View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4945-Insertion-1 (Length: 755)

Name: NF4945-Insertion-1
Description: NF4945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4945-Insertion-1
NF4945-Insertion-1
[»] scaffold0259 (1 HSPs)
scaffold0259 (693-755)||(2483-2545)
[»] scaffold0197 (2 HSPs)
scaffold0197 (694-755)||(19397-19458)
scaffold0197 (694-755)||(14542-14603)
[»] scaffold0028 (1 HSPs)
scaffold0028 (694-755)||(149188-149249)
[»] chr3 (11 HSPs)
chr3 (694-755)||(8512007-8512068)
chr3 (694-755)||(8516887-8516948)
chr3 (693-755)||(32475275-32475337)
chr3 (694-755)||(10207725-10207786)
chr3 (694-755)||(2673164-2673226)
chr3 (694-755)||(2677320-2677382)
chr3 (694-744)||(32480133-32480183)
chr3 (413-537)||(49455062-49455186)
chr3 (419-537)||(20695958-20696076)
chr3 (476-546)||(20137139-20137209)
chr3 (415-547)||(26476476-26476609)
[»] chr7 (9 HSPs)
chr7 (693-755)||(24266435-24266497)
chr7 (694-755)||(16879864-16879925)
chr7 (694-755)||(16884720-16884781)
chr7 (45-238)||(37606815-37607008)
chr7 (694-755)||(24261556-24261617)
chr7 (233-333)||(33318707-33318807)
chr7 (694-755)||(19992104-19992165)
chr7 (694-755)||(21812471-21812532)
chr7 (419-545)||(44162899-44163025)
[»] chr5 (11 HSPs)
chr5 (693-755)||(2785166-2785228)
chr5 (694-755)||(31397225-31397286)
chr5 (694-755)||(31402082-31402143)
chr5 (694-755)||(33767971-33768032)
chr5 (694-755)||(33791108-33791169)
chr5 (694-755)||(28807807-28807868)
chr5 (689-755)||(37561678-37561745)
chr5 (420-526)||(31914488-31914594)
chr5 (694-755)||(37556856-37556918)
chr5 (419-537)||(40085253-40085371)
chr5 (413-546)||(18023283-18023416)
[»] scaffold0009 (1 HSPs)
scaffold0009 (694-755)||(182197-182258)
[»] chr8 (6 HSPs)
chr8 (694-755)||(10684497-10684558)
chr8 (694-755)||(35745183-35745244)
chr8 (418-531)||(13310131-13310244)
chr8 (419-531)||(17991980-17992092)
chr8 (419-532)||(4902109-4902222)
chr8 (413-531)||(25660204-25660322)
[»] chr6 (6 HSPs)
chr6 (694-755)||(5343272-5343333)
chr6 (694-755)||(33336176-33336237)
chr6 (693-755)||(16838535-16838597)
chr6 (694-755)||(6005209-6005270)
chr6 (694-755)||(33330679-33330740)
chr6 (419-495)||(10574426-10574502)
[»] chr1 (7 HSPs)
chr1 (694-755)||(43988698-43988759)
chr1 (30-238)||(42449971-42450179)
chr1 (420-547)||(7953253-7953380)
chr1 (694-755)||(25445322-25445382)
chr1 (694-755)||(39445292-39445352)
chr1 (419-546)||(24615789-24615916)
chr1 (694-755)||(1055244-1055304)
[»] scaffold0777 (1 HSPs)
scaffold0777 (694-742)||(6293-6341)
[»] chr4 (4 HSPs)
chr4 (362-397)||(13852809-13852844)
chr4 (470-532)||(47550853-47550915)
chr4 (682-755)||(18855507-18855579)
chr4 (694-755)||(3813816-3813876)
[»] chr2 (5 HSPs)
chr2 (693-755)||(19344211-19344273)
chr2 (694-755)||(19349070-19349131)
chr2 (694-755)||(32246577-32246637)
chr2 (446-519)||(38969269-38969342)
chr2 (422-519)||(44515140-44515237)
[»] scaffold0464 (1 HSPs)
scaffold0464 (694-755)||(155-215)


Alignment Details
Target: scaffold0259 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 693 - 755
Target Start/End: Complemental strand, 2545 - 2483
Alignment:
Q  693 atgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2545 atgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 2483  T

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Target: scaffold0197 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 19458 - 19397
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19458 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 19397  T

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Target: scaffold0197; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 14603 - 14542
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  14603 tgttgtgaatccggttcaactaatgaaccttcacaccaatgagaataaatcaaagatgtgtg 14542  T

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Target: scaffold0028 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 149249 - 149188
