View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4943-Insertion-4 (Length: 683)
Name: NF4943-Insertion-4
Description: NF4943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4943-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 8 - 580
Target Start/End: Original strand, 13019463 - 13020035
Alignment:
| Q |
8 |
agttcaatctctccggtttaaaagtagtagtaactactcctgcttttcccaacgacagacttacgttgggaaaagtacaaattacaatgttttcaaaatc |
107 |
Q |
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| T |
13019463 |
agttcaatctctccggtttaaaagtagtagtaactactcctgttttttccaacgacagagtgtcgttgggaaaagtacaaataacaatgttttcaaaatc |
13019562 |
T |
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| Q |
108 |
gaactgcagagactgttctgcagttcgaagatttttcaaagaaagaagattgaaattcatcgaaatcaacattgatgtatatacagagagagaaaaagag |
207 |
Q |
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| T |
13019563 |
gaactgcagagactgttctgcagttcgaagatttttcaaagaaagacgattgaaattcatcgaaatcaacattgatgtgtatacagagagagaaaaagag |
13019662 |
T |
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| Q |
208 |
ctgaaggaaagaactggaaattcaaattcaactgttccaatgattttcttcaacgacaagctaatcggtggattagtggaattaaacacgatgaggaaga |
307 |
Q |
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| T |
13019663 |
ctgaaggaaagaactggaaattcaaattcaactgttccaatgattttcttcaacgacaagctaatcggaggattagtggaattaaacgcgatgaggaaga |
13019762 |
T |
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| Q |
308 |
acgaaggcggtgaattggagaagaaactgatcgaaattgcgaatggaaaattttctggtgatattccgttggcaccggagtatggatttgatgagatggt |
407 |
Q |
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| T |
13019763 |
acgaaggcggtgaattggagaagaaactgatcgaaattgcgaatggaaaatattccggtgatattccggtggcaccggagtatggatttgatgagatggt |
13019862 |
T |
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| Q |
408 |
ggagatggagaaggaggatgagatagtgaaggtagtgagagtgttgagacagagattaccgattcaagataggttgatgaagatgaagattgtgaggaat |
507 |
Q |
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| T |
13019863 |
ggagatggagaaggaggatgagatagtgaaggtagtgagagtattgagacagagattaccgattcaagatcggttgatgaagatgaagattgtgaggaat |
13019962 |
T |
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| Q |
508 |
tgttttgatggaaatgaattggttcagcttcttgtgagaaaccatggttatgttcatcataaggtgtgttctg |
580 |
Q |
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| T |
13019963 |
tgttttgatggaaatgaattggttcagcttcttgtgagaaaccatggttatgttcataataaggtgtgttctg |
13020035 |
T |
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