View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4943_low_10 (Length: 204)

Name: NF4943_low_10
Description: NF4943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4943_low_10
NF4943_low_10
[»] chr6 (3 HSPs)
chr6 (11-183)||(1512219-1512391)
chr6 (61-118)||(5477351-5477408)
chr6 (48-115)||(12200397-12200464)
[»] scaffold0169 (1 HSPs)
scaffold0169 (11-183)||(22704-22876)
[»] chr3 (6 HSPs)
chr3 (11-183)||(1538936-1539108)
chr3 (11-179)||(22522542-22522710)
chr3 (48-179)||(6032809-6032940)
chr3 (11-177)||(54332481-54332647)
chr3 (11-118)||(19792280-19792387)
chr3 (70-103)||(27393217-27393250)
[»] chr8 (5 HSPs)
chr8 (31-179)||(44587585-44587733)
chr8 (23-177)||(25938972-25939126)
chr8 (50-107)||(30273684-30273741)
chr8 (48-118)||(7176112-7176182)
chr8 (56-118)||(17703314-17703376)
[»] chr7 (3 HSPs)
chr7 (49-165)||(2274837-2274953)
chr7 (48-114)||(27804703-27804769)
chr7 (57-117)||(20463586-20463646)
[»] chr5 (4 HSPs)
chr5 (48-128)||(14489327-14489407)
chr5 (48-128)||(27039787-27039865)
chr5 (57-166)||(38356614-38356723)
chr5 (56-122)||(34673768-34673834)
[»] chr1 (6 HSPs)
chr1 (48-177)||(3158418-3158547)
chr1 (11-99)||(19477383-19477471)
chr1 (55-114)||(3215058-3215117)
chr1 (45-118)||(46149305-46149378)
chr1 (48-118)||(30091970-30092040)
chr1 (76-117)||(12928642-12928683)
[»] chr4 (3 HSPs)
chr4 (11-99)||(50858465-50858553)
chr4 (11-118)||(11116163-11116270)
chr4 (55-111)||(34767670-34767726)
[»] chr2 (4 HSPs)
chr2 (31-117)||(32835921-32836007)
chr2 (55-114)||(14150332-14150391)
chr2 (48-105)||(40492450-40492507)
chr2 (26-117)||(11524066-11524157)


Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 1512391 - 1512219
Alignment:
Q  11 acatcatcaaaaatatgggaactagctagggaaatgacctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaat 110  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1512391 acatcatcaaaaatatggggactagctagggaaatgacctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaat 1512292  T
Q  111 tttcaaaacaatcattgcaattcttcctacattcatccattatagctccaaactcggatatatcattcccgcc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1512291 tttcaaaacaatcattgcaattcttcctacattcatccattatagctccaaactcggatatatcattcccgcc 1512219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 5477351 - 5477408
Alignment:
Q  61 agtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaaa 118  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||    
T  5477351 agtatgagtgacctcattcgcttgtctccgactaaactccaccttagagttttcaaaa 5477408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 12200397 - 12200464
Alignment:
Q  48 cctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttca 115  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| |||| | ||||||    
T  12200397 cctctctagcaagagtatgagcgacctcattcgcttgtctccaactaaactccatcttaaagttttca 12200464  T

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Target: scaffold0169 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 22704 - 22876
Alignment:
Q  11 acatcatcaaaaatatgggaactagctagggaaatgacctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaat 110  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  22704 acatcatcaaaaatatggggactagctagggaaatggtctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaacttcaccttagagt 22803  T
Q  111 tttcaaaacaatcattgcaattcttcctacattcatccattatagctccaaactcggatatatcattcccgcc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22804 tttcaaaacaatcattgcaattcttcctacattcatccattatagctccaaactcggatatatcattcccgcc 22876  T

