View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4943_high_5 (Length: 323)

Name: NF4943_high_5
Description: NF4943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4943_high_5
NF4943_high_5
[»] chr7 (22 HSPs)
chr7 (210-316)||(5811161-5811268)
chr7 (207-316)||(46475110-46475221)
chr7 (211-308)||(13108241-13108339)
chr7 (210-316)||(23980217-23980324)
chr7 (214-316)||(21807324-21807427)
chr7 (211-309)||(42220962-42221061)
chr7 (211-316)||(45782658-45782765)
chr7 (234-308)||(15020373-15020447)
chr7 (212-316)||(36346564-36346669)
chr7 (209-316)||(34828151-34828259)
chr7 (211-316)||(28307493-28307600)
chr7 (210-316)||(31148376-31148483)
chr7 (210-288)||(42950034-42950113)
chr7 (211-317)||(26972201-26972309)
chr7 (209-269)||(384573-384635)
chr7 (211-316)||(36957515-36957620)
chr7 (273-316)||(20086690-20086733)
chr7 (211-316)||(34108512-34108619)
chr7 (212-316)||(7699882-7699988)
chr7 (212-316)||(7700080-7700186)
chr7 (212-316)||(7700278-7700384)
chr7 (212-316)||(7700476-7700582)
[»] chr6 (4 HSPs)
chr6 (213-316)||(14023020-14023124)
chr6 (211-316)||(24208530-24208636)
chr6 (211-293)||(3118045-3118129)
chr6 (207-314)||(15345654-15345762)
[»] chr2 (11 HSPs)
chr2 (210-316)||(6376236-6376343)
chr2 (205-293)||(16089930-16090019)
chr2 (207-316)||(36315647-36315758)
chr2 (209-304)||(37498859-37498956)
chr2 (210-316)||(44958199-44958307)
chr2 (215-316)||(3830900-3831002)
chr2 (211-316)||(33732655-33732761)
chr2 (272-316)||(24137153-24137197)
chr2 (212-312)||(41188859-41188961)
chr2 (212-316)||(37914236-37914341)
chr2 (239-316)||(14573081-14573159)
[»] chr3 (12 HSPs)
chr3 (209-316)||(39467098-39467206)
chr3 (210-316)||(51339781-51339888)
chr3 (209-310)||(29472901-29473003)
chr3 (212-316)||(21559647-21559753)
chr3 (212-316)||(46111943-46112049)
chr3 (211-309)||(30735494-30735594)
chr3 (212-296)||(38231398-38231484)
chr3 (212-316)||(39072278-39072378)
chr3 (213-316)||(22894766-22894870)
chr3 (214-316)||(36749492-36749596)
chr3 (211-316)||(34749896-34750003)
chr3 (212-316)||(36370337-36370443)
[»] chr8 (13 HSPs)
chr8 (212-316)||(33726097-33726203)
chr8 (211-316)||(18184639-18184745)
chr8 (210-309)||(12665438-12665539)
chr8 (210-316)||(30432425-30432532)
chr8 (210-316)||(36189302-36189408)
chr8 (210-316)||(31318891-31318999)
chr8 (213-306)||(38845023-38845118)
chr8 (212-316)||(10203750-10203856)
chr8 (212-316)||(42162684-42162790)
chr8 (51-108)||(26295843-26295900)
chr8 (51-108)||(26309100-26309157)
chr8 (51-108)||(26343161-26343218)
chr8 (233-316)||(35849474-35849557)
[»] chr1 (6 HSPs)
chr1 (214-316)||(19258674-19258777)
chr1 (211-314)||(28647441-28647545)
chr1 (211-312)||(34307136-34307239)
chr1 (211-316)||(2509110-2509217)
chr1 (214-316)||(39249864-39249968)
chr1 (211-316)||(46901733-46901840)
[»] chr4 (12 HSPs)
chr4 (211-316)||(44275792-44275898)
chr4 (212-316)||(21390955-21391060)
chr4 (231-297)||(52191220-52191286)
chr4 (209-316)||(6112716-6112824)
chr4 (211-316)||(7217851-7217958)
chr4 (212-316)||(46192445-46192551)
chr4 (214-309)||(35545005-35545102)
chr4 (211-317)||(28093094-28093202)
chr4 (212-302)||(49243915-49244006)
chr4 (212-316)||(3672360-3672466)
chr4 (211-316)||(45829256-45829362)
chr4 (273-316)||(51038849-51038893)
[»] chr5 (13 HSPs)
chr5 (211-314)||(31800646-31800750)
chr5 (213-297)||(4300544-4300629)
chr5 (212-316)||(1815619-1815721)
chr5 (212-316)||(2237362-2237468)
chr5 (212-316)||(39371013-39371119)
chr5 (272-316)||(17225403-17225447)
chr5 (210-293)||(27553372-27553455)
chr5 (211-316)||(14831630-14831737)
chr5 (211-316)||(40887940-40888047)
chr5 (214-302)||(19124474-19124563)
chr5 (212-314)||(13347216-13347320)
chr5 (211-316)||(42683685-42683792)
chr5 (212-309)||(41003850-41003948)
[»] scaffold0043 (1 HSPs)
scaffold0043 (210-286)||(87160-87237)
[»] scaffold0062 (1 HSPs)
scaffold0062 (212-316)||(6804-6910)
[»] scaffold0438 (1 HSPs)
scaffold0438 (51-108)||(13322-13379)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 210 - 316
Target Start/End: Original strand, 5811161 - 5811268
Alignment:
Q  210 taggaaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  5811161 taggaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt 5811260  T
Q  309 tcatctct 316  Q
    ||||||||    
T  5811261 tcatctct 5811268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 207 - 316
Target Start/End: Complemental strand, 46475221 - 46475110
Alignment:
Q  207 atataggaaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgtta-ggagtattttagtaatttcacatcacatcctcaccc 304  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| |||||| || |||||||||||||||||||||||||| ||||||    
T  46475221 atataggaaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtcaccc 46475122  T
Q  305 cttttcatctct 316  Q
    ||||||||||||    
T  46475121 cttttcatctct 46475110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 13108339 - 13108241
Alignment:
Q  211 aggaaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  13108339 aggaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt 13108241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 210 - 316
Target Start/End: Complemental strand, 23980324 - 23980217
Alignment:
Q  210 taggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    ||||||||||||||||||||| |||||||||||||  | ||||||||| ||||  ||||||  |||||||||||||||||||||||||||||||||||||    
T  23980324 taggaaaaagataggtagacatccttttttatacattttccatgtacatctcatatgttagaggtattttagtaatttcacatcacatcctcaccccttt 23980225  T
Q  309 tcatctct 316  Q
    ||||||||    
T  23980224 tcatctct 23980217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 21807324 - 21807427
Alignment:
Q  214 aaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttttcat 312  Q
