View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4944-Insertion-1 (Length: 408)

Name: NF4944-Insertion-1
Description: NF4944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4944-Insertion-1
NF4944-Insertion-1
[»] chr2 (11 HSPs)
chr2 (8-304)||(1479668-1479964)
chr2 (319-374)||(33891607-33891662)
chr2 (319-374)||(33890520-33890575)
chr2 (319-368)||(5583759-5583808)
chr2 (319-376)||(19299758-19299815)
chr2 (319-374)||(12299974-12300029)
chr2 (319-408)||(15553524-15553613)
chr2 (319-370)||(19298569-19298620)
chr2 (319-376)||(12301124-12301181)
chr2 (319-408)||(5583869-5583956)
chr2 (335-375)||(7577775-7577815)
[»] chr8 (17 HSPs)
chr8 (13-298)||(9935970-9936254)
chr8 (319-408)||(16434513-16434602)
chr8 (318-376)||(32901575-32901633)
chr8 (319-375)||(33586494-33586550)
chr8 (319-373)||(38574685-38574739)
chr8 (319-376)||(41062-41119)
chr8 (319-374)||(8304177-8304232)
chr8 (319-376)||(16432613-16432670)
chr8 (319-376)||(38573636-38573693)
chr8 (319-370)||(30781006-30781057)
chr8 (327-374)||(44077335-44077382)
chr8 (319-368)||(8302984-8303034)
chr8 (326-375)||(7690239-7690288)
chr8 (61-298)||(8273411-8273648)
chr8 (319-364)||(32900393-32900438)
chr8 (318-374)||(30779873-30779928)
chr8 (335-376)||(27163135-27163176)
[»] chr7 (18 HSPs)
chr7 (13-298)||(42460328-42460612)
chr7 (319-376)||(31430947-31431004)
chr7 (319-375)||(25491155-25491211)
chr7 (319-408)||(17237330-17237419)
chr7 (319-376)||(25489921-25489978)
chr7 (319-371)||(9118991-9119043)
chr7 (319-375)||(31433638-31433694)
chr7 (319-370)||(25275512-25275563)
chr7 (319-374)||(37413721-37413776)
chr7 (319-376)||(9113277-9113334)
chr7 (319-376)||(17238284-17238341)
chr7 (319-375)||(25274661-25274717)
chr7 (319-375)||(31432517-31432573)
chr7 (319-375)||(47497498-47497554)
chr7 (319-374)||(48909025-48909080)
chr7 (319-375)||(48909757-48909813)
chr7 (326-365)||(43100510-43100549)
chr7 (319-364)||(47496566-47496610)
[»] chr6 (5 HSPs)
chr6 (10-299)||(1033871-1034160)
chr6 (55-298)||(2921204-2921447)
chr6 (319-374)||(34021795-34021850)
chr6 (319-376)||(1756058-1756115)
chr6 (319-364)||(34022812-34022856)
[»] chr3 (9 HSPs)
chr3 (319-408)||(16386556-16386645)
chr3 (319-374)||(24842824-24842879)
chr3 (319-376)||(22896478-22896535)
chr3 (319-375)||(54204349-54204405)
chr3 (319-374)||(22895401-22895456)
chr3 (319-375)||(24844184-24844240)
chr3 (319-374)||(4843497-4843552)
chr3 (319-374)||(4869192-4869247)
chr3 (324-376)||(15791924-15791976)
[»] scaffold1571 (1 HSPs)
scaffold1571 (319-376)||(48-105)
[»] chr4 (11 HSPs)
chr4 (319-376)||(7533592-7533649)
chr4 (319-376)||(7535425-7535482)
chr4 (20-302)||(2281811-2282093)
chr4 (319-408)||(45029844-45029933)
chr4 (319-374)||(16075484-16075539)
chr4 (319-374)||(45030889-45030944)
chr4 (319-373)||(2093738-2093792)
chr4 (319-364)||(30707473-30707518)
chr4 (319-365)||(46118316-46118362)
chr4 (319-365)||(46131450-46131496)
chr4 (335-376)||(34739907-34739948)
[»] scaffold1147 (1 HSPs)
scaffold1147 (319-375)||(2463-2519)
[»] scaffold0850 (2 HSPs)
scaffold0850 (318-376)||(4642-4700)
scaffold0850 (319-375)||(1454-1510)
[»] scaffold0027 (2 HSPs)
scaffold0027 (319-374)||(51434-51489)
scaffold0027 (321-376)||(52591-52646)
[»] scaffold0497 (2 HSPs)
scaffold0497 (319-408)||(1514-1603)
scaffold0497 (319-375)||(302-358)
[»] chr1 (7 HSPs)
chr1 (319-376)||(52304268-52304325)
chr1 (319-375)||(52305341-52305397)
chr1 (319-374)||(39404663-39404718)
chr1 (319-374)||(39406135-39406190)
chr1 (30-179)||(32774347-32774496)
chr1 (159-298)||(4641137-4641276)
chr1 (319-374)||(38338290-38338345)
[»] chr5 (6 HSPs)
chr5 (319-376)||(2667800-2667857)
chr5 (319-374)||(14401329-14401384)
chr5 (319-373)||(2668938-2668991)
chr5 (55-152)||(36988748-36988845)
chr5 (335-376)||(11956158-11956199)
chr5 (335-376)||(41065654-41065695)
[»] scaffold0048 (2 HSPs)
scaffold0048 (319-375)||(50131-50187)
scaffold0048 (319-376)||(48939-48996)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 1479668 - 1479964
Alignment:
Q  8 ttttagagaccgcctcattataccaacactcaaattgcacacccaaattatgaggagtaataaaattaattccaaaccaatttaaaataaggcgacaaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||| | |||||    
T  1479668 ttttagagaccgcctcattataccaacactcaaattgcacatccaaattatgaggagtaataaaattaatcccaagccaatttaaaataaggtgccaaat 1479767  T
Q  108 taaagagaagatatcacaatgtaagaatagatgagtagatgtctcaacttccctcccacacaaaacacaaagtaaggacgcacccgggtcaaggatatgg 207  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1479768 taaagaggagacatcacaatgtaagaatagatgagtagatgtctcaacttccctcccacacaaaacacaaagtaaggatgcacccgggtcaaggatatgg 1479867  T