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Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 1538936 - 1539108
Alignment:
Q  11 acatcatcaaaaatatgggaactagctagggaaatgacctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaat 110  Q
    ||||||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  1538936 acatcatcaaaaacatgggaactagttagggaaatggcctctggagcaagagtatgagcgaccatattcgcttgtctccgactaaactccaccttagagt 1539035  T
Q  111 tttcaaaacaatcattgcaattcttcctacattcatccattatagctccaaactcggatatatcattcccgcc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1539036 tttcaaaacaatcattgcaattcttcctacattcatccattatatctccaaactcggatatatcattcccgcc 1539108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 22522542 - 22522710
Alignment:
Q  11 acatcatcaaaaatatgggaactagctagggaaatgacctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaat 110  Q
    |||| |||||||| | ||||||||||||| ||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22522542 acattatcaaaaacacgggaactagctagagaagtggcttctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagagt 22522641  T
Q  111 tttcaaaacaatcattgcaattcttcctacattcatccattatagctccaaactcggatatatcattcc 179  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  22522642 tttcaaaaaaatcattgcaattcttcctacattcatccattatggctccaaattcggatatatcattcc 22522710  T

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Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 179
Target Start/End: Original strand, 6032809 - 6032940
Alignment:
Q  48 cctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaaacaatcattgcaattcttcctacattcatc 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| || | ||||||||||||||||||||||||||||    
T  6032809 cctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaacaccaccttagagtttttaagaaaatcattgcaattcttcctacattcatc 6032908  T
Q  148 cattatagctccaaactcggatatatcattcc 179  Q
    |||||| |||||||||||||||||||||||||    
T  6032909 cattatggctccaaactcggatatatcattcc 6032940  T

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Target: chr3; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 54332481 - 54332647
Alignment:
Q  11 acatcatcaaaaatatgggaactagctagggaaatgacctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaat 110  Q
    ||||||||||||| ||||| ||||||||| ||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  54332481 acatcatcaaaaa-atggggactagctagagaagtggcctctcgagcaagagtatgagcgaccacattcgtttgtctccgactaaactccaccttagagt 54332579  T
Q  111 ttt-caaaacaatcattgcaattcttcctacattcatccattatagctccaaactcggatatatcatt 177  Q
    |||  |||| |||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||    
T  54332580 tttgaaaaaaaatcattgcaattcttcctacatttatccattatggctccaaactctgatatatcatt 54332647  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 19792387 - 19792280
Alignment:
Q  11 acatcatcaaaaatatgggaactagctagggaaatgacctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaat 110  Q
    ||||||||||| | ||||| ||||||||   || || |||||| |||||| |||||||| |||||||| |||||||||||| |||||||||||||||| |    
T  19792387 acatcatcaaagagatggggactagctaataaagtggcctctctagcaagtgtatgagcaaccacatttgcttgtctccgattaaactccaccttagagt 19792288  T
Q  111 tttcaaaa 118  Q
    ||||||||    
T  19792287 tttcaaaa 19792280  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 27393217 - 27393250
Alignment:
Q  70 gaccacattcgcttgtctccgactaaactccacc 103  Q
    |||||||||||||||||||| |||||||||||||    
T  27393217 gaccacattcgcttgtctccaactaaactccacc 27393250  T

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Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 44587733 - 44587585
Alignment:
Q  31 actagctagggaaatgacctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaaacaatcattgcaa 130  Q
    ||||||||||||| || | ||| ||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| || ||    
T  44587733 actagctagggaagtggcttcttgagcaagagcatgagcaaccacattcgattgtctccgactaaactccaccttagagttttcaaaataatcaatggaa 44587634  T
Q  131 ttcttcctacattcatccattatagctccaaactcggatatatcattcc 179  Q
    |||||||||||||| |||||||  |||||||||||||||||||||||||    
T  44587633 ttcttcctacattcgtccattacggctccaaactcggatatatcattcc 44587585  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 25939126 - 25938972
Alignment:
Q  23 atatgggaactagctagggaaatgacctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaaacaat 122  Q
    ||||||| | |||||| | || || |||||||||| | ||| ||||||||| ||||||||||||||||||||||||| |||||||| ||||||||  ||     
T  25939126 atatggggattagctaagaaagtggcctctcgagctaaagtgtgagcgacctcattcgcttgtctccgactaaactctaccttagagttttcaaagtaaa 25939027  T
Q  123 cattgcaa-ttcttcctacattcatccattatagctccaaactcggatatatcatt 177  Q
     ||| ||| ||||| ||||| || |||| ||| ||||||||||||| |||||||||    
T  25939026 gattacaacttctt-ctacactcctccactattgctccaaactcggttatatcatt 25938972  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 30273684 - 30273741
Alignment:
Q  50 tctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttag 107  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  30273684 tctctagcaagagtatgagcgacttcattcgcttgtctccgactaaactccaccttag 30273741  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 7176182 - 7176112
Alignment:
Q  48 cctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaaa 118  Q
    |||||||||| | | ||||||||||  ||||||||||||||| || |||||| ||||||||||||||||||    
T  7176182 cctctcgagctaaattatgagcgacttcattcgcttgtctcctacaaaactcaaccttagaattttcaaaa 7176112  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 17703314 - 17703376
Alignment:
Q  56 gcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaaa 118  Q
    |||||||||||||| |||||||| | |||||||| ||||||||| |||| | | |||||||||    
T  17703314 gcaagagtatgagctaccacatttgattgtctccaactaaactctacctaatagttttcaaaa 17703376  T