    |||||||||||| |||| |||||||||||||| || ||| |||||| ||||||||||| |||||||||||||||||||| ||||| ||| || |||||||    
T  21807324 aaaaagataggttgacaaccttttttatacacttctcatatacaccccacgtgttaggggtattttagtaatttcacataacatcatcatccattttcat 21807423  T
Q  313 ctct 316  Q
    ||||    
T  21807424 ctct 21807427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 42220962 - 42221061
Alignment:
Q  211 aggaaaaagataggtagacaccttttttatacacctcccatgtacacctcacgtgttaggagta-ttttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||||||||||||||||| ||||||| |  ||||||||  || |||||||| ||| |||||||||||| |||||| ||| |||||||||||    
T  42220962 aggaaaaagataggtagacacctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacccctttt 42221061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 45782658 - 45782765
Alignment:
Q  211 aggaaaaagataggtagacacc-ttttttatacacctcccatgtacac-ctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    |||||||||||||||||||||| |||||||||||| |   |||||||| | || |||||||| ||||||||||||||| |||||| ||| |||||| |||    
T  45782658 aggaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttt 45782757  T
Q  309 tcatctct 316  Q
    ||||||||    
T  45782758 tcatctct 45782765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 15020447 - 15020373
Alignment:
Q  234 tttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    |||||||||||||||||| |||| |||| ||||||||  ||||||||||||||||||||| ||| ||||||||||    
T  15020447 tttttatacacctcccatatacatctcatgtgttagggatattttagtaatttcacatcatatcttcaccccttt 15020373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 36346564 - 36346669
Alignment:
Q  212 ggaaaaagataggtagacacctttttt-atacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||||||||||| ||||| |||||||||  ||||||||| ||| |||||||| ||||||||||||||| |||||| ||| ||| || ||||    
T  36346564 ggaaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatca-ccttttt 36346662  T
Q  310 catctct 316  Q
    |||||||    
T  36346663 catctct 36346669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 316
Target Start/End: Complemental strand, 34828259 - 34828151
Alignment:
Q  209 ataggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 307  Q
    |||||||||||||||||||||| ||||||| ||||||| |  ||| ||||| ||  ||||||| ||||||||||||||| |||||| ||| ||| | |||    
T  34828259 ataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcactt 34828160  T
Q  308 ttcatctct 316  Q
    |||||||||    
T  34828159 ttcatctct 34828151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 28307493 - 28307600
Alignment:
Q  211 aggaaaaagataggtagacacctttttt-atacacctcccatgtacacctc-acgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    |||||||||||||||||||| ||||||| |||||||||  ||||||||| | |  ||||| | ||||||||||||||| |||||| ||| |||||| |||    
T  28307493 aggaaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcaccctttt 28307592  T
Q  309 tcatctct 316  Q
    ||||||||    
T  28307593 tcatctct 28307600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 316
Target Start/End: Complemental strand, 31148483 - 31148376
Alignment:
Q  210 taggaaaaagataggtagacac-cttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    |||||||||||||||||||||| |||||| |||||||||  ||  ||||| ||  |||||||  |||||||||||||| |||||| ||| |||||| |||    
T  31148483 taggaaaaagataggtagacactctttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcacccattt 31148384  T
Q  309 tcatctct 316  Q
    ||||||||    
T  31148383 tcatctct 31148376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 42950034 - 42950113
Alignment:
Q  210 taggaaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttca 288  Q
    ||||||||||||||||||||||| ||||||||||||||  |||||||||| || || | ||| |||||||||||||||||    
T  42950034 taggaaaaagataggtagacacccttttttatacacctagcatgtacaccccatgtttcaggggtattttagtaatttca 42950113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 317
Target Start/End: Original strand, 26972201 - 26972309
Alignment:
Q  211 aggaaaaagataggtagacacctttttt-atacacctcccatgtacacctc-acgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    |||||||||||||||||||||| ||||| |||||| ||  ||||||||| | | || ||||| |||||| |||||||| |||||| ||| |||||| |||    
T  26972201 aggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 26972300  T
Q  309 tcatctctc 317  Q
    |||||||||    
T  26972301 tcatctctc 26972309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 384635 - 384573
Alignment:
Q  209 ataggaaaaagataggtagaca-ccttttt-tatacacctcccatgtacacctcacgtgttag 269  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||| |||| |||||||    
T  384635 ataggaaaaagataggtagacatcctttttctatacacctcccatgtacatctcatgtgttag 384573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 36957620 - 36957515
Alignment:
Q  211 aggaaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    |||||||||||||||||||||  ||||||||||||||  ||| |||||| || ||||| || ||||||||||||||| |||| ||||  ||| || ||||    
T  36957620 aggaaaaagataggtagacacaattttttatacacctttcatatacacc-catgtgttgggggtattttagtaattttacattacattatcatccatttt 36957522  T
Q  310 catctct 316  Q
    |||||||    
T  36957521 catctct 36957515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 316
Target Start/End: Original strand, 20086690 - 20086733
Alignment:
Q  273 tattttagtaatttcacatcacatcctcaccccttttcatctct 316  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  20086690 tattttagtaatttcacatcacatcatcacccctttttatctct 20086733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 34108619 - 34108512
Alignment:
Q  211 aggaaaaagataggtagacacctttttt-atacacctcccatgtacac-ctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    |||||||||||||||| ||||| ||||| |||||| ||  |||||||| | || || ||||| |||||| |||||||| |||||| ||| |||||| |||    
