View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4943_low_3 (Length: 456)
Name: NF4943_low_3
Description: NF4943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4943_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 35978480 - 35978910
Alignment:
| Q |
18 |
gttacatgcaatttttctctaatatttatggttcatgacatcaatttataggctcttcaatgccaacaaatgaatatgggtcaaaagagaaagttggagc |
117 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35978480 |
gttacatacaatttttctctaatatttatggttcatgacatcaatatataggctcttcaatgccaacaaatgaatatgggtcaaaagagaaagttggagc |
35978579 |
T |
|
| Q |
118 |
tgccaaaccacaaaagtgtccagttccatcacaatttcttgatattttaagtggaaaacaatttctttcactttattcactaatgtgtttttaaatctta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35978580 |
tgccaaaccacaaaagtgtccagttccatcacaatttcctgatattttaagtggtaaacaatttcttttactttattcactaatgtgtttttaaatctta |
35978679 |
T |
|
| Q |
218 |
gataattttgctactattcttcttcaagatatccctttannnnnnnnnnnnnngtatttcaaaatctatctaacaactttaatcaactcattcttccaga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35978680 |
gataattttgctactattcttcttcaagatatccctttatttttcctttttttgtatttcaaaatctatctaacaactttaatcaactcattcttccaga |
35978779 |
T |
|
| Q |
318 |
tacggatcgtttgaataaacttcagcatcaaaactacgctccgaagaacaatcttgattcacctgtttttacaattgaagctgaggggcctcctcatgac |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
35978780 |
tacggatcgtttgaataaacttcagcatcaaaactacgcaagtaagaacaatcttgattcacctgtttttacaattgaagctgaggggccacctcgtgac |
35978879 |
T |
|
| Q |
418 |
attcgctataaggctacagttgttgatgatg |
448 |
Q |
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| T |
35978880 |
attcgctataatgctacagttgttgttgatg |
35978910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 66 - 433
Target Start/End: Original strand, 35968455 - 35968817
Alignment:
| Q |
66 |
taggctcttcaatgccaacaaatgaatatgggtcaaaagagaaagttggagctgccaaaccacaaaagtgtccagttccatcacaatttcttgatatttt |
165 |
Q |
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||||||||||||| ||||||||||||||| | ||| |||||||||||| ||||||||||| ||||||| ||||||||||||| |||||| ||||| | |
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| T |
35968455 |
taggctcttcaataccaacaaatgaatatagttcagaagagaaagttgatgctgccaaacctcaaaagtatccagttccatcagaatttccacatattat |
35968554 |
T |
|
| Q |
166 |
aagtggaaaacaatttctttcactttattcactaatgtgtttttaaatcttagataattttgctactattcttcttcaagatatccctttannnnnnnnn |
265 |
Q |
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|||||| |||| ||||||||||||||| |||||||||| ||| ||||||| |||||||| | |||||||||||||||||||||| |||| |
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| T |
35968555 |
aagtggtaaac-atttctttcactttagtcactaatgtttttgcaaatcttcgataatttggttactattcttcttcaagatatcacttt----ttttat |
35968649 |
T |
|
| Q |
266 |
nnnnngtatttcaaaatctatctaacaactttaatcaactcattcttccagatacggatcgtttgaataaacttcagcatcaaaactacgctccgaagaa |
365 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| || || |
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| T |
35968650 |
cctttctatttcaacatctatctaacaacgttaatcaactcattcttccagatacggattgtttgagcaaacttcagcatcaaaactatgctcaaaataa |
35968749 |
T |
|
| Q |
366 |
caatcttgattcacctgtttttacaattgaagctgaggggcctcctcatgacattcgctataaggcta |
433 |
Q |
| |
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||||||||||||||||||||| |||| |||||| |||||||| |||||||| ||| |||||||||| |
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| T |
35968750 |
caatcttgattcacctgttttgacaactgaagccgaggggccatctcatgacgttcattataaggcta |
35968817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 66 - 207
Target Start/End: Original strand, 35951356 - 35951497
Alignment:
| Q |
66 |
taggctcttcaatgccaacaaatgaatatgggtcaaaagagaaagttggagctgccaaaccacaaaagtgtccagttccatcacaatttcttgatatttt |
165 |
Q |
| |
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|||||| |||||| |||||| |||||||||| |||||||||||||||| |||| ||||||| ||| || ||||| |||| |||||| || | |||| |
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| T |
35951356 |