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  149249 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 149188  T

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Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 694 - 755
Target Start/End: Original strand, 8512007 - 8512068
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8512007 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 8512068  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 694 - 755
Target Start/End: Original strand, 8516887 - 8516948
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8516887 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 8516948  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 693 - 755
Target Start/End: Original strand, 32475275 - 32475337
Alignment:
Q  693 atgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32475275 atgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaaagatgtgtg 32475337  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 694 - 755
Target Start/End: Original strand, 10207725 - 10207786
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10207725 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaaccaatgatgtgtg 10207786  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 2673226 - 2673164
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaa-ccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  2673226 tgttgtgaatccggctcaactaatgaaaccttcacaccaatgagaataaaccaatgatgtgtg 2673164  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 2677382 - 2677320
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaa-ccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  2677382 tgttgtgaatccggctcaactaatgaaaccttcacaccaatgagaataaaccaatgatgtgtg 2677320  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 694 - 744
Target Start/End: Original strand, 32480133 - 32480183
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatc 744  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32480133 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatc 32480183  T

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Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 413 - 537
Target Start/End: Complemental strand, 49455186 - 49455062
Alignment:
Q  413 gctagtggatccccttgcttaagacctctttgaatactaatttcctccgtaggacacccattgacaagaatcaacatacttcctccaaatacacaggctt 512  Q
    |||| |||||||||||| |||||||| | ||| ||||||||||||||||| ||| ||||||| ||||||||  |||||||||||||| | ||| | || |    
T  49455186 gctaatggatccccttgtttaagaccccgttgtatactaatttcctccgttggagacccattaacaagaatagacatacttcctccacacacataagcct 49455087  T
Q  513 tcatccacgccacccacttatcaca 537  Q
    |||||||   ||||||||| |||||    
T  49455086 tcatccaattcacccacttctcaca 49455062  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 419 - 537
Target Start/End: Complemental strand, 20696076 - 20695958
Alignment:
Q  419 ggatccccttgcttaagacctctttgaatactaatttcctccgtaggacacccattgacaagaatcaacatacttcctccaaatacacaggctttcatcc 518  Q
    ||||| ||||| ||||| ||||||||||||| ||| |||||||| || |  ||||| ||||||||  ||||||| |||||||| ||||| |  |||||||    
T  20696076 ggatcaccttgtttaaggcctctttgaatacaaatctcctccgttgggcttccattaacaagaatagacatactccctccaaacacacaagtcttcatcc 20695977  T
Q  519 acgccacccacttatcaca 537  Q
    | ||||||||||| |||||    
T  20695976 aagccacccacttctcaca 20695958  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 476 - 546
Target Start/End: Complemental strand, 20137209 - 20137139
Alignment:
Q  476 acaagaatcaacatacttcctccaaatacacaggctttcatccacgccacccacttatcacataaccccac 546  Q
    ||||||||  ||||| | |||||||||||||| ||||||||||||  |||||| || ||||| ||||||||    
T  20137209 acaagaatagacatattacctccaaatacacaagctttcatccacctcacccatttctcacacaaccccac 20137139  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 415 - 547
Target Start/End: Original strand, 26476476 - 26476609
Alignment:
Q  415 tagtggatccccttgctt-aagacctctttgaatactaatttcctccgtaggacacccattgacaagaatcaacatacttcctccaaatacacaggcttt 513  Q