T  34108619 aggaaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 34108520  T
Q  309 tcatctct 316  Q
    ||||||||    
T  34108519 tcatctct 34108512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 7699882 - 7699988
Alignment:
Q  212 ggaaaaagataggtagaca-ccttttttatacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||||| ||| ||||||| |||||||||  || |||||| ||| |||||| | ||||||||||||||| | |||| ||| ||| || ||||    
T  7699882 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7699981  T
Q  310 catctct 316  Q
     ||||||    
T  7699982 tatctct 7699988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 7700080 - 7700186
Alignment:
Q  212 ggaaaaagataggtagaca-ccttttttatacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||||| ||| ||||||| |||||||||  || |||||| ||| |||||| | ||||||||||||||| | |||| ||| ||| || ||||    
T  7700080 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700179  T
Q  310 catctct 316  Q
     ||||||    
T  7700180 tatctct 7700186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 7700278 - 7700384
Alignment:
Q  212 ggaaaaagataggtagaca-ccttttttatacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||||| ||| ||||||| |||||||||  || |||||| ||| |||||| | ||||||||||||||| | |||| ||| ||| || ||||    
T  7700278 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700377  T
Q  310 catctct 316  Q
     ||||||    
T  7700378 tatctct 7700384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 7700476 - 7700582
Alignment:
Q  212 ggaaaaagataggtagaca-ccttttttatacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||||| ||| ||||||| |||||||||  || |||||| ||| |||||| | ||||||||||||||| | |||| ||| ||| || ||||    
T  7700476 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700575  T
Q  310 catctct 316  Q
     ||||||    
T  7700576 tatctct 7700582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 213 - 316
Target Start/End: Complemental strand, 14023124 - 14023020
Alignment:
Q  213 gaaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttttca 311  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| |||    
T  14023124 gaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtca 14023025  T
Q  312 tctct 316  Q
    |||||    
T  14023024 tctct 14023020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 24208636 - 24208530
Alignment:
Q  211 aggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    |||||||||||||||||||| ||||||||||||||||| ||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  24208636 aggaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcacccttttt 24208537  T
Q  310 catctct 316  Q
    |||||||    
T  24208536 catctct 24208530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 3118045 - 3118129
Alignment:
Q  211 aggaaaaagataggtagaca-ccttttttatacacctcccatgtacac-ctcacgtgttaggagtattttagtaatttcacatca 293  Q
    |||||||||||||||||||| ||||||| ||||| |||  |||||||| | || || ||||| ||||||||||||||| ||||||    
T  3118045 aggaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatca 3118129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 314
Target Start/End: Original strand, 15345654 - 15345762
Alignment:
Q  207 atataggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccc 305  Q
    |||||||||||| ||||||||||| ||||||| |||||| ||  |||||||||  | || ||||| | |||| |||||||| | |||| ||| |||||      
T  15345654 atataggaaaaaaataggtagacatcttttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcacctt 15345753  T
Q  306 ttttcatct 314  Q
    |||||||||    
T  15345754 ttttcatct 15345762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 210 - 316
Target Start/End: Original strand, 6376236 - 6376343
Alignment:
Q  210 taggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||  ||||||||||||||||||||||||||||||||| |||    
T  6376236 taggaaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattt 6376335  T
Q  309 tcatctct 316  Q
    ||||||||    
T  6376336 tcatctct 6376343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 16090019 - 16089930
Alignment:
Q  205 tcatataggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatca 293  Q
    |||| ||||||||||||||||||||||||||||| |||||||||  ||||||||| || |||||||| ||||||||||||||| ||||||    
T  16090019 tcatttaggaaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatca 16089930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 207 - 316
Target Start/End: Complemental strand, 36315758 - 36315647
Alignment:
Q  207 atataggaaaaagataggtagaca-cctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 304  Q
    |||||||||||||||||||||||| |||||||| |||||||||  |||||||||||| |||| ||| |||||||| | ||||||||||||||  |||||     
T  36315758 atataggaaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacct 36315659  T
Q  305 cttttcatctct 316  Q
    ||||| ||||||    
T  36315658 ctttttatctct 36315647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 37498859 - 37498956
Alignment:
Q  209 ataggaaaaagataggtagaca-ccttttttatacacctcccatgtaca-cctcacgtgttaggagtattttagtaatttcacatcacatcctcaccc 304  Q
    |||||||||||||||||||||| |||||||||||||||||  ||||||| || || |||||||| ||||||||||||||| |||||| ||| ||||||    
T  37498859 ataggaaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccc 37498956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 316
Target Start/End: Complemental strand, 44958307 - 44958199
Alignment:
Q  210 taggaaaaagataggtagaca-ccttttttatacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 307  Q
    ||||||||||||||||||||| ||||||| |||||||||  ||||| ||| ||| |||||||| ||||||||||||||| |||||| ||| |||||| ||    
T  44958307 taggaaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttt 44958208  T
Q  308 ttcatctct 316  Q
