View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4943_low_9 (Length: 237)
Name: NF4943_low_9
Description: NF4943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4943_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 18035662 - 18035884
Alignment:
| Q |
1 |
tagatgctgtacaacaggctacagggtagtcaccaggaatagaatgtaatagagattcagcacgaaacagccagctttatcaagtttacatgtgtgcaga |
100 |
Q |
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| T |
18035662 |
tagatgctatacaacaggctacagggtattcaccaggaatagagtgtaatagagattcagcacgaaacagccagctttatcaagtttacatgtgtgcgga |
18035761 |
T |
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| Q |
101 |
catttctgggtcaaaattcattgagtgccctggtcttccaatgggtagctgtgacgctaatgtacaattccccaagttttaagagaatttgttttgttaa |
200 |
Q |
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| T |
18035762 |
catttctgggtcaaaattcattgagtgccctggtcttccaatgggtagctgtgacgctaatgtacaattccccaagttttaagagaatttgttttgttaa |
18035861 |
T |
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| Q |
201 |
gtagaacatggtttgatttgtat |
223 |
Q |
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| T |
18035862 |
gtagaacatggtttgatttgtat |
18035884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 33 - 223
Target Start/End: Original strand, 18029671 - 18029861
Alignment:
| Q |
33 |
ccaggaatagaatgtaatagagattcagcacgaaacagccagctttatcaagtttacatgtgtgcagacatttctgggtcaaaattcattgagtgccctg |
132 |
Q |
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| T |
18029671 |
ccaggaatagaatgtaatagagattcagcacgtaacagccaactttatcaagtttacatgtgtgtggacacttctgggtcaaatttcattgagtgtcctt |
18029770 |
T |
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| Q |
133 |
gtcttccaatgggtagctgtgacgctaatgtacaattccccaagttttaagagaatttgttttgttaagtagaacatggtttgatttgtat |
223 |
Q |
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| T |
18029771 |
tgcttccaaggagtagatgtggtgaacaaattcaattccccaaattttaagagaatttattttgttaaagagaacatggtttaatttgtat |
18029861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 18047985 - 18048191
Alignment:
| Q |
1 |
tagatgctgtacaacaggctacagggtagtcaccaggaatagaatgtaatagagattcagcacgaaacagccagctttatcaagtttacatgtgtgcaga |
100 |
Q |
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|||||||| ||||||| |||||||||| |||||||||| ||||||||||||| ||| || || || ||||||| ||||||||||||||| || |
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| T |
18047985 |
tagatgctatacaacaagctacagggtttctcccaggaatagtatgtaatagagatccaggacttaaaagtcagcttttaaaagtttacatgtgtgtgga |
18048084 |
T |
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| Q |
101 |
catttctgggtcaaaattcattgagtgccctggtcttccaatgggtagctgtgacgctaatgtacaattccccaagttttaagagaatttgttttgttaa |
200 |
Q |
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| T |
18048085 |
tacttctgggtcaaatttcattgagtgccctggtgttccaatgggttcatgtggtgatacagtacaattctccaagttttgggttaatttgttttgttaa |
18048184 |
T |
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| Q |
201 |
gtagaac |
207 |
Q |
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| T |
18048185 |
gcagaac |
18048191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 18007131 - 18007198
Alignment:
| Q |
65 |
aaacagccagctttatcaagtttacatgtgtgcagacatttctgggtcaaaattcattgagtgccctg |
132 |
Q |
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| T |
18007131 |
aaacagccaactttatcaagtttacttgtgtgtggacacttctggatcagacttcattgactgccctg |
18007198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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