    ||||||||| ||||| || ||| ||||||||||||||||||||||  ||||||  |||||| ||||| ||  | ||| | |||| ||| ||||| || ||    
T  26476476 tagtggatcaccttgttttaaggcctctttgaatactaatttcctatgtaggagtcccattcacaagtatagaaatattacctcaaaacacacaagcctt 26476575  T
Q  514 catccacgccacccacttatcacataaccccact 547  Q
    |||   | |||||||||||| ||| |||||||||    
T  26476576 catatgctccacccacttattacaaaaccccact 26476609  T

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Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 693 - 755
Target Start/End: Complemental strand, 24266497 - 24266435
Alignment:
Q  693 atgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24266497 atgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaaagatgtgtg 24266435  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 694 - 755
Target Start/End: Original strand, 16879864 - 16879925
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16879864 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaaagatgtgtg 16879925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 694 - 755
Target Start/End: Original strand, 16884720 - 16884781
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16884720 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaaagatgtgtg 16884781  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 45 - 238
Target Start/End: Complemental strand, 37607008 - 37606815
Alignment:
Q  45 gtctcaatcaacggttcccaagtcaccatgctcctcggattggctcccaccggaagacccaaatatttgaaaggaattgagcccgcaatacaattcaaaa 144  Q
    ||||| ||||| ||||||||||||  ||| |||||  |||| |||||||||| ||||||||| ||||||||||||||    || ||| ||||||||||||    
T  37607008 gtctctatcaaaggttcccaagtcgacatactcctttgatttgctcccaccgaaagacccaagtatttgaaaggaatacctccggcactacaattcaaaa 37606909  T
Q  145 tatcacatgccatcaacgtaaactcttccctaatgttaacccctatcaatgagctcttggagaaattaatcttcaaacccgacgccatttcaaa 238  Q
      ||||||||| |   | ||||||| || ||||  || ||||| ||||| ||||| ||||||||||| |||||||||||||| ||||| |||||    
T  37606908 agtcacatgcccttgccataaactcatcactaacattcaccccaatcaaagagcttttggagaaatttatcttcaaacccgaagccatctcaaa 37606815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 24261617 - 24261556
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  24261617 tgttgtgaatccggttcaactaatgaaccttcacaccaatgagaataaatcaaagatgtgtg 24261556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 33318807 - 33318707
Alignment:
Q  233 ttcaaagtccgaagattttgaatcgaagccttcccaatgcaaagattgtcgtcggcatattgcaagtgtgaaaccaccaagtccttaccgccaaaatcaa 332  Q
    |||| ||||| ||||||||||| |||||||||||||||||||||  | || |||||||||||||| || ||||||||||| || ||||| | ||||||||    
T  33318807 ttcatagtccaaagattttgaaccgaagccttcccaatgcaaagcgtatcatcggcatattgcaaatgggaaaccaccaaatcattacctctaaaatcaa 33318708  T
Q  333 a 333  Q
    |    
T  33318707 a 33318707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 755
Target Start/End: Original strand, 19992104 - 19992165
Alignment:
Q  694 tgttgtgaatccggctcaactaat-gaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |||||| ||| ||||||||    
T  19992104 tgttgtgaatccggttcaactaatggaaccttcacaccaatga-aataaaccaaagatgtgtg 19992165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 21812532 - 21812471
Alignment:
Q  694 tgttgtgaatccggctcaactaatg-aaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||  |||||||||| ||||||||||||||||| |||||| ||| ||||||||    
T  21812532 tgttgtgaatccgattcaactaatgaaaccttcacaccaatga-aataaaccaaagatgtgtg 21812471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 419 - 545
Target Start/End: Complemental strand, 44163025 - 44162899
Alignment:
Q  419 ggatccccttgcttaagacctctttgaatactaatttcctccgtaggacacccattgacaagaatcaacatacttcctccaaatacacaggctttcatcc 518  Q
    ||||||||||| ||||| || ||||| ||| |||| |||||| | ||||  ||||| ||||||||  ||||||| |||||| | || || ||||||||||    
T  44163025 ggatccccttgtttaaggcccctttggatattaatctcctccattggacttccattcacaagaatagacatactccctccacacacgcaagctttcatcc 44162926  T
Q  519 acgccacccacttatcacataacccca 545  Q
    |   |||||| |||||||  |||||||    