    || ||||||    
T  44958207 tttatctct 44958199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 215 - 316
Target Start/End: Original strand, 3830900 - 3831002
Alignment:
Q  215 aaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttttcatc 313  Q
    |||||||||||||||||| ||||| |||||||||  ||||||||| || |||||||| |||| |||||||||| |||||| ||  ||||| |||||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatc 3830999  T
Q  314 tct 316  Q
    |||    
T  3831000 tct 3831002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 33732761 - 33732655
Alignment:
Q  211 aggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    |||||||||||||||||||||| ||||| |||||||||  ||||||||| ||  | ||||| ||||||||||||||| |||||| |||  ||||| ||||    
T  33732761 aggaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccacccttttt 33732662  T
Q  310 catctct 316  Q
    |||||||    
T  33732661 catctct 33732655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 24137153 - 24137197
Alignment:
Q  272 gtattttagtaatttcacatcacatcctcaccccttttcatctct 316  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  24137153 gtattttagtaatttcacatcacatcctcatcccttttcatctct 24137197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 312
Target Start/End: Complemental strand, 41188961 - 41188859
Alignment:
Q  212 ggaaaaagataggtagacaccttttt--tatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||| ||||||| ||||  |||||||||| |||||||| | || |||| ||   |||||||||||||| |||||||||| ||| |||||||    
T  41188961 ggaaaaagataggcagacacccttttgttatacacctctcatgtacatcacatgtgtcagagatattttagtaattttacatcacatcatcatccctttt 41188862  T
Q  310 cat 312  Q
    |||    
T  41188861 cat 41188859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 37914236 - 37914341
Alignment:
Q  212 ggaaaaagataggtagacacctttttt--atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||||||||||| |||||  |||||||||  ||||||||| || ||   ||| |||||||| | ||||||||||||||  |||||||||||    
T  37914236 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccagg-gtattttaatcatttcacatcacattatcacccctttt 37914334  T
Q  310 catctct 316  Q
     ||||||    
T  37914335 tatctct 37914341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 14573159 - 14573081
Alignment:
Q  239 atacacctcccatgtacacctc-acgtgttaggagtattttagtaatttcacatcacatcctcaccccttttcatctct 316  Q
    |||||||||  ||||||||| | | |||||||| ||||||||||||||| |||||| ||| |||||| ||| |||||||    
T  14573159 atacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctct 14573081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 209 - 316
Target Start/End: Original strand, 39467098 - 39467206
Alignment:
Q  209 ataggaaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 307  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |  |||||||||||||||| ||||||||||||||||||    
T  39467098 ataggaaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcacccctt 39467197  T
Q  308 ttcatctct 316  Q
    |||||||||    
T  39467198 ttcatctct 39467206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 210 - 316
Target Start/End: Original strand, 51339781 - 51339888
Alignment:
Q  210 taggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    ||||||||||||||||||||||| ||||| |||||||||  |||||||| ||| |||||||  ||||||||||||||| |||||| ||| |||||| |||    
T  51339781 taggaaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttt 51339880  T
Q  309 tcatctct 316  Q
    ||||||||    
T  51339881 tcatctct 51339888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 209 - 310
Target Start/End: Complemental strand, 29473003 - 29472901
Alignment:
Q  209 ataggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 307  Q
    |||||||||||||||||||||| ||||||| ||||||| |  ||| ||||| || |||||||| ||||||||||||||| |||||| ||| ||| |||||    
T  29473003 ataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatccctt 29472904  T
Q  308 ttc 310  Q
    |||    
T  29472903 ttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 21559753 - 21559647
Alignment:
Q  212 ggaaaaagataggtagacacctttttt-atacacctcccatgtacacctc-acgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    |||||||||||| |||||||| ||||| |||||||||  ||||||||| | | |||||||| ||||||||||||||| |||||| ||| | |||| ||||    
T  21559753 ggaaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattacccttttt 21559654  T
Q  310 catctct 316  Q
    |||||||    
T  21559653 catctct 21559647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 46111943 - 46112049
Alignment:
Q  212 ggaaaaagataggtagacacctttttt-atacacctcccatgtaca-cctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||||||||||| ||||| ||||||||   || |||| || || || ||||| ||||||||||||||| |||||| ||| |||||| ||||    
T  46111943 ggaaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcacccttttt 46112042  T
Q  310 catctct 316  Q
    |||||||    
T  46112043 catctct 46112049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 30735494 - 30735594
Alignment:
Q  211 aggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagta-ttttagtaatttcacatcacatcctcaccccttt 308  Q
    |||||||||||||||||||| ||||||| ||||||| |  ||||||||  || |||||||| ||| |||||||||||| |||||| ||| |||||| |||    
T  30735494 aggaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcaccctttt 30735593  T
Q  309 t 309  Q
    |    
T  30735594 t 30735594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 296
Target Start/End: Complemental strand, 38231484 - 38231398
Alignment:
Q  212 ggaaaaagataggtagaca-cctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacat 296  Q
    ||||||||||||||||||| |||||||| |||||||||  ||||||||| || |||| ||| ||| |||||| ||||||||| ||||    