Q  208 cgaatggctagattttccctcgtaggaatgcgatcaagtaataacgaccaagagaaggccactactttggaaggagccggactattccaaagcaaag 304  Q
    |||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  1479868 cgaatggctagacttttcctcgtaggaatgcgatcaagtaataacaaccaagagaaggccactactttggaaggagccgaactcttccaaagcaaag 1479964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 33891662 - 33891607
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33891662 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagcccctgtaa 33891607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 374
Target Start/End: Original strand, 33890520 - 33890575
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  33890520 ttaatagtgtttttggcccctgtaatatagtgcgctttttgttttagtccctgtaa 33890575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 5583759 - 5583808
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtcc 368  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5583759 ttaatagtgtttttggccgctgtaatatagtgcacttttggttttagtcc 5583808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 19299815 - 19299758
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||    
T  19299815 ttaatagtgtttttagcccctgtaatatagagcacttttggttttagcccctgtaaaa 19299758  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 374
Target Start/End: Original strand, 12299974 - 12300029
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| | |||||||    
T  12299974 ttaatagtgtttttggcccctgtaatatagtgtacttttggttttaattcctgtaa 12300029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 319 - 408
Target Start/End: Complemental strand, 15553613 - 15553524
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaannnnnnnnnagattccacccttgaaaaatgaa 408  Q
    ||||||||||||||||| |||||||||| ||||| |||||||||||| |||||||| |         |||||||||||||||||||||||    
T  15553613 ttaatagtgtttttggctcctgtaatatggtgcatttttggttttagcccctgtaatatttttttttagattccacccttgaaaaatgaa 15553524  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 370
Target Start/End: Original strand, 19298569 - 19298620
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccct 370  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||| ||||    
T  19298569 ttaatagtgtttttggtccctgtaatatagtggacttttggttttagcccct 19298620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 12301181 - 12301124
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    |||||||||||||||||||||| ||||||| ||||||| |||||||  ||||||||||    
T  12301181 ttaatagtgtttttggcccctgcaatatagcgcactttcggttttaacccctgtaaaa 12301124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 408
Target Start/End: Complemental strand, 5583956 - 5583869
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaannnnnnnnnagattccacccttgaaaaatgaa 408  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||  | |||||||         |||||||||||||||||||||||    
T  5583956 ttaacagtgtttttggcccctgta--atagtgcacttttggttttagctcttgtaaaacttttttttagattccacccttgaaaaatgaa 5583869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 7577815 - 7577775
Alignment:
Q  335 cccctgtaatatagtgcacttttggttttagtccctgtaaa 375  Q
    |||||||||||||| |||||||||||||||  |||||||||    
T  7577815 cccctgtaatatagggcacttttggttttaccccctgtaaa 7577775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 9936254 - 9935970
Alignment:
Q  13 gagaccgcctcattataccaacactcaaattgcacacccaaattatgaggagtaataaaattaattccaaaccaatttaaaataaggcgacaaattaaag 112  Q
    |||||| ||||||||| |||||||||||| ||| ||  |||||||||||| ||||||||||| || || | |||||||||||||   || ||||||||||    
T  9936254 gagaccacctcattattccaacactcaaaatgcgcaaacaaattatgaggggtaataaaattcatcccgagccaatttaaaataccacgccaaattaaag 9936155  T
Q  113 agaagatatcacaatgtaagaatagatgagtagatgtctcaacttccctcccacacaaaacacaaagtaaggacgcacccgggtcaaggatatggcgaat 212  Q
    || ||| ||||||||| ||||| ||||| ||||| ||||||||   ||| |||||| ||||||||||||||||| ||||||  || | | |||| |||      
T  9936154 aggagacatcacaatgcaagaagagatgggtagaagtctcaacacaccttccacac-aaacacaaagtaaggacacacccgaatccaaggtatgtcgaga 9936056  T
Q  213 ggctagattttccctcgtaggaatgcgatcaagtaataacgaccaagagaaggccactactttggaaggagccggactattccaaa 298  Q
     || ||||| ||| |||||||||| |||||||| | ||  |||||| |||| |  ||||||||||||||||||||||| |||||||    
T  9936055 tgcaagattatccttcgtaggaatacgatcaagaagtagggaccaatagaatgtgactactttggaaggagccggactcttccaaa 9935970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 319 - 408
Target Start/End: Complemental strand, 16434602 - 16434513
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaannnnnnnnnagattccacccttgaaaaatgaa 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||         |||||||||||||||||||||||    
