View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4944_high_1 (Length: 477)
Name: NF4944_high_1
Description: NF4944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4944_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 112 - 467
Target Start/End: Complemental strand, 8236019 - 8235664
Alignment:
| Q |
112 |
tcttgaataaaaaatattttctttgtacnnnnnnntttgttactttgtttatgcgtcatctatttcaattatagttgaaccgattgatttatttaaacaa |
211 |
Q |
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| T |
8236019 |
tcttgaataaaaaatattttctttgtacaaaaaaatttgttactttgtttatgcgtcatctatttcaattatagttgaaccaattgatttatttaaacaa |
8235920 |
T |
|
| Q |
212 |
cgacttagagagatctgatcgtgtcgatttcaactcctcttttaaaaacattgctatagatggatggtttccttgcaataatttaattttcttttcaaga |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8235919 |
cgacttagagagatctgatcgtgtcgatttcaactcctcttttaaaaacattgctatagatagatggtttccttgcaataatttaattttcttttcaaga |
8235820 |
T |
|
| Q |
312 |
atgcgttgatttgtttcttctgcatctaaatgatcaaagaatatatattttgtagtccaaacaacaaatatggatcaaaagacacaagtgaaaccagagg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8235819 |
atgcgttgatttgtttcttctgcatctaaatgatcaaagaatatatattttgtagtccaaacaacaaatatggatcaaaagacacaagtgaaaccagagg |
8235720 |
T |
|
| Q |
412 |
aaagaaggaatgatacaccaacacaaaatcaaatagtgtcagtgtctcgccctttg |
467 |
Q |
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| T |
8235719 |
aaagaaggaatgatacacaaacacaaaatcaaatagtgtcagtgtctcgccctttg |
8235664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 151 - 399
Target Start/End: Complemental strand, 8447891 - 8447645
Alignment:
| Q |
151 |
ttactttgtttatgcgtcatctatttcaattatagttgaaccgattgatttatttaaacaacgacttagagagatctgatcgtgtcgatttcaactcctc |
250 |
Q |
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| T |
8447891 |
ttactttgtttatttgtcatttagttcaattatagttgaactggttaaattatttaaagtaggacttagagactt--gatcggttcgatttcaattcctc |
8447794 |
T |
|
| Q |
251 |
ttttaaaaacattgctatagatggatggtttccttgcaataatttaattttcttttcaagaatgcgttgatttgtttcttctgcatctaaatgatcaaag |
350 |
Q |
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|||| |||||||| || || || |||||||||||| |||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||||||||| |
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| T |
8447793 |
tttttaaaacatttctgtatattgatggtttcctttcaataatttaattttcttgtcaagaatgttttaatttgtttcttctgcatataaatgatcaaag |
8447694 |
T |
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| Q |
351 |
aatatatattttgtagtcca-aacaacaaatatggatcaaaagacacaag |
399 |
Q |
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| T |
8447693 |
aatatatattttgtagtccataataac-aacatggatcaaaagacacaag |
8447645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 8236113 - 8236064
Alignment:
| Q |
18 |
catacatgttgtttcatggacaaccaaaagtatttgaggagttcaatcta |
67 |
Q |
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| T |
8236113 |
catacatgttgtttcatggacaaccaaaagtatttgaggagttcaatcta |
8236064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 35718442 - 35718474
Alignment:
| Q |
166 |
gtcatctatttcaattatagttgaaccgattga |
198 |
Q |
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| T |
35718442 |
gtcatctatttcaactatagttgaaccgattga |
35718474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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