T  38231484 ggaaaaagataggtagacatccttttttgatacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacat 38231398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 39072278 - 39072378
Alignment:
Q  212 ggaaaaagataggtagacac-cttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttttc 310  Q
    |||||||||||||||||||| |||||||||||| ||   ||||||||| || |||| | | ||||||||||||     ||||||||| |||||| |||||    
T  39072278 ggaaaaagataggtagacacacttttttatacatctttgatgtacaccccatgtgtcaagggtattttagtaa-----catcacatcatcacccattttc 39072372  T
Q  311 atctct 316  Q
    ||||||    
T  39072373 atctct 39072378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 316
Target Start/End: Complemental strand, 22894870 - 22894766
Alignment:
Q  213 gaaaaagataggtagacaccttttttatacacctcccatgtaca-cctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttttca 311  Q
    ||||||||||| |||||||| |||| |||||| ||  ||||||| ||||| || ||||| |||||| |||||||  |||||| ||| ||| || ||||||    
T  22894870 gaaaaagatagatagacacccttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttca 22894771  T
Q  312 tctct 316  Q
    |||||    
T  22894770 tctct 22894766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 316
Target Start/End: Complemental strand, 36749596 - 36749492
Alignment:
Q  214 aaaaagataggtagacac-cttttttatacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttttca 311  Q
    |||||||||||||||||| |||||| |||||| |   ||||||||| ||| || ||||  |||||| |||||||| |||||| ||| |||||| ||||||    
T  36749596 aaaaagataggtagacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttca 36749497  T
Q  312 tctct 316  Q
    |||||    
T  36749496 tctct 36749492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 34749896 - 34750003
Alignment:
Q  211 aggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctc-acgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    |||||||||||||  ||||| ||||||| |||||| ||  ||||||||| | | || ||||| |||||| |||||||| |||||| ||| |||||| |||    
T  34749896 aggaaaaagatagccagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 34749995  T
Q  309 tcatctct 316  Q
    ||||||||    
T  34749996 tcatctct 34750003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 36370337 - 36370443
Alignment:
Q  212 ggaaaaagataggtagacac-cttttttatacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||||||| || |||||| |||||| |   || |||||| ||| || ||||| |||||| |||||||| |||||| ||| |||||| ||||    
T  36370337 ggaaaaagataggtagatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 36370436  T
Q  310 catctct 316  Q
    |||||||    
T  36370437 catctct 36370443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 33726203 - 33726097
Alignment:
Q  212 ggaaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctca-cccctttt 309  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| ||| || |||||    
T  33726203 ggaaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccactttt 33726104  T
Q  310 catctct 316  Q
    |||||||    
T  33726103 catctct 33726097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 18184745 - 18184639
Alignment:
Q  211 aggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    |||||||||||||||||||| ||||||| ||||||||   |||||||||||| |||||||| ||||||||||||||| | |||| ||| |||||||||||    
T  18184745 aggaaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcacccctttt 18184646  T
Q  310 catctct 316  Q
    |||||||    
T  18184645 catctct 18184639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 12665539 - 12665438
Alignment:
Q  210 taggaaaaagataggtagaca-ccttttttatacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 307  Q
    ||||||||||||||||||||| |||||||  ||||||||  ||||| ||| ||| |||||||| ||||||||||||||| |||||| ||| |||||| ||    
T  12665539 taggaaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttt 12665440  T
Q  308 tt 309  Q
    ||    
T  12665439 tt 12665438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 316
Target Start/End: Complemental strand, 30432532 - 30432425
Alignment:
Q  210 taggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    |||||||||||| | |||||||| ||||| |||||||||  ||||||| | ||  | ||| | ||||||||||||||| |||||| ||| ||||||||||    
T  30432532 taggaaaaagattgatagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcaccccttt 30432433  T
Q  309 tcatctct 316  Q
    ||||||||    
T  30432432 tcatctct 30432425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 316
Target Start/End: Complemental strand, 36189408 - 36189302
Alignment:
Q  210 taggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    ||||||||||||||||||||||| ||||| ||||||| |  ||||||||| ||  ||||||| |||||||| |||||| | |||| ||| |||| |||||    
T  36189408 taggaaaaagataggtagacaccctttttcatacaccacttatgtacacc-catatgttaggggtattttaataattttatatcatatcatcactccttt 36189310  T
Q  309 tcatctct 316  Q
    ||||||||    
T  36189309 tcatctct 36189302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 316
Target Start/End: Complemental strand, 31318999 - 31318891
Alignment:
Q  210 taggaaaaagataggtagacacctttttt-atacacctcccatgtacacctc-acgtgttaggagtattttagtaatttcacatcacatcctcacccctt 307  Q
    ||||||||||||||||||||| | ||||| |||||| ||  || |||||| | | || |||||||||||| |||||||| |||||| ||| |||||| ||    
T  31318999 taggaaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcacccttt 31318900  T
Q  308 ttcatctct 316  Q
    |||||||||    
T  31318899 ttcatctct 31318891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 306
Target Start/End: Original strand, 38845023 - 38845118
Alignment:
Q  213 gaaaaagataggtagacacc-ttttttatacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcacccct 306  Q
    ||||||||||| || ||||| |||||||||||||   |||||||||| | | ||||||||  ||||||||||||||| ||||||||| ||||||||    