T  16434602 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagcccctgtaaaaaaaaaaattagattccacccttgaaaaatgaa 16434513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 32901633 - 32901575
Alignment:
Q  318 attaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  32901633 attaatagtgtttttgacccctgtaatatagtgcacttttggttttagcccctgtaaaa 32901575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 33586550 - 33586494
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaa 375  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  33586550 ttaatagtgtttttggtccctgtaatatagtgcacttttggttttagcccctgtaaa 33586494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 38574739 - 38574685
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgta 373  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  38574739 ttaatagtgtttttggcccctgtaatatagtgtacttttggttttagcccctgta 38574685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 41119 - 41062
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  41119 ttaatagtgtttttggcccctctaatatagtgcacttttagttttagcccctgtaaaa 41062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 8304232 - 8304177
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  8304232 ttaatagtgtttttggtccctgtaatatagtgcacttttgattttagcccctgtaa 8304177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 16432613 - 16432670
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    ||||||||||||||| | |||||||||||||||||||||| |||||| ||||||||||    
T  16432613 ttaatagtgtttttgactcctgtaatatagtgcacttttgattttagcccctgtaaaa 16432670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 38573636 - 38573693
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| | ||||||||||    
T  38573636 ttaatagtgtttttgacccctgtaatatagtgcacttttgatttttgcccctgtaaaa 38573693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 370
Target Start/End: Complemental strand, 30781057 - 30781006
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccct 370  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  30781057 ttaatagtgtttttggcccttgtaatatggtgcacttttggttttagcccct 30781006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 374
Target Start/End: Complemental strand, 44077382 - 44077335
Alignment:
Q  327 gtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||    
T  44077382 gtttttgatccctgtaatatagtgcacttttggttttagtccctgtaa 44077335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 8302984 - 8303034
Alignment:
Q  319 ttaatagtgtttttggcccc-tgtaatatagtgcacttttggttttagtcc 368  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  8302984 ttaatagtgtttttggccccctataatatagtgcacttttggttttagtcc 8303034  T

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Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Original strand, 7690239 - 7690288
Alignment:
Q  326 tgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaa 375  Q
    |||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  7690239 tgtttttggctcctgtaatatagtgcacttttggttttagcccttgtaaa 7690288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 298
Target Start/End: Complemental strand, 8273648 - 8273411
Alignment:
Q  61 ggagtaataaaattaattccaaaccaatttaaaataaggcgacaaattaaagagaagatatcacaatgtaagaatagatgagtagatgtctcaacttccc 160  Q
    |||||||||||||| ||  |||||||||| ||||||   || |||||||| |||   | |||| |||| ||||| ||||| |||||||||||||| | ||    
T  8273648 ggagtaataaaattgatctcaaaccaattcaaaataccacgtcaaattaacgaggtcacatcaaaatgcaagaaaagatgcgtagatgtctcaacatgcc 8273549  T
Q  161 tcccacacaaaacacaaagtaaggacgcacccgggtcaaggatatggcgaatggctagattttccctcgtaggaatgcgatcaagtaataacgaccaaga 260  Q
    |  ||||||| |||||||| |  || |   |||| |  |  ||||| |||||  | |||||| |||| |||||||| |||||||| | ||| |||||| |    
T  8273548 tatcacacaagacacaaaggagcgaagattccggatttaaaatatgtcgaatatcaagatttgcccttgtaggaatacgatcaaggagtaaagaccaaaa 8273449  T
Q  261 gaaggccactactttggaaggagccggactattccaaa 298  Q
    ||| ||||| |||||||| |||||||| || |||||||    
T  8273448 gaatgccaccactttggacggagccgggctcttccaaa 8273411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 364
Target Start/End: Original strand, 32900393 - 32900438
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggtttta 364  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||    
T  32900393 ttaatagtgtttttgtcccctgtaatatagcgcacttttgatttta 32900438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 30779873 - 30779928
Alignment:
Q  318 attaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    |||||||||||||||||||| |||||||| ||| |||||||||||||| || |||||    