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Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 2274837 - 2274953
Alignment:
Q  49 ctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaaacaatcattgcaattcttcctacattcatcc 148  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||| ||||||    
T  2274837 ctctcgagcaagaatatgagcgaccacattcgcttgtctccgactaaacttcaccttaaagttttcaaaataatcattgcaattcttcctacactcatcc 2274936  T
Q  149 attatagctccaaactc 165  Q
     ||||||||| ||||||    
T  2274937 cttatagctctaaactc 2274953  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 27804703 - 27804769
Alignment:
Q  48 cctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttc 114  Q
    |||||| ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |||||    
T  27804703 cctctctagcaagagtatgagcgacctcattcgcttgtttccgactgaactccaccttagagttttc 27804769  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 20463586 - 20463646
Alignment:
Q  57 caagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaa 117  Q
    ||||| |||||||||||| | |||||||||||| | ||||||| |||||||| ||||||||    
T  20463586 caagaatatgagcgaccatactcgcttgtctcctattaaactcaaccttagagttttcaaa 20463646  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 14489327 - 14489407
Alignment:
Q  48 cctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaaacaatcattgc 128  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||| ||| || ||||||    
T  14489327 cctctctagcaagagtatgagcgacctcattcgcttgtctccgactaaacttcaccttagagttttcgaaataaacattgc 14489407  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 27039787 - 27039865
Alignment:
Q  48 cctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaaacaatcattgc 128  Q
    |||||| ||||||||||||||||||| |||||||| ||||||   |||||||||||||||| ||||| ||| || ||||||    
T  27039787 cctctctagcaagagtatgagcgacctcattcgctcgtctcc--ttaaactccaccttagagttttcgaaataaacattgc 27039865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 38356723 - 38356614
Alignment:
Q  57 caagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaaacaatcattgcaa-ttcttcctacattcatccattatag 155  Q
    |||||||||||| |||  || || |||||||||||||||| ||||||||||||||||| ||| || |||| |||  ||||  ||||||| |||| ||| |    
T  38356723 caagagtatgagggacttcactcacttgtctccgactaaattccaccttagaattttcgaaataaacattacaacatctt-ttacattcgtccactattg 38356625  T
Q  156 ctccaaactcg 166  Q
    |||||||||||    
T  38356624 ctccaaactcg 38356614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 34673834 - 34673768
Alignment:
Q  56 gcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaaacaat 122  Q
    ||||||||||||  ||||| |||||||||| ||| | ||||||| |||||||| |||||||| ||||    
T  34673834 gcaagagtatgaatgaccatattcgcttgtttcctattaaactcaaccttagagttttcaaaccaat 34673768  T