T  38845023 gaaaaagatagataaacaccattttttatacacccttcatgtacacccttatgtgttagggttattttagtaatttctcatcacatcatcacccct 38845118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 10203856 - 10203750
Alignment:
Q  212 ggaaaaagataggtagaca-ccttttttatacacctcccatgtaca-cctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||||||||| ||||||| ||||| |||  ||||||| ||||| || |||||  |||||||||||||| | |||| |||  ||||| ||||    
T  10203856 ggaaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccacccttttt 10203757  T
Q  310 catctct 316  Q
    |||||||    
T  10203756 catctct 10203750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 42162790 - 42162684
Alignment:
Q  212 ggaaaaagataggtagacac-cttttttatacacctcccatgtacacctc-acgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    |||||||||||||||||||| |||||| |||||| |   ||||||||| | | || ||||| |||||| |||||||| |||||| ||| |||||| ||||    
T  42162790 ggaaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 42162691  T
Q  310 catctct 316  Q
    |||||||    
T  42162690 catctct 42162684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 26295900 - 26295843
Alignment:
Q  51 atgcaacacatgaatgaataaagaaacagattgttgaaagatcatagttgtagtcatg 108  Q
    |||||||| ||||||||||| ||||||||||||  ||| ||||||| |||||||||||    
T  26295900 atgcaacatatgaatgaatagagaaacagattgaagaatgatcatacttgtagtcatg 26295843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 26309157 - 26309100
Alignment:
Q  51 atgcaacacatgaatgaataaagaaacagattgttgaaagatcatagttgtagtcatg 108  Q
    |||||||| ||||||||||| ||||||||||||  ||| ||||||| |||||||||||    
T  26309157 atgcaacatatgaatgaatagagaaacagattgaagaatgatcatacttgtagtcatg 26309100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 26343218 - 26343161
Alignment:
Q  51 atgcaacacatgaatgaataaagaaacagattgttgaaagatcatagttgtagtcatg 108  Q
    |||||||| ||||||||||| ||||||||||||  ||| ||||||| |||||||||||    
T  26343218 atgcaacatatgaatgaatagagaaacagattgaagaatgatcatacttgtagtcatg 26343161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 316
Target Start/End: Original strand, 35849474 - 35849557
Alignment:
Q  233 ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttttcatctct 316  Q
    |||||||||||||||||||||| |||  | |||| ||| |  ||||| |||||||| |||||||| || |||||| ||||||||    
T  35849474 ttttttatacacctcccatgtataccatatgtgtcaggggggttttaataatttcatatcacatcatcgccccttctcatctct 35849557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 19258674 - 19258777
Alignment:
Q  214 aaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttttcat 312  Q
    ||||||||||||||||||| ||||||||||| ||| |||||||||| || ||||||||| ||||||| |||||||||||||||||  |||||||||||||    
T  19258674 aaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcat 19258773  T
Q  313 ctct 316  Q
    ||||    
T  19258774 ctct 19258777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 211 - 314
Target Start/End: Complemental strand, 28647545 - 28647441
Alignment:
Q  211 aggaaaaagataggtagacacc-ttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| | || ||||||||| ||||||| |||||||||||||||||  ||||||||||    
T  28647545 aggaaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccacccctttt 28647446  T
Q  310 catct 314  Q
    |||||    
T  28647445 catct 28647441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 211 - 312
Target Start/End: Original strand, 34307136 - 34307239
Alignment:
Q  211 aggaaaaagataggtagacacctttttt-atacacctcccatgtacac-ctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    |||||||||||||||||||||||||||| |||||||||  |||||||| | || |||||||| ||||||||||||||| |||||| ||| |||||| |||    
T  34307136 aggaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttt 34307235  T
Q  309 tcat 312  Q
    ||||    
T  34307236 tcat 34307239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 2509217 - 2509110
Alignment:
Q  211 aggaaaaagataggtagacacctttttt-atacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    ||||||||||||||||||||| |||||| |||||||||  ||||||||| ||| || |||||  |||||||||||||| |||||| |||  ||||| |||    
T  2509217 aggaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccaccctttt 2509118  T
Q  309 tcatctct 316  Q
    ||||||||    
T  2509117 tcatctct 2509110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 39249864 - 39249968
Alignment:
Q  214 aaaaagataggtagacacctttttt-atacacctcccatgtaca-cctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttttca 311  Q
    ||||||||||||||||||||||||| |||||||||  ||||||| || || || ||||| ||||||||||||||| |||| | |||  || || ||||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttca 39249963  T
Q  312 tctct 316  Q
    |||||    
T  39249964 tctct 39249968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 46901733 - 46901840
Alignment:
Q  211 aggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctc-acgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    |||||||||||||||||||| ||||||| |||||  ||  ||||||||| | | || | |||||||||| |||||||| |||||| ||| |||||| |||    
T  46901733 aggaaaaagataggtagacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcaccctttt 46901832  T
Q  309 tcatctct 316  Q
    ||||||||    
T  46901833 tcatctct 46901840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 44275898 - 44275792
Alignment:
Q  211 aggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||| |||||||| ||||| |||||||||  ||||||||| || |||||||| ||||||||||||||| |||||| ||| |||||| ||||    
T  44275898 aggaaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 44275799  T
Q  310 catctct 316  Q
     ||||||    
T  44275798 aatctct 44275792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 21390955 - 21391060
Alignment:
Q  212 ggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttttc 310  Q
    ||||||||||||||||||||| ||||| ||||||||   |||||||||||| |||||||| ||||||||||||||| |||||| ||  |||| | |||||    