T  30779873 attaatagtgtttttggccc-tgtaatatggtgtacttttggttttagcccttgtaa 30779928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Original strand, 27163135 - 27163176
Alignment:
Q  335 cccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    |||||||||||||| |||||||||||||| | ||||||||||    
T  27163135 cccctgtaatatagggcacttttggttttggcccctgtaaaa 27163176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 42460328 - 42460612
Alignment:
Q  13 gagaccgcctcattataccaacactcaaattgcacacccaaattatgaggagtaataaaattaattccaaaccaatttaaaataaggcgacaaattaaag 112  Q
    |||||| ||||||||| |||||||||||| ||| ||  |||||||||||| ||||||||||| ||||| | ||||||| |||||   || ||||||||||    
T  42460328 gagaccacctcattattccaacactcaaaatgcgcaaacaaattatgaggggtaataaaattcattccgagccaattt-aaataccacgccaaattaaag 42460426  T
Q  113 agaagatatcacaatgtaagaatagatgagtagatgtctcaacttccctcccacacaaaacacaaagtaaggacgcacccgggtcaaggatatggcgaat 212  Q
    || ||| ||||||||| || || || || ||||| ||||||||   | | |||||||||||||||||||||||||||| ||  || |  || || ||||     
T  42460427 aggagaaatcacaatgcaaaaagaggtgggtagaagtctcaacacacattccacacaaaacacaaagtaaggacgcactcgaatccaaaatgtgacgaaa 42460526  T
Q  213 ggctagattttccctcgtaggaatgcgatcaagtaataacgaccaagagaaggccactactttggaaggagccggactattccaaa 298  Q
     || ||||| ||| |||||||||||| |||||| | ||  | ||||||||| | |||||||||||||||||||||||| |||||||    
T  42460527 tgcgagattatccttcgtaggaatgcaatcaaggagtagtgcccaagagaacgtcactactttggaaggagccggactcttccaaa 42460612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 31430947 - 31431004
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31430947 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagcccctgtaaaa 31431004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 25491211 - 25491155
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaa 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25491211 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagcccctgtaaa 25491155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 319 - 408
Target Start/End: Original strand, 17237330 - 17237419
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaannnnnnnnnagattccacccttgaaaaatgaa 408  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||         ||||| |||||||||||||||||    
T  17237330 ttaatagtatttttggcccctgtaatatagtgcacttttggttttagcccctgtaaaaaaaaaatttagatttcacccttgaaaaatgaa 17237419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 25489921 - 25489978
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  25489921 ttaatagtgtttttgacccctgtaatatagtgcacttttggttttagcccctgtaaaa 25489978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 9119043 - 9118991
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctg 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9119043 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagcccctg 9118991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 31433694 - 31433638
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaa 375  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  31433694 ttaatagtgtttttggcctctgtaatatagtgcacttttggttttagcccctgtaaa 31433638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 370
Target Start/End: Complemental strand, 25275563 - 25275512
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccct 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25275563 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagcccct 25275512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 374
Target Start/End: Original strand, 37413721 - 37413776
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  37413721 ttaatagtgcttttggcccctgtaatatagtgcacttttagttttagtccctgtaa 37413776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 9113277 - 9113334
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||    
T  9113277 ttaatagtgtttttggcccctgcagtatagtgcacttttggttttagtccttgtaaaa 9113334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 17238341 - 17238284
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  17238341 ttaatattgtttttggcccctgtaatataatgcacttttggttttagcccctgtaaaa 17238284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 25274661 - 25274717
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaa 375  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||    
T  25274661 ttaatagtgtttttggcccctgtaatatagtgcacttttagttttaacccctgtaaa 25274717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 31432517 - 31432573
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaa 375  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| || ||||||    