T  44162925 aattcacccatttatcactaaacccca 44162899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 693 - 755
Target Start/End: Original strand, 2785166 - 2785228
Alignment:
Q  693 atgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2785166 atgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaaccaatgatgtgtg 2785228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 31397286 - 31397225
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31397286 tgttgtgaattcggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 31397225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 31402143 - 31402082
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31402143 tgttgtgaattcggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 31402082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 694 - 755
Target Start/End: Original strand, 33767971 - 33768032
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  33767971 tgttgtgaatccggctcaactaatgaaccttcacatcaatgagaataaaccaatgatgtgtg 33768032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 694 - 755
Target Start/End: Original strand, 33791108 - 33791169
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  33791108 tgttgtgaatccggctcaactaatgaaccttcacatcaatgagaataaaccaatgatgtgtg 33791169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 28807868 - 28807807
Alignment:
Q  694 tgttgtgaatccggctcaactaatg-aaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||| |||||||||| ||||||||||||||||| |||||| ||||||||||||    
T  28807868 tgttgtgaatccggttcaactaatgaaaccttcacaccaatga-aataaaccaatgatgtgtg 28807807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 689 - 755
Target Start/End: Complemental strand, 37561745 - 37561678
Alignment:
Q  689 aaaaatgttgtgaatccggctcaactaatgaa-ccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||| |||||||||||||| ||||||||| || ||||||||||||||| |||||| ||| ||||||||    
T  37561745 aaaactgttgtgaatccggttcaactaatcaaaccttcacaccaatgataataaaccaaagatgtgtg 37561678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 420 - 526
Target Start/End: Complemental strand, 31914594 - 31914488
Alignment:
Q  420 gatccccttgcttaagacctctttgaatactaatttcctccgtaggacacccattgacaagaatcaacatacttcctccaaatacacaggctttcatcca 519  Q
    ||||||||||||| || || ||||||||| |||| || | ||||||||  || |||||||||||  ||||||| ||||||||   ||| || ||||||||    
T  31914594 gatccccttgctttagccccctttgaatattaatctctttcgtaggacttccgttgacaagaatggacatactacctccaaaagtacaagccttcatcca 31914495  T
Q  520 cgccacc 526  Q
     ||||||    
T  31914494 agccacc 31914488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 37556918 - 37556856
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaac-cttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||| ||||||||| ||  |||||||||||||| |||||| ||| ||||||||    
T  37556918 tgttgtgaatccggttcaactaatcaaatcttcacaccaatgataataaaccaaagatgtgtg 37556856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 419 - 537
Target Start/End: Complemental strand, 40085371 - 40085253
Alignment:
Q  419 ggatccccttgcttaagacctctttgaatactaatttcctccgtaggacacccattgacaagaatcaacatacttcctccaaatacacaggctttcatcc 518  Q
    |||||||||||||||||||| |  |||||| ||||||||||||| || | |||||| ||||| |   |||||   || ||| | ||||| ||  ||||||    
T  40085371 ggatccccttgcttaagaccacggtgaatattaatttcctccgttgggctcccattcacaagcacggacatagaaccaccacacacacaagccctcatcc 40085272  T
Q  519 acgccacccacttatcaca 537  Q
    ||||||||||||| |||||    
T  40085271 acgccacccacttctcaca 40085253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 546
Target Start/End: Original strand, 18023283 - 18023416
Alignment:
Q  413 gctagtggatccccttgcttaagacctctttgaatactaatttcctccgtaggacacccattgacaagaatcaacatacttcctccaaatacacaggctt 512  Q
    |||| |||||| | |||||| | ||| |||||||||  |||||||||||| |||| |||||| ||||| ||  |||| || || ||||| ||||| || |    
T  18023283 gctaatggatctcattgctttaaacccctttgaatatcaatttcctccgttggactcccatttacaaggatagacatcctaccaccaaaaacacaagcct 18023382  T
Q  513 tcatccacgccacccacttatcacataaccccac 546  Q
    |||||||  ||||||| |||| ||| || |||||    