T  21390955 ggaaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatatattcactcattttc 21391054  T
Q  311 atctct 316  Q
    ||||||    
T  21391055 atctct 21391060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 52191220 - 52191286
Alignment:
Q  231 ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatc 297  Q
    ||||||||||||||||| | |||||||| ||  |||||||||||||||||||||||| |||||||||    
T  52191220 ccttttttatacacctctcgtgtacaccccatatgttaggagtattttagtaatttcgcatcacatc 52191286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 316
Target Start/End: Complemental strand, 6112824 - 6112716
Alignment:
Q  209 ataggaaaaagataggtagacac-cttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctt 307  Q
    ||||||||||||||||||||||| |||||| |||||| ||  ||||||||  || || ||||| |||||| |||||||| |||||| ||| ||| || ||    
T  6112824 ataggaaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatccttt 6112725  T
Q  308 ttcatctct 316  Q
    |||||||||    
T  6112724 ttcatctct 6112716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 7217958 - 7217851
Alignment:
Q  211 aggaaaaagataggtagacacctttttt-atacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    |||||||||||||||| ||||| ||||| |||||||||  ||||||||| ||| ||||||   ||||||||||||||| |||||| ||| |||||| |||    
T  7217958 aggaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcaccctttt 7217859  T
Q  309 tcatctct 316  Q
    | ||||||    
T  7217858 ttatctct 7217851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 46192551 - 46192445
Alignment:
Q  212 ggaaaaagataggtagacacctttttt--atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||||||||||| |||||  |||||||||  ||||||||| || ||   ||| |||||||| | ||||||||||||||  |||||||||||    
T  46192551 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcacattatcacccctttt 46192452  T
Q  310 catctct 316  Q
     ||||||    
T  46192451 tatctct 46192445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 309
Target Start/End: Complemental strand, 35545102 - 35545005
Alignment:
Q  214 aaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtatttt-agtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||||||||| ||||| ||||||| |  ||||||||  || |||||||| ||||||| |||||||| |||||| ||| |||||||||||    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcacccctttt 35545005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 317
Target Start/End: Original strand, 28093094 - 28093202
Alignment:
Q  211 aggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctc-acgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    |||||||||||||||||||| ||||||| |||||| ||  ||||||||| | | || ||||| |||||| |||| ||| |||||| ||| |||||| |||    
T  28093094 aggaaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcaccctttt 28093193  T
Q  309 tcatctctc 317  Q
    |||||||||    
T  28093194 tcatctctc 28093202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 302
Target Start/End: Complemental strand, 49244006 - 49243915
Alignment:
Q  212 ggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcac 302  Q
    ||||||||||| ||||||| ||||||| |||||||||  ||||||||  || || ||||| ||||||||||||||| |||||| ||| ||||    
T  49244006 ggaaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatcac 49243915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 3672466 - 3672360
Alignment:
Q  212 ggaaaaagataggtagacacctttttt-atacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||||||| ||| ||||| |||||| ||  ||||||||| ||| || ||||| |||||| |||||||  |||||| ||| |||||| ||||    
T  3672466 ggaaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcacccttttt 3672367  T
Q  310 catctct 316  Q
    |||||||    
T  3672366 catctct 3672360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 45829256 - 45829362
Alignment:
Q  211 aggaaaaagataggtagacacctttttt--atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    |||||||||||||||||||||| |||||  ||||||||   ||||||||| ||  ||  ||| |||||||| | ||||||||||||||  ||||||||||    
T  45829256 aggaaaaagataggtagacacccttttttgatacaccttt-atgtacaccccatatgccaggggtattttaatcatttcacatcacattatcaccccttt 45829354  T
Q  309 tcatctct 316  Q
    | ||||||    
T  45829355 ttatctct 45829362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 316
Target Start/End: Complemental strand, 51038893 - 51038849
Alignment:
Q  273 tattttagtaatttcacatcacatcctca-ccccttttcatctct 316  Q
    ||||||||||||||||||||||| | ||| |||||||||||||||    
T  51038893 tattttagtaatttcacatcacaccatcacccccttttcatctct 51038849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 314
Target Start/End: Complemental strand, 31800750 - 31800646
Alignment:
Q  211 aggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    |||||||||||||| ||||||| ||||| |||||||||   |||||||| ||  ||||||| ||||||||||||||| |||||| ||| |||||||||||    
T  31800750 aggaaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcacccctttt 31800651  T
Q  310 catct 314  Q
    |||||    
T  31800650 catct 31800646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 297
Target Start/End: Original strand, 4300544 - 4300629
Alignment:
Q  213 gaaaaagataggtagaca-ccttttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatc 297  Q
    ||||||||| | |||||| ||||||||||||| ||| ||||||||||||| ||||||||  ||||||| |||||||||||||||||    
T  4300544 gaaaaagattgatagacatccttttttatacatctctcatgtacacctcatgtgttagggatattttaataatttcacatcacatc 4300629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 1815619 - 1815721
Alignment:
Q  212 ggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttttc 310  Q
    ||||||||||||||||||||||||||| ||| |      |||||||||  | |||||||| ||||||||||||||| |||||| ||| ||||||||||||    
