View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4943_high_2 (Length: 480)
Name: NF4943_high_2
Description: NF4943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4943_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 45729569 - 45729121
Alignment:
| Q |
18 |
aaaaatgcagtgaaaccaagctgagatgctattattaaggcagaagtggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccgg |
117 |
Q |
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| T |
45729569 |
aaaaacgcagtgaaaccaagctgagatgctattattaaggcagaagtggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccgg |
45729470 |
T |
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| Q |
118 |
tgaggattccgatgaaggcagctgcgaagaaaataggaggtttcatggagattatatttagtttttctggggcgatggagatggttgtcgatggtggagg |
217 |
Q |
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| T |
45729469 |
tgaggattccgatgaaggcagctgcgaagaaaataggaggtttcatggagattatatttagtttttctggggcgatggagatggttgtcaatggtggagg |
45729370 |
T |
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| Q |
218 |
atgggggtggagacggtggcgtttgatgtatgagattgcgaggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgt |
317 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45729369 |
atggtggtggagacggtggcgtttgatgtatgagattgcgaggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgt |
45729270 |
T |
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| Q |
318 |
tggccgccgtggatgaaatagagacgcattatgaggggagcactgcaggtacctagggataatatgagacaatttactacgagaaggaatctcttcannn |
417 |
Q |
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| T |
45729269 |
tggccgccgtggatgaaatagagacgcattatgaggggagcactgcaggtacctagggataatatgagacaatttactacgagaaggaatctcttcattt |
45729170 |
T |
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| Q |
418 |
nnnnctctgcaacttgttttttaccatcttccatgtgtgtgttcatctc |
466 |
Q |
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| T |
45729169 |
ttttctctgcaacttgttttttaccatcttccatgtgtgtgttcttctc |
45729121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 45725380 - 45724991
Alignment:
| Q |
18 |
aaaaatgcagtgaaaccaagctgagatgctattattaaggcagaagtggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccgg |
117 |
Q |
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||||| || ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| ||||||| |||||||| |||| |
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| T |
45725380 |
aaaaacgcggtgaaaccaagctgagatgctataattaaggaagaagtggaaaccggaagccgagcaacgccatatgcgtagagataatcgtcaagaccgg |
45725281 |
T |
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| Q |
118 |
tgaggattccgatgaaggcagctgcgaagaaaataggaggtttcatggagattatatttagtttttctggggcgatggagatggttgtcgatggtggagg |
217 |
Q |
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|||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| | |||||| ||| |
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| T |
45725280 |
tgaggattccgacaaaggcggctgcaaagaaaataggtggtttcatggagattatattttgtttttctgaggcgatggagatggtgttggatggtaaagg |
45725181 |
T |
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| Q |
218 |
atgggggtggagacggtggcgtttgatgtatgagattgcgaggggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgt |
317 |
Q |
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| | || || ||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| |
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| T |
45725180 |
tttgtggcggtgacggaaacgttggatgtatgagattgtgaggggaatgagcatcaaggggaaaccggcagtttccaggcaggcggagagccagacacgt |
45725081 |
T |
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| Q |
318 |
tggccgccgtggatgaaatagagacgcattatgaggggagcactgcaggtacctagggataatatgagacaatttactacgagaaggaat |
407 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||| | || ||||||||| |||||| ||||||||||||| ||||||||| |
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| T |
45725080 |
tggccgccgtggatgaaatagagacgcattattaggggaccaccggagttacctagggctaatatcagacaatttactatcagaaggaat |
45724991 |
T |
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