T  18023383 tcatccaaaccacccatttattacaaaaacccac 18023416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 182258 - 182197
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  182258 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaaagatgtgtg 182197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 10684558 - 10684497
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10684558 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaaagatgtgtg 10684497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 694 - 755
Target Start/End: Original strand, 35745183 - 35745244
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35745183 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaaccaatgatgtgtg 35745244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 418 - 531
Target Start/End: Complemental strand, 13310244 - 13310131
Alignment:
Q  418 tggatccccttgcttaagacctctttgaatactaatttcctccgtaggacacccattgacaagaatcaacatacttcctccaaatacacaggctttcatc 517  Q
    ||||||||||||||||| |||||| |||||| | ||||| | ||| || | |||||| ||||||||  ||||||| ||||||   ||||| || ||||||    
T  13310244 tggatccccttgcttaaaacctctatgaatattgatttctttcgtcgggctcccattcacaagaattgacatactacctccactaacacacgccttcatc 13310145  T
Q  518 cacgccacccactt 531  Q
     |||||||||||||    
T  13310144 tacgccacccactt 13310131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 419 - 531
Target Start/End: Original strand, 17991980 - 17992092
Alignment:
Q  419 ggatccccttgcttaagacctctttgaatactaatttcctccgtaggacacccattgacaagaatcaacatacttcctccaaatacacaggctttcatcc 518  Q
    ||||||||||| ||||| ||||  ||||| | ||| |||||||| ||||  ||||| ||||||||  ||||||| || | ||| ||||| ||||||||||    
T  17991980 ggatccccttgtttaaggcctcgatgaatgcaaatctcctccgttggactaccattcacaagaatggacatactcccacaaaaaacacaagctttcatcc 17992079  T
Q  519 acgccacccactt 531  Q
    | |||||||||||    
T  17992080 aagccacccactt 17992092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 532
Target Start/End: Complemental strand, 4902222 - 4902109
Alignment:
Q  419 ggatccccttgcttaagacctctttgaatactaatttcctccgtaggacacccattgacaagaatcaacatacttcctccaaatacacaggctttcatcc 518  Q
    ||||| |||||||||||||||||||| ||| |||| || ||||| || |  ||||||||||||||  ||||||| || ||| | |||||    |||||||    
T  4902222 ggatcaccttgcttaagacctctttggatattaatctcttccgtcgggctaccattgacaagaatagacatactccccccacaaacacaactcttcatcc 4902123  T
Q  519 acgccacccactta 532  Q
    || |||||||||||    
T  4902122 accccacccactta 4902109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 413 - 531
Target Start/End: Complemental strand, 25660322 - 25660204
Alignment:
Q  413 gctagtggatccccttgcttaagacctctttgaatactaatttcctccgtaggacacccattgacaagaatcaacatacttcctccaaatacacaggctt 512  Q
    ||||| |||||  |||||||||| ||||  ||||||  |||||||||||| |||| ||| || ||||| ||  ||||  |||||||| | ||| | || |    
T  25660322 gctaggggatcatcttgcttaaggcctcgatgaatagaaatttcctccgtgggactcccgttaacaaggattgacattgttcctccacacacaaacgcct 25660223  T
Q  513 tcatccacgccacccactt 531  Q
    |||||||||||||||||||    
T  25660222 tcatccacgccacccactt 25660204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 694 - 755
Target Start/End: Original strand, 5343272 - 5343333
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5343272 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataagtcaatgatgtgtg 5343333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 33336237 - 33336176
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33336237 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaaccaatgatgtgtg 33336176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 693 - 755
Target Start/End: Original strand, 16838535 - 16838597
Alignment:
Q  693 atgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  16838535 atgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaaccaatgatatgtg 16838597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 694 - 755
Target Start/End: Original strand, 6005209 - 6005270