T  1815619 ggaaaaagataggtagacaccttttttcataaagaa---atgtacaccctatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 1815715  T
Q  311 atctct 316  Q
    ||||||    
T  1815716 atctct 1815721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 2237468 - 2237362
Alignment:
Q  212 ggaaaaagataggtagacacctttttt-atacacctcccatgtacacctc-acgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||||||||||| ||||| |||||| ||  ||||||||| | | || ||||| |||||| |||||||| |||||| ||| |||||| ||||    
T  2237468 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcacccttttt 2237369  T
Q  310 catctct 316  Q
    |||||||    
T  2237368 catctct 2237362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 39371119 - 39371013
Alignment:
Q  212 ggaaaaagataggtagacacctttttt-atacacctcccatgtacacctc-acgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||||||||||| ||||| |||||| ||  ||||||||| | | || ||||| |||||| |||||||| |||||| ||| |||||| ||||    
T  39371119 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 39371020  T
Q  310 catctct 316  Q
    |||||||    
T  39371019 catctct 39371013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 17225447 - 17225403
Alignment:
Q  272 gtattttagtaatttcacatcacatcctcaccccttttcatctct 316  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||    
T  17225447 gtattttagtaatttcacatcacatcatcacctcttttcatctct 17225403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 27553372 - 27553455
Alignment:
Q  210 taggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatca 293  Q
    ||||||||| |||| |||||||| ||||| |||||||||  |||||||||  | |||||||||||||||||||||||| ||||||    
T  27553372 taggaaaaa-atagatagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatca 27553455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 14831737 - 14831630
Alignment:
Q  211 aggaaaaagataggtagacacctttttt-atacacctcccatgtacacctc-acgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    |||||||||||||||| ||||| ||||| |||||| ||  ||||||||| | |||| ||||| |||||| | |||||| |||||| ||| |||||| |||    
T  14831737 aggaaaaagataggtaaacaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcaccctttt 14831638  T
Q  309 tcatctct 316  Q
    ||||||||    
T  14831637 tcatctct 14831630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 40887940 - 40888047
Alignment:
Q  211 aggaaaaagataggtagaca-ccttttttatacacctcccatgtaca-cctcacgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    |||||||||||||||||||| ||||||| |||||||||  ||||||| || ||  | ||||  ||||||||||||||| |||||| |||  ||||| |||    
T  40887940 aggaaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccaccctttt 40888039  T
Q  309 tcatctct 316  Q
    ||||||||    
T  40888040 tcatctct 40888047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 302
Target Start/End: Original strand, 19124474 - 19124563
Alignment:
Q  214 aaaaagataggtagacacct-tttttatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcac 302  Q
    |||||||||||||||||||  |||||||||||||| ||| ||||  |||||||| |   ||||||||||||||| |||||| ||| ||||    
T  19124474 aaaaagataggtagacaccaatttttatacacctctcatatacagttcacgtgtcaaaggtattttagtaattttacatcatatcatcac 19124563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 13347320 - 13347216
Alignment:
Q  212 ggaaaaagataggtagaca-ccttttttatacacctcccatgtaca-cctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||||||||| ||||||| |||||| ||  ||||||| ||||| || ||||| |||||| |||||||  |||||| ||| |||| | ||||    
T  13347320 ggaaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactcttttt 13347221  T
Q  310 catct 314  Q
    |||||    
T  13347220 catct 13347216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 42683792 - 42683685
Alignment:
Q  211 aggaaaaagataggtagaca-ccttttttatacacctcccatgtacacctc-acgtgttaggagtattttagtaatttcacatcacatcctcaccccttt 308  Q
    ||||||||||||| |||||| ||||||| |||||||||  ||||||||| | |  | ||||| ||||||||||||||| |||||| |||  || || |||    
T  42683792 aggaaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatcctttt 42683693  T
Q  309 tcatctct 316  Q
    ||||||||    
T  42683692 tcatctct 42683685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 309
Target Start/End: Original strand, 41003850 - 41003948
Alignment:
Q  212 ggaaaaagataggtagacaccttttt--tatacacctcccatgtacacctcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||  ||| ||||||||  |||||||||| |||||||||| ||  ||| |||  ||||| |||||||| |||||||||| ||| |||||||    
T  41003850 ggaaaaagatagacagaaacctttttgttatacacctctcatgtacaccccatatgtcagggatattt-agtaattttacatcacatcatcatccctttt 41003948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 286
Target Start/End: Original strand, 87160 - 87237
Alignment:
Q  210 taggaaaaagataggtagacacctttttt-atacacctcccatgtacacctcacgtgttaggagtattttagtaattt 286  Q
    ||||||||||||||||||||||||||||| ||||||||   ||||||||| || |||||||| |||||||||||||||    
T  87160 taggaaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaattt 87237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 6910 - 6804
Alignment:
Q  212 ggaaaaagataggtagacacctttttt-atacacctcccatgtacacc-tcacgtgttaggagtattttagtaatttcacatcacatcctcacccctttt 309  Q
    ||||||||||||||||| ||||||||| |||||| ||  ||||||||| ||| || |||||  ||||| |||||||| |||||| ||| |||||| ||||    
T  6910 ggaaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcacccttttt 6811  T
Q  310 catctct 316  Q
    |||||||    
T  6810 catctct 6804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 13379 - 13322
Alignment:
Q  51 atgcaacacatgaatgaataaagaaacagattgttgaaagatcatagttgtagtcatg 108  Q
    |||||||| ||||||||||| ||||||||||||  ||| ||||||| |||||||||||    
T  13379 atgcaacatatgaatgaatagagaaacagattgaagaatgatcatacttgtagtcatg 13322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University