View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4943-Insertion-5 (Length: 464)
Name: NF4943-Insertion-5
Description: NF4943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4943-Insertion-5 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 8 - 464
Target Start/End: Original strand, 45729565 - 45730021
Alignment:
| Q |
8 |
tttttcgcttttcttattgtgaaagagaaatttacagcttttactgtaaacgccattgttttgcttacggttggagctggtgttttggctatgcatacga |
107 |
Q |
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| T |
45729565 |
tttttcgcttttcttattgtgaaagagaaatttacagcttttactgtaaacgccgttgttttgcttacggttggagctggtgttttggctatgcatacga |
45729664 |
T |
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| Q |
108 |
gtagtgatcgtcctgctggtgtttctgcaaaacaatattggattagtttttcaaccacggttgctgcttctgcattgtatggatttattttgccttcggt |
207 |
Q |
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| T |
45729665 |
gtagtgatcgtcctgctggtgtttctgcaaaacaatattggattagtttttcaaccacggttgctgcttctgcattgtatggatttattttgccttcggt |
45729764 |
T |
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| Q |
208 |
tgagttggtttataagaagattaaacaacccgtcacttattcttttgttatggaatttcagttcgttacgtgcatgtttgccactctcttctgtgccata |
307 |
Q |
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| T |
45729765 |
tgagttggtttataagaagattaaacaacccgtcacttattcttttgttatggaatttcagttcgttacgtgcatgtttgccactctcttctgtgccata |
45729864 |
T |
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| Q |
308 |
ggcatgattgcaaacaatgactttaaggtaagattgtgttaattaaggtagtgtttttgataaacaaattacttactttgcagtttatagcttatagttt |
407 |
Q |
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| T |
45729865 |
ggcatgattgcaaacaatgactttaaggtaagattgtgttaattaaggtagtgtttttgataaacaaattacttactttgcagtttatagcttatagttt |
45729964 |
T |
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| Q |
408 |
gagttacttttataaaaagttgttgttttcgtacaagttttaagctattttcatata |
464 |
Q |
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| T |
45729965 |
gagttacttttataaaaagttgttgttttcgtacaagttttaagctattttcatata |
45730021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 342
Target Start/End: Original strand, 45725376 - 45725710
Alignment:
| Q |
8 |
tttttcgcttttcttattgtgaaagagaaatttacagcttttactgtaaacgccattgttttgcttacggttggagctggtgttttggctatgcatacga |
107 |
Q |
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| T |
45725376 |
tttttcgcttttcttcttgtgaaacagaaatttacagcatttaccgtaaacgccgtttttttgcttactgttggtgctggtgttttggctatgcatacga |
45725475 |
T |
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| Q |
108 |
gtagtgatcgtcctgctggtgtttctgcaaaacaatattggattagtttttcaaccacggttgctgcttctgcattgtatggatttattttgccttcggt |
207 |
Q |
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| T |
45725476 |
gtagtgatcgtcctgctggtgtttctgcaaaacaatatgcgattggtttttcaaccacggttgctgcatctgcattgtatggatttgttttgcctgcggt |
45725575 |
T |
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| Q |
208 |
tgagttggtttataagaagattaaacaacccgtcacttattcttttgttatggaatttcagttcgttacgtgcatgtttgccactctcttctgtgccata |
307 |
Q |
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| T |
45725576 |
tgagttggtttataagaagattaaacaacccatcacttattctcttgttatggaatttcagttcgttatgtgcatgtttgccactatcttctgtaccata |
45725675 |
T |
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| Q |
308 |
ggcatgattgcaaacaatgactttaaggtaagatt |
342 |
Q |
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| T |
45725676 |
ggcatgattataaacaatgactttaaggtaagatt |
45725710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 424
Target Start/End: Original strand, 45725723 - 45725768
Alignment:
| Q |
379 |
cttactttgcagtttatagcttatagtttgagttacttttataaaa |
424 |
Q |
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| T |
45725723 |
cttattttgcagtttatagcttatagtttgcgttacttttataaaa |
45725768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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