T  31432517 ttaataatgtttttggcccctgtaatatagtgcacttttggttttagcccttgtaaa 31432573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 47497554 - 47497498
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaa 375  Q
    |||||||||||||||||| || ||||||||||||||||||||||||| | |||||||    
T  47497554 ttaatagtgtttttggcctctataatatagtgcacttttggttttagcctctgtaaa 47497498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 374
Target Start/End: Original strand, 48909025 - 48909080
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||  |||||||    
T  48909025 ttaatattatttttggcccctgtaatatagtgcacttttggttttagcacctgtaa 48909080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 48909813 - 48909757
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaa 375  Q
    |||||||||||||||  | ||||||||||||| |||||||||||||| |||||||||    
T  48909813 ttaatagtgtttttgatctctgtaatatagtgtacttttggttttagcccctgtaaa 48909757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 365
Target Start/End: Original strand, 43100510 - 43100549
Alignment:
Q  326 tgtttttggcccctgtaatatagtgcacttttggttttag 365  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  43100510 tgtttttggccgctgtaatatagtgcacttttgattttag 43100549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 364
Target Start/End: Original strand, 47496566 - 47496610
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggtttta 364  Q
    ||||||||||||||| |||||||||||||||| ||||||| |||||    
T  47496566 ttaatagtgtttttg-cccctgtaatatagtgtacttttgatttta 47496610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 299
Target Start/End: Complemental strand, 1034160 - 1033871
Alignment:
Q  10 ttagagaccgcctcattataccaacactcaaattgcacacccaaattatgaggagtaataaaattaattccaaaccaatttaaaataaggcgacaaatta 109  Q
    ||||| ||| ||||||||  |||||| |||||||| ||  |||| ||||| ||||||||||| ||||  |||| | ||||||||||    || |||||||    
T  1034160 ttagaaaccacctcattactccaacattcaaattgtacggccaagttatgtggagtaataaagttaaccccaagctaatttaaaattccacgccaaatta 1034061  T
Q  110 aagagaagatatcacaatgtaagaatagatgagtagatgtctcaacttccctcccacacaaaacacaaagtaaggacgcacccgggtcaaggatatggcg 209  Q
    | ||| ||| ||||||||| || || ||||| ||||||||||| || | |||||| ||||| |||||||| |  ||| || || ||||||| ||||| ||    
T  1034060 aggaggagacatcacaatgcaaaaagagatgggtagatgtctccaccttcctcccgcacaagacacaaagcatagacacatccaggtcaagaatatgacg 1033961  T
Q  210 aatggctagattttccctcgtaggaatgcgatcaagtaataacgaccaagagaaggccactactttggaaggagccggactattccaaag 299  Q
    || ||||||||| ||||||   ||||| |||||||| |  || ||||||||||| ||||| |||||||||||||||||||| ||||||||    
T  1033960 aagggctagattatccctccagggaatacgatcaaggagcaaggaccaagagaacgccacaactttggaaggagccggactcttccaaag 1033871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 298
Target Start/End: Original strand, 2921204 - 2921447
Alignment:
Q  55 ttatgaggagtaataaaattaattccaaaccaatttaaaataaggcgacaaattaaagagaagatatcacaatgtaagaatagatgagtagatgtctcaa 154  Q
    ||||||||||||||||| ||||| || | |||||| |||||| | || || |||||  || | | |||||||||||||||||| || |||||||| ||      
T  2921204 ttatgaggagtaataaagttaatccctagccaattcaaaatacgacgccagattaagaaggaaacatcacaatgtaagaataggtgggtagatgtttccg 2921303  T
Q  155 cttccctcccacacaaaacacaaagtaaggacgcacccgggtcaaggatatggcgaatggctagattttccctcgtaggaatgcgatcaagtaataacga 254  Q
        ||| |||||||||||||||||    ||| || ||||  | | ||||||||||||||| |||||  | || || || || |||||||| | ||| ||    
T  2921304 gccgccttccacacaaaacacaaagaggagactcatccggagccaagatatggcgaatggcgagattaactctagtggggattcgatcaagaagtaaaga 2921403  T
Q  255 ccaagagaaggccactactttggaaggagccggactattccaaa 298  Q
    ||||||||||||||||||||| || ||||||||||| |||||||    
T  2921404 ccaagagaaggccactactttagacggagccggactcttccaaa 2921447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 374
Target Start/End: Original strand, 34021795 - 34021850
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  34021795 ttaatagtgtttttggcccctgtaatatagtgcactattggttttagttcctgtaa 34021850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 1756058 - 1756115
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||||| ||||||||||    
T  1756058 ttaatagtgtttctggcccctgtaatatggtgcactttcggttttagcccctgtaaaa 1756115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 364
Target Start/End: Complemental strand, 34022856 - 34022812
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggtttta 364  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  34022856 ttaatagtgtttttg-cccctgtaatatagtgcacttttggtttta 34022812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 319 - 408
Target Start/End: Complemental strand, 16386645 - 16386556
