View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4943_low_1 (Length: 490)
Name: NF4943_low_1
Description: NF4943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4943_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 115 - 479
Target Start/End: Original strand, 41459358 - 41459711
Alignment:
| Q |
115 |
gtgtagtttcttggtaggagcttttccctttattttccaaaaaagagttcatcctttgtttttgaataacagagtggattctctccaatgaaaatccaat |
214 |
Q |
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| T |
41459358 |
gtgtagtttcttggtaggagcttttccctttattttccaaaaaagagttcatcctttgtttttgaataacagagtggattctctccaatgaaaatccaat |
41459457 |
T |
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| Q |
215 |
taaatctggattatgcgaaacatagatttnnnnnnntatataagaaaaatagggatcgtgtattttatttgtgaggattgacaaatgagaaaaaccaagt |
314 |
Q |
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| T |
41459458 |
taaatctggattatgcgaaacatagattaaaaaaaatatataagaaaaatagggatcgtgtattttatttgtgaggattgacaaatgagaaaaaccaagt |
41459557 |
T |
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| Q |
315 |
gataaatacaacccgaaaaaattcactcccttagtcccttatacaccacaacaagttataagcctaaatcaatacatcaattttctttccctcattttta |
414 |
Q |
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| T |
41459558 |
gataaatacaacccgaaaaaattcac--------tcccttatacacc---acaagttataagcctaaatcaatacatcaattttctttccctcattttta |
41459646 |
T |
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| Q |
415 |
cttatatttcgttacaaatgaagtattttccaaaaacacactcgcgcacacacttacaccttcat |
479 |
Q |
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| T |
41459647 |
cttatatttcgttacaaatgaagtattttccaaaaacacactcgcgcacacacttacaccttcat |
41459711 |
T |
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