View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4944_low_3 (Length: 310)

Name: NF4944_low_3
Description: NF4944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4944_low_3
NF4944_low_3
[»] chr3 (1 HSPs)
chr3 (1-300)||(55300782-55301081)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 55300782 - 55301081
Alignment:
Q  1 cacaagcaactttggagaagatggacgacggtagtgacgatgttgaaggcgggaagcctttgagggttaattatgaatcagaaactattccagagaaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55300782 cacaagcaactttggagaagatggacgacggtagtgacgatgttgaaggcgggaagcctttgagggttaattatgaatcagaaactattccagagaaaac 55300881  T
Q  101 aattttgtgtgacgatgttgtgttgttggttgaagagcattagagaaagcatttgagggagagagtaacatcaaattcggagacagtattgtcacaacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55300882 aattttgtgtgacgatgttgtgttgttggttgaagagcataagagaaagcctttgagggagagagtaacatcaaattcggagacagtattgtcacaacaa 55300981  T
Q  201 gaaaatgctgacaaaacagatttgggtatggaggaggagatggaattggtgatgattgaacaagagaagccattgagagagagtcgtgcgtcacaagttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55300982 gaaaatgctgacaaaacagatttgggtatggaggaggagatggaattggtgatgattgaacaagagaagccattgagagagagtcgtgcgtcacaagttg 55301081  T

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