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaannnnnnnnnagattccacccttgaaaaatgaa 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||         |||||||||||||||||||||||    
T  16386645 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagcccctgtaaaaaaaaaaattagattccacccttgaaaaatgaa 16386556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 374
Target Start/End: Original strand, 24842824 - 24842879
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24842824 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagcccctgtaa 24842879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 22896535 - 22896478
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  22896535 ttaatagtgtttttgacccctgtaatatagtgcacttttggttttagcccctgtaaaa 22896478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 54204349 - 54204405
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaa 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  54204349 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagcccctataaa 54204405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 374
Target Start/End: Original strand, 22895401 - 22895456
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  22895401 ttaatagtgtttttgacccctgtaatatagtgcacttttggttttagcccctgtaa 22895456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 24844240 - 24844184
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaa 375  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||    
T  24844240 ttaatagtgtttttggcccttgtaatatagtgcacttttggttttagcctctgtaaa 24844184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 4843552 - 4843497
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    ||||||||||||||||||  ||||||||| ||||||||||||||||| ||||||||    
T  4843552 ttaatagtgtttttggcctttgtaatataatgcacttttggttttagcccctgtaa 4843497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 4869247 - 4869192
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    ||||||||||||||||||  ||||||||| ||||||||||||||||| ||||||||    
T  4869247 ttaatagtgtttttggcctttgtaatataatgcacttttggttttagcccctgtaa 4869192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 15791976 - 15791924
Alignment:
Q  324 agtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    |||||||||| |||||||||||| ||||| ||||| |||||  ||||||||||    
T  15791976 agtgtttttgacccctgtaatatggtgcatttttgattttaacccctgtaaaa 15791924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1571 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold1571
Description:

Target: scaffold1571; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 48 - 105
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagcccctgtaaaa 105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 7533592 - 7533649
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7533592 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagcccctgtaaaa 7533649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 7535482 - 7535425
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7535482 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagcccctgtaaaa 7535425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 2282093 - 2281811
Alignment:
Q  20 cctcattataccaacactcaaattgcacacccaaattatgaggagtaataaaattaattccaaaccaatttaaaataaggcgacaaattaaagagaagat 119  Q
    ||||||||| | |||| ||||||||||||  ||||||||||||||| |||||||| ||||| | ||||||||||||  | || ||||||   ||| |||     
T  2282093 cctcattattctaacaatcaaattgcacaaacaaattatgaggagtgataaaattgattccgagccaatttaaaatccgacgccaaatttgtgaggagac 2281994  T
Q  120 atcacaatgtaagaatagatgagtagatgtctcaacttccctcccacacaaaacacaaagtaaggacgcacccgggtcaaggatatggcgaatggctaga 219  Q
    |||||||||||| || || |||||||  |||||  |   ||| ||||||||| ||||||| ||||| || ||| | || || ||||| || |  || |||    
T  2281993 atcacaatgtaaaaagaggtgagtaggcgtctcggcactccttccacacaaagcacaaagcaaggaagctcccagatcgagtatatgacggaatgcaaga 2281894  T
Q  220 ttttccctcgtaggaatgcgatcaagtaataacgaccaagagaaggccactactttggaaggagccggactattccaaagcaa 302  Q
    || ||||| || ||||| ||  |||| |  |  |||||||||||  ||||||||||||| |||| |||||| |||||||||||    
T  2281893 ttatcccttgttggaatacgcccaaggagaagagaccaagagaacaccactactttggatggagtcggactcttccaaagcaa 2281811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 319 - 408
Target Start/End: Original strand, 45029844 - 45029933
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaannnnnnnnnagattccacccttgaaaaatgaa 408  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| |  |||||||         |||||||||||||||||||||||    
T  45029844 ttaatagtgtttttgacccctgtaatatagtgcacttttcgttttagcctttgtaaaaaaaaaaattagattccacccttgaaaaatgaa 45029933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 374