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Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 3158418 - 3158547
Alignment:
Q  48 cctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaaacaatcattgcaattcttcctacattcatc 147  Q
    ||||||||||||||||||||| |||  || |||||||||||||||||||||| |||||||| ||||||||| ||  ||| ||| |  ||  ||| || ||    
T  3158418 cctctcgagcaagagtatgagtgacttcactcgcttgtctccgactaaactctaccttagagttttcaaaataaagattacaacttctctgacactcctc 3158517  T
Q  148 cattatagctccaaactcggatatatcatt 177  Q
    || ||| ||||||||||| |||||||||||    
T  3158518 cactattgctccaaactcagatatatcatt 3158547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 19477471 - 19477383
Alignment:
Q  11 acatcatcaaaaatatgggaactagctagggaaatgacctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactc 99  Q
    ||||||| |||| |||||| |||||||| | || || ||||||| |||||||| ||||||||| |||||||||||||||||||||||||    
T  19477471 acatcattaaaagtatggggactagctaagaaagtggcctctcgtgcaagagtgtgagcgacctcattcgcttgtctccgactaaactc 19477383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 3215117 - 3215058
Alignment:
Q  55 agcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttc 114  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||||||||||||| |||||    
T  3215117 agcaagagtatgagcgacctcattcgcttgtctcctactgaactccaccttagagttttc 3215058  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 46149305 - 46149378
Alignment:
Q  45 tgacctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaaa 118  Q
    |||| |||||||||||||| ||| ||||||||||| ||||| | | |||||||||||||||||| |||||||||    
T  46149305 tgacatctcgagcaagagtctgaacgaccacattcccttgttttcaactaaactccaccttagagttttcaaaa 46149378  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 30091970 - 30092040
Alignment:
Q  48 cctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaaa 118  Q
    |||||||||| ||||| ||||||||| | |||| |||||||||||||||||| |||||||  |||||||||    
T  30091970 cctctcgagctagagtgtgagcgacctccttcgattgtctccgactaaactctaccttagtgttttcaaaa 30092040  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 12928683 - 12928642
Alignment:
Q  76 attcgcttgtctccgactaaactccaccttagaattttcaaa 117  Q
    |||||||||| ||||||||||||| |||||||| ||||||||    
T  12928683 attcgcttgtttccgactaaactctaccttagagttttcaaa 12928642  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 50858553 - 50858465
Alignment:
Q  11 acatcatcaaaaatatgggaactagctagggaaatgacctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactc 99  Q
    |||| |||||| | ||||| |||||||| ||| | | |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  50858553 acattatcaaacacatggggactagctaaggacaaggcctctcgagcaagagtatgagcgacctcgttcgcttgtctccgactaaactc 50858465  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 11116270 - 11116163
Alignment:
Q  11 acatcatcaaaaatatgggaactagctagggaaatgacctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaat 110  Q
    ||||||| |||| |||||| |||||||| |||  || ||||| | |||||||| ||||||||| | ||||||||||||||||||||||| |||||||| |    
T  11116270 acatcattaaaattatggggactagctaaggacgtggcctcttgtgcaagagtgtgagcgacctcgttcgcttgtctccgactaaactctaccttagagt 11116171  T
Q  111 tttcaaaa 118  Q
    || |||||    
T  11116170 ttgcaaaa 11116163  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 34767670 - 34767726
Alignment:
Q  55 agcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaatt 111  Q
    ||||| ||||||||||||  ||||||||| ||| ||||| |||| ||||||||||||    
T  34767670 agcaaaagtatgagcgacttcattcgcttatcttcgactgaacttcaccttagaatt 34767726  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 32835921 - 32836007
Alignment:
Q  31 actagctagggaaatgacctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaa 117  Q
    |||||||||| || || ||||||| |||||| ||||||| ||| |||||| |||||||||||||||||| |||||||| ||||||||    
T  32835921 actagctaggaaagtggcctctcgtgcaagattatgagctacctcattcgtttgtctccgactaaactcaaccttagagttttcaaa 32836007  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 14150332 - 14150391
Alignment:
Q  55 agcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttc 114  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||  ||||||| |||||    
T  14150332 agcaagagtatgagcgacctcattcgcttgtctccgactgaactcatccttagagttttc 14150391  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 40492507 - 40492450
Alignment:
Q  48 cctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccacctt 105  Q
    ||||||||||||  || ||||||||| ||||||||||||||||||||||||| |||||    
T  40492507 cctctcgagcaaatgtgtgagcgacctcattcgcttgtctccgactaaactctacctt 40492450  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 11524066 - 11524157
Alignment:
Q  26 tgggaactagctagggaaatgacctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaa 117  Q
    |||||||||| ||||   ||| |||||| ||||| |||||||||||| | |||||||||||||| | ||||||| | |||||| ||||||||    
T  11524066 tgggaactagttaggagtatggcctctctagcaatagtatgagcgactatattcgcttgtctcctattaaactcaatcttagagttttcaaa 11524157  T

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