaaacttctctgattcatcatcaat |
34970272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 35029751 - 35029615
Alignment:
| Q |
7 |
ggatacaattgtgaactacagttacatccagagacaaattgtgaaaacagatggattggatttgttggaaaatggagtgatgagggtaagatcattctca |
106 |
Q |
| |
|
||||||| |||||||| |||||| |||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35029751 |
ggatacagttgtgaacgacagttgcatcgagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgatgagggtaagatcattctta |
35029652 |
T |
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| Q |
107 |
tacttattatgttgtttggaaggcttaaaaaattcaa |
143 |
Q |
| |
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||||| |||||||| ||||||| || || |||||||| |
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| T |
35029651 |
tacttgttatgttgcttggaagactcaagaaattcaa |
35029615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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