Target Start/End: Original strand, 16075484 - 16075539
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    |||| ||||||||||||||||| |||||| ||||||||||||||||| ||||||||    
T  16075484 ttaacagtgtttttggcccctgcaatataatgcacttttggttttagcccctgtaa 16075539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 45030944 - 45030889
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||| ||||||||    
T  45030944 ttaacagtatttttggcccctgtaatatagtgcacttgtggttttagcccctgtaa 45030889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 2093792 - 2093738
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgta 373  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||    
T  2093792 ttaatagggtttttggtccctgtaatatagtgcaattttggttttagtctctgta 2093738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 364
Target Start/End: Complemental strand, 30707518 - 30707473
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggtttta 364  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||    
T  30707518 ttaatagtatttttggcccctataatatagtgcacttttggtttta 30707473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 46118316 - 46118362
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttag 365  Q
    ||||||||||||||   | ||||||||||||||||||||||||||||    
T  46118316 ttaatagtgttttttttctctgtaatatagtgcacttttggttttag 46118362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 46131450 - 46131496
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttag 365  Q
    ||||||||||||||   | ||||||||||||||||||||||||||||    
T  46131450 ttaatagtgttttttttctctgtaatatagtgcacttttggttttag 46131496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Original strand, 34739907 - 34739948
Alignment:
Q  335 cccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    |||||||||||||| |||||||||||||| | ||||||||||    
T  34739907 cccctgtaatatagggcacttttggttttggcccctgtaaaa 34739948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1147 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold1147
Description:

Target: scaffold1147; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 2463 - 2519
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaa 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2463 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagcccctgtaaa 2519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0850 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0850
Description:

Target: scaffold0850; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 4700 - 4642
Alignment:
Q  318 attaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  4700 attaatagtgtttttggcccttgtaatatagtgcacttttggttttagcccctgtaaaa 4642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0850; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 1454 - 1510
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaa 375  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  1454 ttaatagtgtttttggcccttgtaatatagtgcacttttggttttagcccctgtaaa 1510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 374
Target Start/End: Original strand, 51434 - 51489
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  51434 ttaatagtgtttttggcccctgtaatatagtgcacttttgattttagcccctgtaa 51489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 52646 - 52591
Alignment:
Q  321 aatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  52646 aatagtgtttttggcccctgtaatatagtgcacttttagttttagcccctgtaaaa 52591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 408
Target Start/End: Complemental strand, 1603 - 1514
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaannnnnnnnnagattccacccttgaaaaatgaa 408  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||          |||||||||||||||||||||||    
T  1603 ttaatagtgtttttggcccctgtaatatagagcaattttggttttagcccctgtaaattttttttttagattccacccttgaaaaatgaa 1514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 302 - 358
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaa 375  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  302 ttaatagtgtttttggcccctgtgatatagagcacttttggttttagcccctgtaaa 358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 52304268 - 52304325
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  52304268 ttaatagtatttttgacccctgtaatatagtgcacttttggttttagcccctgtaaaa 52304325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 52305397 - 52305341
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaa 375  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||    
T  52305397 ttaatagtgtttttgacccctgtaatatagtgcacttttggttttagccgctgtaaa 52305341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 374