taggcttttcaataccaacagatgaatatggttcaaaagagaaagttgaagctaccaaacctcaagagagtccacttcctgcacaatctccggttattag |
35951455 |
T |
|
| Q |
166 |
aagtggaaaacaatttctttcactttattcactaatgtgttt |
207 |
Q |
| |
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|| ||| |||||| |||||||||||||||||||||||||||| |
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| T |
35951456 |
aactggtaaacaacttctttcactttattcactaatgtgttt |
35951497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 284 - 433
Target Start/End: Original strand, 35971622 - 35971771
Alignment:
| Q |
284 |
tatctaacaactttaatcaactcattcttccagatacggatcgtttgaataaacttcagcatcaaaactacgctccgaagaacaatcttgattcacctgt |
383 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||||||||| ||| |||| |||||||| |||| || |||||||||||| ||||||| |
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| T |
35971622 |
tatctaacaacaataatcaacacattcttccagatatggatcgtttgagcaaaaaacagctacaaaactatgctcgaaaaaacaatcttgatccacctgt |
35971721 |
T |
|
| Q |
384 |
ttttacaattgaagctgaggggcctcctcatgacattcgctataaggcta |
433 |
Q |
| |
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||||||| || || ||||||||| ||||||||| |||| ||||| |||| |
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| T |
35971722 |
ttttacatttaaaactgaggggctacctcatgactttcgttataaagcta |
35971771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 433
Target Start/End: Original strand, 35956121 - 35956211
Alignment:
| Q |
343 |
catcaaaactacgctccgaagaacaatcttgattcacctgtttttacaattgaagctgaggggcctcctcatgacattcgctataaggcta |
433 |
Q |
| |
|
|||||||||| |||| |||||| |||||||| |||||||||||||||| || |||||||||| |||||||||||||||||||| |||| |
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| T |
35956121 |
catcaaaactgtgctcgaaagaacgatcttgatcaacctgtttttacaattaaaactgaggggccacctcatgacattcgctataaagcta |
35956211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 35955822 - 35956034
Alignment:
| Q |
18 |
gttacatgcaatttttctctaatatttatggttcatgacatcaatttataggctcttcaatgccaacaaatgaatatgggtcaaaagagaaagttggagc |
117 |
Q |
| |
|
||||||| ||||||| ||||||| ||| |||||||||| || ||||| || ||||||| ||||||||||| |||| ||||||||| ||||| ||| |
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| T |
35955822 |
gttacatacaattttactctaatgtttgtggttcatgatgtccattta--ggttcttcaaaaccaacaaatgagcatggttcaaaagaggaagttaaagc |
35955919 |
T |
|
| Q |
118 |
tgccaaaccacaaaagtgtccagttccatcacaatttcttgatattttaagtggaaaacaatttctttcactttattcactaatgtgtttttaaatctta |
217 |
Q |
| |
|
|| |||||| || || ||||||||| | ||||| || | |||| |||||| |||||||||||||| |||| | |||||| ||||| ||||||| |
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| T |
35955920 |
tgtcaaacctcaggagagtccagttctacaacaatctccagttattaaaagtggtaaacaatttctttccctttgcttactaatatgtttgcaaatcttt |
35956019 |
T |
|
| Q |
218 |
gataattttgctact |
232 |
Q |
| |
|
|||| ||||||||| |
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| T |
35956020 |
gatacgtttgctact |
35956034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 35971524 - 35971558
Alignment:
| Q |
173 |
aaacaatttctttcactttattcactaatgtgttt |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
35971524 |
aaacaatttctttcactttattcactaatgtgttt |
35971558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 325
Target Start/End: Original strand, 35956080 - 35956121
Alignment:
| Q |
284 |
tatctaacaactttaatcaactcattcttccagatacggatc |
325 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
35956080 |
tatctaacaacaataatcaactcattctttcagatacggatc |
35956121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 35958424 - 35958493
Alignment:
| Q |
284 |
tatctaacaactttaatcaactcattcttccagatacggatcgtttgaataaacttcagcatcaaaacta |
353 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||| | ||| |||||| ||||||||||| || ||||| |
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|
| T |
35958424 |
tatctaacaacaataatcaacacattcttccaaataagaatcatttgaacaaacttcagcagcataacta |
35958493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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