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6005209 tgttgtaaatccggctcaactaatgaaccttcacaccaatgagaataaaccaatgatgtgtg 6005270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 33330740 - 33330679
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  33330740 tgttgtgaatccggctcaactaatgaaccttcacaccaattagaataaaccaatgatgtgtg 33330679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 419 - 495
Target Start/End: Original strand, 10574426 - 10574502
Alignment:
Q  419 ggatccccttgcttaagacctctttgaatactaatttcctccgtaggacacccattgacaagaatcaacatacttcc 495  Q
    ||||| ||||| ||||| ||||| ||||||||||| ||||| |||||||  ||||| ||||||||| ||||||||||    
T  10574426 ggatctccttgtttaaggcctctatgaatactaatctcctcggtaggacttccattaacaagaatcgacatacttcc 10574502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 43988759 - 43988698
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43988759 tgttgtgaatccggctcaactaatgaaccttcacgccaatgagaataaatcaatgatgtgtg 43988698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 42449971 - 42450179
Alignment:
Q  30 agcctaccccctaaggtctcaatcaacggttcccaagtcaccatgctcctcggattggctcccaccggaagacccaaatatttgaaaggaattgagcccg 129  Q
    ||||| || ||||||||||| | |||||||||||||||   ||| || ||| |||| || |||||||| |||||||| |||||||| || |   | |||     
T  42449971 agcctccctcctaaggtctccaccaacggttcccaagttgacatacttctcagatttgcccccaccgggagacccaagtatttgaacggtagacaaccct 42450070  T
Q  130 caatacaattcaaaatatcacatgccatcaacgtaaactcttccctaatgttaacccctatcaatgagctcttggagaaattaatcttcaaacccgacgc 229  Q
    || |||||||||| | ||||||| ||||   | ||||||| || || |  |||||||||||||| | ||| ||||||||||||||||||||||| || ||    
T  42450071 cactacaattcaagaaatcacatcccattgccataaactcctcactcacattaacccctatcaacgtgcttttggagaaattaatcttcaaaccggatgc 42450170  T
Q  230 catttcaaa 238  Q
    ||| |||||    
T  42450171 catctcaaa 42450179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 420 - 547
Target Start/End: Complemental strand, 7953380 - 7953253
Alignment:
Q  420 gatccccttgcttaagacctctttgaatactaatttcctccgtaggacacccattgacaagaatcaacatacttcctccaaatacacaggctttcatcca 519  Q
    |||||||||| ||||| |||||   |||| ||||||||||||||||||  ||||| ||||||||  ||||||| |||||| | ||||| | |||||||||    
T  7953380 gatccccttgtttaaggcctctacaaatattaatttcctccgtaggacttccattcacaagaatagacatactacctccacaaacacatgttttcatcca 7953281  T
Q  520 cgccacccacttatcacataaccccact 547  Q
      |||||||||||||||  |||||||||    
T  7953280 acccacccacttatcaccaaaccccact 7953253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 25445382 - 25445322
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||| || || || |||||||||||||||||| |||||| ||||||||||||    
T  25445382 tgttgtgaatccggttctacaaacgaaccttcacaccaatga-aataaaccaatgatgtgtg 25445322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 694 - 755
Target Start/End: Original strand, 39445292 - 39445352
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||| || || || |||||||||||||||||| |||||| ||||||||||||    
T  39445292 tgttgtgaatccggttctacaaacgaaccttcacaccaatga-aataaaccaatgatgtgtg 39445352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 419 - 546
Target Start/End: Original strand, 24615789 - 24615916
Alignment:
Q  419 ggatccccttgcttaagacctctttgaatactaatttcctccgtaggacacccattgacaagaatcaacatacttcctccaaatacacaggctttcatcc 518  Q
    ||||||||||||||||| || |  || ||||| || |||||||| || |||||||| ||||||||  |||||   || ||| | ||||| ||||||||||    
T  24615789 ggatccccttgcttaagcccgcgatggatacttatctcctccgtcgggcacccattaacaagaatagacatagaaccaccacacacacaagctttcatcc 24615888  T
Q  519 acgccacccacttatcacataaccccac 546  Q
    | || |||||||| ||||| | ||||||    
T  24615889 atgctacccacttgtcacacatccccac 24615916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 1055304 - 1055244
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||| || || |  |||||||||||||||||| |||||| ||||||||||||    
T  1055304 tgttgtgaatccggttctacaatcgaaccttcacaccaatga-aataaaccaatgatgtgtg 1055244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 694 - 742
Target Start/End: Original strand, 6293 - 6341