Target Start/End: Original strand, 39404663 - 39404718
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  39404663 ttaatagtgtttttggcccctgtaatatggtgcacttttggttttagcccttgtaa 39404718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 39406190 - 39406135
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    |||||||||||||||||||||||||||| |||||||||||||||||  ||||||||    
T  39406190 ttaatagtgtttttggcccctgtaatatggtgcacttttggttttaacccctgtaa 39406135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 32774347 - 32774496
Alignment:
Q  30 ccaacactcaaattgcacacccaaattatgaggagtaataaaattaattccaaaccaatttaaaataaggcgacaaattaaagagaagatatcacaatgt 129  Q
    |||||| || ||||||| |  ||| ||||| ||||||| |||||||||  ||| |||||| || ||    || |||||||| ||| | | ||||||||||    
T  32774347 ccaacaatcgaattgcataaacaagttatgtggagtaacaaaattaatctcaagccaattcaatatgccacgccaaattaacgaggatacatcacaatgt 32774446  T
Q  130 aagaatagatgagtagatgtctcaacttccctcccacacaaaacacaaag 179  Q
    ||||| ||||||||||||||||| |||| ||||||||| || ||||||||    
T  32774447 aagaaaagatgagtagatgtctccacttgcctcccacataacacacaaag 32774496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 298
Target Start/End: Original strand, 4641137 - 4641276
Alignment:
Q  159 cctcccacacaaaacacaaagtaaggacgcacccgggtcaaggatatggcgaatggctagattttccctcgtaggaatgcgatcaagtaataacgaccaa 258  Q
    ||||||||||| ||||||||| | ||||||| |||| || | |||||||||||  || ||||| || ||||| ||||| |||||||| | ||| ||| |     
T  4641137 cctcccacacataacacaaagaagggacgcatccggatctaagatatggcgaagcgcaagattgtctctcgtcggaatacgatcaaggagtaaggacaat 4641236  T
Q  259 gagaaggccactactttggaaggagccggactattccaaa 298  Q
    ||||| |||||||| || || ||| ||||||| |||||||    
T  4641237 gagaacgccactacctttgatggacccggactcttccaaa 4641276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 38338345 - 38338290
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    |||||||||||||||| |||||||||||| ||||| ||||||||||  ||||||||    
T  38338345 ttaatagtgtttttgggccctgtaatataatgcacatttggttttaacccctgtaa 38338290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 2667800 - 2667857
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    ||||||||||||||| | ||||||||||||||||||||| |||||| |||||||||||    
T  2667800 ttaatagtgtttttgcctcctgtaatatagtgcactttttgttttattccctgtaaaa 2667857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 374
Target Start/End: Original strand, 14401329 - 14401384
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaa 374  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||| || |||||    
T  14401329 ttaatagtgattttggcccctgtaatatagtgaacttttggttttagcccttgtaa 14401384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 2668991 - 2668938
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgta 373  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  2668991 ttaatagtgtttttgacccctgtaatatagtgcac-tttggttttagcccctgta 2668938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 36988845 - 36988748
Alignment:
Q  55 ttatgaggagtaataaaattaattccaaaccaatttaaaataaggcgacaaattaaagagaagatatcacaatgtaagaatagatgagtagatgtctc 152  Q
    ||||| ||||| |||||||||||  | |||||||| |||||  |||| ||||| |||||| | |||||||||||||| |||| ||| |||||||||||    
T  36988845 ttatgtggagtgataaaattaatctccaaccaattcaaaatccggcgccaaatcaaagaggaaatatcacaatgtaaaaataaatgtgtagatgtctc 36988748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Original strand, 11956158 - 11956199
Alignment:
Q  335 cccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    |||||||||||||| |||||||||||||| | ||||||||||    
T  11956158 cccctgtaatatagggcacttttggttttggcccctgtaaaa 11956199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 41065695 - 41065654
Alignment:
Q  335 cccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    |||||||||||||| |||||||||||||| | ||||||||||    
T  41065695 cccctgtaatatagggcacttttggttttggcccctgtaaaa 41065654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 50187 - 50131
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaa 375  Q
    |||||| |||||||||||| |||||||| ||| |||||||||||||| || ||||||    
T  50187 ttaataatgtttttggcccttgtaatatggtggacttttggttttagcccttgtaaa 50131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 48939 - 48996
Alignment:
Q  319 ttaatagtgtttttggcccctgtaatatagtgcacttttggttttagtccctgtaaaa 376  Q
    |||||||||||| ||||||| ||||||| ||| ||||||||| |||| |||| |||||    
T  48939 ttaatagtgtttctggccccagtaatatggtgtacttttggtattagcccctataaaa 48996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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