View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4943_high_6 (Length: 274)
Name: NF4943_high_6
Description: NF4943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4943_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 18035221 - 18034982
Alignment:
| Q |
17 |
cagactgacacatcatggtgtctgacacatacatgactttgacacatgcgtcagtgtcgtgtacactctgccgtgtcagtgtatgttgtttatgtgttca |
116 |
Q |
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| T |
18035221 |
cagactgacacatcatggtgtctgacacatacatgactttgacacatgcgtcagtgtcatgtacactgtaccgtgtcagtgtatgttgtttatgtgttca |
18035122 |
T |
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| Q |
117 |
tgttagtgtcgtttctaatatctgtgtatatgtcattgttacataagtaatcatcaaaggcttcaaaactgtgtcttcttgttacctgcattcataagga |
216 |
Q |
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| T |
18035121 |
tattagtgtcgtttctaatatctgtgtatatgtcattgttacataagtaatcatcaaaggcttccaaactgtg---tcttgttacctgcattcttaagga |
18035025 |
T |
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| Q |
217 |
tctggagaagattcgattttttcttgagtttgagagctgtttg |
259 |
Q |
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| T |
18035024 |
tctggagaagattcgattttttcttgagtttgagagctgtttg |
18034982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 18035385 - 18035289
Alignment:
| Q |
14 |
catcagactgacacatcatggtgtctgacacatacatgactttgacacatgcgtcagtgtcgtgtacactctgccgtgtcagtgtatgttgtttatg |
110 |
Q |
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| T |
18035385 |
catcagactgacacatcatggtgtctgacacatacatgactttgacacatgcgttagtgtcgtgtacactctaccgtatcagtgtatgttgtttatg |
18035289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 18035504 - 18035414
Alignment:
| Q |
38 |
ctgacacatacatgactttgacacatgcgtcagtgtcgtgtacactctgccgtgtcagtgtatgttgtttatgtgttcatgttagtgtcgt |
128 |
Q |
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| T |
18035504 |
ctgacacatacatgactttgacacatgagccagtgtcgtgtacactgtaccgtctcagtgtatgttgtttatgtgttcacgttagtgtcgt |
18035414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 18035263 - 18035227
Alignment:
| Q |
22 |
tgacacatcatggtgtctgacacatacatgactttga |
58 |
Q |
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| T |
18035263 |
tgacacatcatggtgtctgacacatacatgactttga |
18035227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 63
Target Start/End: Complemental strand, 18035414 - 18035383
Alignment:
| Q |
32 |
tggtgtctgacacatacatgactttgacacat |
63 |
Q |
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| T |
18035414 |
tggtgtctgacacatacatgactttgacacat |
18035383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 18052728 - 18052662
Alignment:
| Q |
193 |
tcttgttacctgcattcataaggatctggagaagattcgattttttcttgagtttgagagctgtttg |
259 |
Q |
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| T |
18052728 |
tcttgttacctgcgtccttaagcatttgaagaaggttcagttttttcttgagtttgagagctgtttg |
18052662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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