View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4943_low_8 (Length: 238)
Name: NF4943_low_8
Description: NF4943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4943_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 21078235 - 21077996
Alignment:
| Q |
1 |
tgttgaacaaggtgatcagagcggtggtgatgtgatttgtggccaccgagtgcagtgccggaggtgaagattctgtggcacaaatcacatttgaacattg |
100 |
Q |
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| T |
21078235 |
tgttgaacaaggtgatcagagcggtggtgatgtgatttgtggccgccgagtgcagtgccggaggtgaagattctgtggcacaaatcacatttgaacattg |
21078136 |
T |
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| Q |
101 |
ttgatattaaacaaccaatattctttttctgctcatc------------gtgatcatattctttcttttgttgttgttgtttatggttgtcgtaacaaga |
188 |
Q |
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|||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21078135 |
ttgatattgaacaaccaatattctttttctgatcatcagtagcatcatggtgatcatattctttcttttgatgttgttgtttatggttgtcgtaacaaga |
21078036 |
T |
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| Q |
189 |
acgatgagaaaaatgtttcttcatgatcgtgatgatgatg |
228 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
21078035 |
acgaagagaaaaatgtttcttcatgatcgtgatgatgatg |
21077996 |
T |
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