View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4943_high_4 (Length: 384)
Name: NF4943_high_4
Description: NF4943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4943_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 28274058 - 28274193
Alignment:
| Q |
18 |
actacccacttctactttaaaggatacaatagatgcttataagaagcatgttgacgatgctctagaattttgttgcatcatgctagcaaccatgaactat |
117 |
Q |
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| T |
28274058 |
actacccacttctactttaaaggatgcaagagatgcttataagaagcatgttgacgacgctctagaattttgttgcatcatgctagcaaccatgaactat |
28274157 |
T |
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| Q |
118 |
gagattcagaagcaacacatgtgacgcctcaaaccc |
153 |
Q |
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| T |
28274158 |
gagattcagaagcaacacatgtgacgcctcaaaccc |
28274193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 28258477 - 28258600
Alignment:
| Q |
30 |
tactttaaaggatacaatagatgcttataagaagcatgttgacgatgctctagaattttgttgcatcatgctagcaaccatgaactatgagattcagaag |
129 |
Q |
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| T |
28258477 |
tactttaaaggatgcaagacatgcttataagaagcatgttgacgatgctctagaatttagttgtatcatgctagcaactatgaactataagattcagaag |
28258576 |
T |
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| Q |
130 |
caacacatgtgacgcctcaaaccc |
153 |
Q |
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| T |
28258577 |
caacacatgtgacacctcaaaccc |
28258600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 239 - 339
Target Start/End: Original strand, 28275243 - 28275343
Alignment:
| Q |
239 |
ggtaaagcatatcacgacccatttacataatcttcgattgaagatttcaaatttcattataataaattttggcttaataactgatgacaggtcatcttac |
338 |
Q |
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| T |
28275243 |
ggtaaaggatatcacgacccatttacataatcttcgattgaagatttcaaatttcattataataaattttggcttaataactgatgacaaatcatcttac |
28275342 |
T |
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| Q |
339 |
g |
339 |
Q |
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| T |
28275343 |
g |
28275343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 247 - 314
Target Start/End: Original strand, 28258688 - 28258755
Alignment:
| Q |
247 |
atatcacgacccatttacataatcttcgattgaagatttcaaatttcattataataaattttggctta |
314 |
Q |
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| T |
28258688 |
atatcacggcccatttacataatcttcgattgaagatttcaaatttcattataataaattttggctta |
28258755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 315
Target Start/End: Original strand, 12374076 - 12374144
Alignment:
| Q |
247 |
atatcacgacccatttacataatcttcgattgaagatttcaaatttcattataataaattttggcttaa |
315 |
Q |
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| T |
12374076 |
atatcacgaatcatttacataatcctcaatttaatatttcaaacttcattataataaattttggcttaa |
12374144 |
T |
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