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaa 742  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6293 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaa 6341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 362 - 397
Target Start/End: Complemental strand, 13852844 - 13852809
Alignment:
Q  362 ttcctcatcaaaccgctaaaaccttccgcaaccaac 397  Q
    ||||||||||||||||||||||||||||||||||||    
T  13852844 ttcctcatcaaaccgctaaaaccttccgcaaccaac 13852809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 532
Target Start/End: Original strand, 47550853 - 47550915
Alignment:
Q  470 ccattgacaagaatcaacatacttcctccaaatacacaggctttcatccacgccacccactta 532  Q
    ||||||||||| ||| ||||||| ||||| || ||||| ||||||||||| ||||||||||||    
T  47550853 ccattgacaaggatcgacatactacctccgaagacacatgctttcatccaagccacccactta 47550915  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 755
Target Start/End: Original strand, 18855507 - 18855579
Alignment:
Q  682 ggacaacaaaaatgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    ||||| |||| ||||||||||||||| || || |  |||||||||||||||||| |||||| ||||||||||||    
T  18855507 ggacatcaaagatgttgtgaatccggttctacaagcgaaccttcacaccaatga-aataaaccaatgatgtgtg 18855579  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 755
Target Start/End: Original strand, 3813816 - 3813876
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||| || || ||  ||||||||||||||||| |||||| ||||||||||||    
T  3813816 tgttgtgaatccggttctacaaagaaaccttcacaccaatga-aataaaccaatgatgtgtg 3813876  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 693 - 755
Target Start/End: Original strand, 19344211 - 19344273
Alignment:
Q  693 atgttgtgaatccggctcaactaatg-aaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    ||||||||||||||| |||||||||| ||||||||||||||||| |||||| ||| ||||||||    
T  19344211 atgttgtgaatccggttcaactaatgaaaccttcacaccaatga-aataaaccaaagatgtgtg 19344273  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 755
Target Start/End: Original strand, 19349070 - 19349131
Alignment:
Q  694 tgttgtgaatccggctcaactaatg-aaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||| |||||||||| ||||||||||||||||| |||||| ||| ||||||||    
T  19349070 tgttgtgaatccggttcaactaatgaaaccttcacaccaatga-aataaaccaaagatgtgtg 19349131  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 755
Target Start/End: Original strand, 32246577 - 32246637
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||| || || ||  ||||||||||||||||| |||||| ||||||||||||    
T  32246577 tgttgtgaatccggttctacaaagaaaccttcacaccaatga-aataaaccaatgatgtgtg 32246637  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 519
Target Start/End: Complemental strand, 38969342 - 38969269
Alignment:
Q  446 atactaatttcctccgtaggacacccattgacaagaatcaacatacttcctccaaatacacaggctttcatcca 519  Q
    |||| |||||||||||| ||  | ||||| ||||| ||||||||| | |||||||||||||| || ||||||||    
T  38969342 atacaaatttcctccgtcggtgagccattaacaaggatcaacatattacctccaaatacacacgccttcatcca 38969269  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 519
Target Start/End: Original strand, 44515140 - 44515237
Alignment:
Q  422 tccccttgcttaagacctctttgaatactaatttcctccgtaggacacccattgacaagaatcaacatacttcctccaaatacacaggctttcatcca 519  Q
    |||||||| || |||||||| |||||| | ||||||||||| || |  ||||| ||||||| | ||||||| ||| || | ||||| |||||||||||    
T  44515140 tccccttgtttgagacctctatgaatattgatttcctccgtggggctaccattaacaagaaccgacatactaccttcacacacacaagctttcatcca 44515237  T

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Target: scaffold0464 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 755
Target Start/End: Original strand, 155 - 215
Alignment:
Q  694 tgttgtgaatccggctcaactaatgaaccttcacaccaatgagaataaatcaatgatgtgtg 755  Q
    |||||||||||||| || || || |||||||||||||||||| |||||| ||| ||||||||    
T  155 tgttgtgaatccggttctacaaacgaaccttcacaccaatga-aataaaccaaagatgtgtg 215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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